Clone Name | rbart45f08 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_642264.1| Dictyostelium discoideum hypothetical protein (DDB0189592), partial mRNA Length = 3192 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 taaacattcaacaactctga 76 |||||||||||||||||||| Sbjct: 396 taaacattcaacaactctga 377
>emb|AL451049.11| Human DNA sequence from clone RP11-63A2 on chromosome 10 Contains a novel gene and a CpG island, complete sequence Length = 166973 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 gcaaaataacccttttgata 35 |||||||||||||||||||| Sbjct: 76561 gcaaaataacccttttgata 76542
>emb|AL929229.6| Zebrafish DNA sequence from clone CH211-1E14 in linkage group 18, complete sequence Length = 184794 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 taaacattcaacaactctga 76 |||||||||||||||||||| Sbjct: 67303 taaacattcaacaactctga 67284
>emb|BX000474.13| Mouse DNA sequence from clone RP24-80C21 on chromosome 2, complete sequence Length = 205184 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ctaacataaagaccaaaccc 155 |||||||||||||||||||| Sbjct: 61560 ctaacataaagaccaaaccc 61541
>gb|AC109157.10| Mus musculus chromosome 7, clone RP24-169M16, complete sequence Length = 164968 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 cttttgatattaaatcaca 45 ||||||||||||||||||| Sbjct: 156354 cttttgatattaaatcaca 156336
>ref|XM_629594.1| Dictyostelium discoideum hypothetical protein (DDB0184369), partial mRNA Length = 2052 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 47 aaacatttggtaaacattcaaca 69 ||||||||||| ||||||||||| Sbjct: 1321 aaacatttggtgaacattcaaca 1299
>gb|AC024797.1| Caenorhabditis elegans cosmid Y48G8AR, complete sequence Length = 46975 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 aaatcacagaaacatttgg 56 ||||||||||||||||||| Sbjct: 45901 aaatcacagaaacatttgg 45919
>gb|AY714780.1| Homo sapiens carboxypeptidase B2 (plasma, carboxypeptidase U) (CPB2) gene, complete cds Length = 55829 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 cacagaaacatttggtaaa 60 ||||||||||||||||||| Sbjct: 4286 cacagaaacatttggtaaa 4268
>gb|AC139321.4| Mus musculus BAC clone RP24-425N6 from chromosome 1, complete sequence Length = 148379 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 34 tattaaatcacagaaacat 52 ||||||||||||||||||| Sbjct: 59756 tattaaatcacagaaacat 59774
>gb|AC005103.3| Homo sapiens BAC clone CTA-357J21 from 7, complete sequence Length = 146006 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aaaataacccttttgatattaaa 40 ||||||||| ||||||||||||| Sbjct: 38060 aaaataacctttttgatattaaa 38038
>gb|AC110262.12| Mus musculus chromosome 17, clone RP23-291L10, complete sequence Length = 210850 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 aaacatttggtaaacattc 65 ||||||||||||||||||| Sbjct: 73293 aaacatttggtaaacattc 73275
>emb|BX901895.15| Zebrafish DNA sequence from clone CH211-218C11 in linkage group 7, complete sequence Length = 208436 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 195382 taaatcacagaaacatttg 195400
>gb|AC122821.4| Mus musculus BAC clone RP23-201I4 from chromosome 17, complete sequence Length = 220013 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 aaacatttggtaaacattc 65 ||||||||||||||||||| Sbjct: 5328 aaacatttggtaaacattc 5346
>gb|AC117222.3| Mus musculus BAC clone RP23-347H12 from chromosome 16, complete sequence Length = 200746 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 107667 taaatcacagaaacatttg 107649
>gb|AC121791.3| Mus musculus BAC clone RP23-401H19 from chromosome 14, complete sequence Length = 197720 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 ggaaaccaatgagggcaaa 20 ||||||||||||||||||| Sbjct: 177802 ggaaaccaatgagggcaaa 177820
>emb|CR361566.15| Zebrafish DNA sequence from clone CH211-248E11 in linkage group 8, complete sequence Length = 182427 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 taaacattcaacaactctg 75 ||||||||||||||||||| Sbjct: 5393 taaacattcaacaactctg 5375
>gb|AF047825.1| Homo sapiens PAC 50H2 in the CUTL1 locus, complete sequence Length = 151964 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 18 aaaataacccttttgatattaaa 40 ||||||||| ||||||||||||| Sbjct: 110559 aaaataacctttttgatattaaa 110581
>gb|AC160553.7| Mus musculus chromosome 7, clone RP23-334C12, complete sequence Length = 191999 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 27 cttttgatattaaatcaca 45 ||||||||||||||||||| Sbjct: 84152 cttttgatattaaatcaca 84134
>emb|AL589740.4| Human DNA sequence from clone RP11-436D23 on chromosome 6 Contains part of a novel gene, complete sequence Length = 187863 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 49 acatttggtaaacattcaa 67 ||||||||||||||||||| Sbjct: 59378 acatttggtaaacattcaa 59396
>emb|AL137141.10| Human DNA sequence from clone RP11-139H14 on chromosome 13 Contains the 5' end of the CPB2 gene for carboxypeptidase B2 (plasma, carboxypeptidase U), 2 novel genes, the LCP1 gene for lymphocyte cytosolic protein 1 (L-plastin) and a CpG Island, complete sequence Length = 180680 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 cacagaaacatttggtaaa 60 ||||||||||||||||||| Sbjct: 149509 cacagaaacatttggtaaa 149491
>gb|AC098798.4| Homo sapiens chromosome 4 clone RP11-579K7, complete sequence Length = 76445 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 19 aaataacccttttgatatt 37 ||||||||||||||||||| Sbjct: 60697 aaataacccttttgatatt 60679
>emb|AL591391.5| Zebrafish DNA sequence from clone BUSM1-186F8 in linkage group 7 Contains the nitr1a_3 gene for novel immune-type receptor 1a, allele 3, the nitr1c_3 gene for novel immune-type receptor 1c, allele 3, the nitr2e_1 gene for novel immune-type receptor 2e, allele 1, the nitr1b_2 gene for novel immune-ype receptor 1b, allele 2, the nitr2a_3 gene for novel immune-type receptor 2a, allele 3, the nitr2b_1 gene for novel immune-type receptor 2b, allele 1, the nitr1f_1 gene for novel immune-type receptor 1f, allele 1, a novel immune-type receptor 2c pseudogene, the nitr3d_3 gene for novel immune-type receptor 3d, allele 3, the nitr1h_1 gene for novel immune-type receptor 1h, allele 1, the nitr1d_5 gene for novel immune-type receptor 1d, allele 5 and two novel immune-type receptor 1 pseudogenes, complete sequence Length = 97640 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 42381 taaatcacagaaacatttg 42399
>emb|AL591497.2| Zebrafish DNA sequence from clone BUSM1-173M20 in linkage group 7 Contains the nitr1.14, nitr1.17, nitr1.18, nitr2.4, nitr2.6, nitr3r.2, nitr1.13, nitr1.15, nitr1.16, nitr2.5, nitr3.4 and nitr3r.1 genes for novel immune-type receptors and a nitr pseudogene, complete sequence Length = 127998 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 68415 taaatcacagaaacatttg 68397
>emb|BX000980.13| Zebrafish DNA sequence from clone CH211-136D9, complete sequence Length = 169191 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 taaacattcaacaactctg 75 ||||||||||||||||||| Sbjct: 50559 taaacattcaacaactctg 50541
>emb|BX248241.20| Zebrafish DNA sequence from clone DKEY-22K18 in linkage group 19, complete sequence Length = 101595 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 tggtaaacattcaacaact 72 ||||||||||||||||||| Sbjct: 1600 tggtaaacattcaacaact 1582
>emb|CR382339.9| Zebrafish DNA sequence from clone CH211-129E5 in linkage group 13, complete sequence Length = 169923 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 66189 taaatcacagaaacatttg 66171
>emb|CR555301.4| Zebrafish DNA sequence from clone CH211-129A13 in linkage group 13, complete sequence Length = 168518 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 48681 taaatcacagaaacatttg 48663
>gb|AC108941.4| Homo sapiens BAC clone RP11-736K12 from 4, complete sequence Length = 179273 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 ggcaaaataacccttttga 33 ||||||||||||||||||| Sbjct: 83077 ggcaaaataacccttttga 83059
>gb|AC008627.7| Homo sapiens chromosome 5 clone CTB-160O22, complete sequence Length = 153553 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ttaaatcacagaaacattt 54 ||||||||||||||||||| Sbjct: 99021 ttaaatcacagaaacattt 99039
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 aacccttttgatattaaat 41 ||||||||||||||||||| Sbjct: 23818908 aacccttttgatattaaat 23818890
>emb|BX088536.8| Zebrafish DNA sequence from clone CH211-186M20 in linkage group 14, complete sequence Length = 104242 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 taaacattcaacaactctg 75 ||||||||||||||||||| Sbjct: 68497 taaacattcaacaactctg 68515
>gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete sequence Length = 162609 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 18 aaaataacccttttgatat 36 ||||||||||||||||||| Sbjct: 105844 aaaataacccttttgatat 105862
>gb|AC129176.6| Mus musculus BAC clone RP23-124D10 from chromosome unknown, complete sequence Length = 211031 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 138 aacataaagaccaaacccc 156 ||||||||||||||||||| Sbjct: 185013 aacataaagaccaaacccc 184995
>gb|AC096678.4| Pan troglodytes clone RP43-140G16, complete sequence Length = 95528 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aaaataacccttttgatattaaa 40 ||||||||| ||||||||||||| Sbjct: 27332 aaaataacctttttgatattaaa 27310
>gb|AC093124.3| Papio anubis clone RP41-216E17, complete sequence Length = 190322 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 18 aaaataacccttttgatattaaa 40 ||||||||| ||||||||||||| Sbjct: 48475 aaaataacctttttgatattaaa 48453
>emb|BX284622.3| Zebrafish DNA sequence from clone DKEY-174P10 in linkage group 19, complete sequence Length = 126451 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 54 tggtaaacattcaacaact 72 ||||||||||||||||||| Sbjct: 126051 tggtaaacattcaacaact 126033
>emb|BX247871.7| Zebrafish DNA sequence from clone CH211-190P8, complete sequence Length = 145789 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 57 taaacattcaacaactctg 75 ||||||||||||||||||| Sbjct: 117831 taaacattcaacaactctg 117813
>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0030C08 Length = 163423 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 aacccttttgatattaaat 41 ||||||||||||||||||| Sbjct: 40574 aacccttttgatattaaat 40556
>emb|BX323829.16| Zebrafish DNA sequence from clone RP71-14B1 in linkage group 18, complete sequence Length = 148650 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 57 taaacattcaacaactctg 75 ||||||||||||||||||| Sbjct: 142962 taaacattcaacaactctg 142980
>emb|AL844870.6| Zebrafish DNA sequence from clone BUSM1-169I8 in linkage group 7, complete sequence Length = 132503 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 15004 taaatcacagaaacatttg 14986
>emb|AL591482.3| Zebrafish DNA sequence from clone BUSM1-116C14 in linkage group 7, complete sequence Length = 95364 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 47963 taaatcacagaaacatttg 47981
>gb|AC149271.5| Mus musculus chromosome 7, clone RP23-216J17, complete sequence Length = 213512 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 138 aacataaagaccaaacccc 156 ||||||||||||||||||| Sbjct: 119239 aacataaagaccaaacccc 119257
>gb|AF133636.1|AF133636 Ostrinia nubilalis isolate BZ1a pheromone binding protein (PBP) gene, complete cds Length = 1468 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 58 aaacattcaacaactctga 76 ||||||||||||||||||| Sbjct: 1380 aaacattcaacaactctga 1362
>emb|AL591418.11| Zebrafish DNA sequence from clone BUSM1-139E19 in linkage group 7, complete sequence Length = 112025 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 taaatcacagaaacatttg 55 ||||||||||||||||||| Sbjct: 46077 taaatcacagaaacatttg 46095
>dbj|AB041645.1| Mus musculus gene for ESP-1, complete cds Length = 17405 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 aaacatttggtaaacattc 65 ||||||||||||||||||| Sbjct: 1152 aaacatttggtaaacattc 1134 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,544,236 Number of Sequences: 3902068 Number of extensions: 1544236 Number of successful extensions: 112496 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112382 Number of HSP's gapped (non-prelim): 114 length of query: 159 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 137 effective length of database: 17,147,199,772 effective search space: 2349166368764 effective search space used: 2349166368764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)