ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45g02 |
|---|---|
| Clone Library Name | barley_pub |
>SBP_ARATH (O23264) Putative selenium-binding protein| Length = 490 Score = 183 bits (464), Expect = 3e-46 Identities = 82/102 (80%), Positives = 94/102 (92%) Frame = -2 Query: 488 QYAVPQVKGHRLRGGPQMIQLSLDGKRVYVTNSLFSRWDEQFYGPDLLKKGSHMLQIDVD 309 Q+ VPQ+KG LRGGPQMIQLSLDGKR+Y TNSLFS WD QFY P++++KGSH++QIDVD Sbjct: 390 QFEVPQIKGKSLRGGPQMIQLSLDGKRLYATNSLFSAWDRQFY-PEIMEKGSHIIQIDVD 448 Query: 308 TEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 TEKGGL++NPDFFVDFG EP+GPSLAHEMRYPGGDCTSDIWI Sbjct: 449 TEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490
>SBP2_MOUSE (Q63836) Selenium-binding protein 2 (56 kDa acetaminophen-binding| protein) (AP56) Length = 472 Score = 153 bits (386), Expect = 3e-37 Identities = 70/96 (72%), Positives = 83/96 (86%) Frame = -2 Query: 470 VKGHRLRGGPQMIQLSLDGKRVYVTNSLFSRWDEQFYGPDLLKKGSHMLQIDVDTEKGGL 291 VKG R+ GGPQMIQLSLDGKR+Y T SL+S WD+QFY PDL+++GS MLQ+DVDT GGL Sbjct: 378 VKGKRIPGGPQMIQLSLDGKRLYATTSLYSDWDKQFY-PDLIREGSVMLQVDVDTVNGGL 436 Query: 290 SVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 +NP+F VDFG EP GP+LAHE+RYPGGDC+SDIWI Sbjct: 437 KLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>SBP1_HUMAN (Q13228) Selenium-binding protein 1| Length = 472 Score = 152 bits (384), Expect = 5e-37 Identities = 72/109 (66%), Positives = 90/109 (82%), Gaps = 3/109 (2%) Frame = -2 Query: 500 DKEEQYAVPQ---VKGHRLRGGPQMIQLSLDGKRVYVTNSLFSRWDEQFYGPDLLKKGSH 330 + EE + P+ VKG R+ GGPQMIQLSLDGKR+Y+T SL+S W++QFY PDL+++GS Sbjct: 365 EDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWEKQFY-PDLIREGSV 423 Query: 329 MLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 MLQ+DVDT KGGL +NP+ VDFG EP GP+LAHE+RYPGGDC+SDIWI Sbjct: 424 MLQVDVDTVKGGLKLNPNCLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>SBP1_MOUSE (P17563) Selenium-binding protein 1 (56 kDa selenium-binding| protein) (SP56) Length = 472 Score = 151 bits (381), Expect = 1e-36 Identities = 70/96 (72%), Positives = 82/96 (85%) Frame = -2 Query: 470 VKGHRLRGGPQMIQLSLDGKRVYVTNSLFSRWDEQFYGPDLLKKGSHMLQIDVDTEKGGL 291 VKG R+ GGPQMIQLSLDGKR+Y T SL+S WD+QFY PDL+++GS MLQIDVDT GGL Sbjct: 378 VKGKRIPGGPQMIQLSLDGKRLYATTSLYSAWDKQFY-PDLIREGSMMLQIDVDTVNGGL 436 Query: 290 SVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 +NP+F VDFG EP G +LAHE+RYPGGDC+SDIWI Sbjct: 437 KLNPNFLVDFGKEPLGAALAHELRYPGGDCSSDIWI 472
>SBP_CAEEL (Q21950) Putative selenium-binding protein| Length = 576 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/83 (38%), Positives = 50/83 (60%) Frame = -2 Query: 467 KGHRLRGGPQMIQLSLDGKRVYVTNSLFSRWDEQFYGPDLLKKGSHMLQIDVDTEKGGLS 288 +G + RGGP ++QLS DG R+YV NS + WD QFY P+L+ G M+++D+ ++ + Sbjct: 451 RGTKFRGGPALMQLSKDGCRLYVCNSFYKAWDAQFY-PELISDGGQMIRVDIVDDE--MQ 507 Query: 287 VNPDFFVDFGTEPEGPSLAHEMR 219 +N F +D + PSL R Sbjct: 508 LNEKFLIDM----KKPSLIQNYR 526
>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) Length = 913 Score = 32.0 bits (71), Expect = 0.95 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 298 GGSVSTPTSSWISAPSLKVPPWPMR*DILGETAPLTYGSRTKGVTYAA 155 G V P+S + AP +PP P R D+L + AP+ + G A Sbjct: 473 GAKVERPSSPFSMAPQASLPPVPPRLDLLQQRAPVPASTSVLGTASKA 520
>FRU_DROME (Q8IN81) Sex determination protein fruitless| Length = 955 Score = 30.8 bits (68), Expect = 2.1 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 154 QLHMLHPSS*IHMSEVQSPPGYLISWAKEGPSGSVPKST--KKSGLTLSPPFSVSTS 318 QLH HP S H S QS P Y + +GSV S SG S P SV+TS Sbjct: 787 QLHQ-HPPSATHPSHSQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATS 842
>NCPR_SCHPO (P36587) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)| (P450R) Length = 678 Score = 30.8 bits (68), Expect = 2.1 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +1 Query: 112 RNHLNYSELNTMDLQLHMLHPSS*IHMSEVQSPPGYLISWAKEGP----SGSVPKSTKKS 279 +NH+ Y L T L H H +H ++ P G + + EGP +G +P KKS Sbjct: 470 KNHIFYG-LTTNYLLAHCRH----MHGEKIPHPNG--LEYTLEGPRKNWTGKIPMFVKKS 522 Query: 280 GLTLSPP 300 L+PP Sbjct: 523 TFRLAPP 529
>KCNH2_RABIT (Q8WNY2) Potassium voltage-gated channel subfamily H member 2| (Voltage-gated potassium channel subunit Kv11.1) (Ether-a-go-go-related gene potassium channel 1) (ERG1) (RERG) (ra-erg) (Ether-a-go-go-related protein 1) (Eag-related protein 1) Length = 1161 Score = 26.6 bits (57), Expect(2) = 2.7 Identities = 16/52 (30%), Positives = 24/52 (46%) Frame = +2 Query: 182 RSICQRCSLPQDISSHGPRRDLQARCRNPRRSRG*H*APLSRCRRRSATCEI 337 R++ CS P +S+ GP L+A NP S L+R R R + + Sbjct: 232 RALVGSCSPPPPVSAPGPHPSLRAHSLNPDASGS--SCSLARTRSRESCASV 281 Score = 22.3 bits (46), Expect(2) = 2.7 Identities = 10/24 (41%), Positives = 13/24 (54%) Frame = +3 Query: 342 LEKVRAVELLVPPAEERVGHIHPL 413 +E +RA L PP G +HPL Sbjct: 290 IEAMRAGALPPPPRHASTGAMHPL 313
>AGRN_DISOM (Q90404) Agrin (Fragment)| Length = 1328 Score = 30.4 bits (67), Expect = 2.8 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +1 Query: 208 PPGYLISWAKEGPSGSVPKSTKKSGLTLSPPFS 306 PP W K P VP +T K T PPFS Sbjct: 564 PPPATTRWPKVLPHAKVPSTTTKPATTRRPPFS 596
>T1MD_MYCPN (P75436) Putative type I restriction enzyme MpnORFDP M protein (EC| 2.1.1.72) (M.MpnORFDP) (H91_orf543) Length = 543 Score = 30.0 bits (66), Expect = 3.6 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +1 Query: 115 NHLNYSELNTMDLQLHMLHPSS*IHMSEVQSPPGYLISWAKEGPSGSVPKSTKKSGLTLS 294 N +N L T + + H ++ S+ V S P Y ISWA + S V K TL+ Sbjct: 289 NIINADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLA 348 Query: 295 P 297 P Sbjct: 349 P 349
>FA47B_HUMAN (Q8NA70) Protein FAM47B| Length = 645 Score = 29.6 bits (65), Expect = 4.7 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 357 AVELLVPPAEERVGHIHPLAIQAELNHLRP 446 A L P E RV H+HP + ++HLRP Sbjct: 280 ASHLCPEPPETRVSHLHPEPPETGVSHLRP 309
>BIP2_MAIZE (P24067) Luminal-binding protein 2 precursor (BiP2) (Heat shock| protein 70 homolog 2) (B70) (B-70) Length = 663 Score = 29.6 bits (65), Expect = 4.7 Identities = 21/61 (34%), Positives = 29/61 (47%) Frame = -2 Query: 359 GPDLLKKGSHMLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI* 180 G + K +L+ D ++ VNPD V FG +G L+ E GGD T DI + Sbjct: 368 GSTRIPKVQQLLRDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGE----GGDETKDILLL 423 Query: 179 D 177 D Sbjct: 424 D 424
>CARB_BRUSU (Q8FZJ3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1162 Score = 28.9 bits (63), Expect = 8.1 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 23/119 (19%) Frame = +3 Query: 135 AQHHGSPAAYV-----TPFVLDPYVRGAVSPRIS--------HLMGQG---------GTF 248 A SP AY+ TPFV P VS R + +GQG F Sbjct: 587 AAEFASPTAYMYSTYETPFVGQPRSEAEVSDRKKVVILGGGPNRIGQGIEFDYCCCHAAF 646 Query: 249 RLGAEIHEEVGVDTEPPFLGVDVDLQHVRSLLEKVRAVELL-VPPAEERVGHIHPLAIQ 422 LG +E + V+ P + D D R E + A ++L + E++ G +H + +Q Sbjct: 647 ALGDADYEAIMVNCNPETVSTDYDTSD-RLYFEPLTAEDVLEILRVEKQKGTLHGVIVQ 704
>CARB_BRUME (Q8YIC2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)| (Carbamoyl-phosphate synthetase ammonia chain) Length = 1162 Score = 28.9 bits (63), Expect = 8.1 Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 23/119 (19%) Frame = +3 Query: 135 AQHHGSPAAYV-----TPFVLDPYVRGAVSPRIS--------HLMGQG---------GTF 248 A SP AY+ TPFV P VS R + +GQG F Sbjct: 587 AAEFASPTAYMYSTYETPFVGQPRSEAEVSDRKKVVILGGGPNRIGQGIEFDYCCCHAAF 646 Query: 249 RLGAEIHEEVGVDTEPPFLGVDVDLQHVRSLLEKVRAVELL-VPPAEERVGHIHPLAIQ 422 LG +E + V+ P + D D R E + A ++L + E++ G +H + +Q Sbjct: 647 ALGDADYEAIMVNCNPETVSTDYDTSD-RLYFEPLTAEDVLEILRVEKQKGTLHGVIVQ 704
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -3 Query: 319 STSTPRKGGSVSTPTSSWISAPSLKVPP 236 S STPR G V+ +S +I APS V P Sbjct: 534 SPSTPRSSGPVTATSSLYIPAPSRPVTP 561
>FAS2_SCHPO (Q10289) Fatty acid synthase alpha subunit (EC 2.3.1.86) (p190/210)| [Includes: Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ket Length = 1842 Score = 28.9 bits (63), Expect = 8.1 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 18/101 (17%) Frame = -2 Query: 494 EEQYAVPQVKGHRLRGGPQMIQLSLDGKRVYVTNSLFSRWDEQFYGPDLLKKGS------ 333 +++YA+ G G + L G +V VT S FSR +FY + GS Sbjct: 634 QDKYALVTGAGAGSIGAQIVEGLLAGGAKVVVTTSRFSRKVTEFYQSLYTRHGSRGSCLI 693 Query: 332 -----HMLQIDVDT-------EKGGLSVNPDFFVDFGTEPE 246 + DV+ EK GL N D+ V F PE Sbjct: 694 VVPFNQGSKTDVEALIDYIYDEKKGLGWNLDYIVPFAAIPE 734
>PTPRR_RAT (O08617) Receptor-type tyrosine-protein phosphatase R precursor (EC| 3.1.3.48) (Protein-tyrosine phosphatase PCPTP1) (Tyrosine phosphatase CBPTP) (PC12-PTP1) Length = 656 Score = 28.9 bits (63), Expect = 8.1 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 303 LGVDVDLQHVRSLLEKVRAVELLVPPAEERVGHIHPLAIQAE 428 LG+ H+ L+EK +EL V P + G P A+QAE Sbjct: 143 LGLLPQQVHINRLIEKKSQIELFVSPGNRKPG--EPQALQAE 182
>CP138_MYCTU (P63717) Putative cytochrome P450 138 (EC 1.14.-.-)| Length = 441 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/45 (31%), Positives = 18/45 (40%) Frame = +3 Query: 174 FVLDPYVRGAVSPRISHLMGQGGTFRLGAEIHEEVGVDTEPPFLG 308 F P G + P +S + G G F L + H PPF G Sbjct: 73 FTSSPEELGNIQPNLSRMFGSGSVFALDGDDHRRRRRLLAPPFHG 117
>CP138_MYCBO (P63718) Putative cytochrome P450 138 (EC 1.14.-.-)| Length = 441 Score = 28.9 bits (63), Expect = 8.1 Identities = 14/45 (31%), Positives = 18/45 (40%) Frame = +3 Query: 174 FVLDPYVRGAVSPRISHLMGQGGTFRLGAEIHEEVGVDTEPPFLG 308 F P G + P +S + G G F L + H PPF G Sbjct: 73 FTSSPEELGNIQPNLSRMFGSGSVFALDGDDHRRRRRLLAPPFHG 117 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,880,888 Number of Sequences: 219361 Number of extensions: 1879289 Number of successful extensions: 5238 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5044 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5226 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3581144924 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
