ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase... 135 2e-29
2emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione ... 52 3e-04
3gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full... 46 0.016
4gb|AY026674.1| Shorea leprosula internal transcribed spacer 1, p... 40 0.99
5gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complet... 40 0.99
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 0.99
7dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic D... 40 0.99
8dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic D... 40 0.99
9gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete... 38 3.9
10emb|AL354696.11| Human DNA sequence from clone RP11-74J13 on chr... 38 3.9
11emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione ... 38 3.9
12gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Canc... 38 3.9
13gb|AC144365.3| Didelphis virginiana clone LB3-90O15, complete se... 38 3.9
14gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76... 38 3.9
15gb|AC002443.1|AC002443 Drosophila melanogaster DNA sequence (P1 ... 38 3.9
16gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 38 3.9

>gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase mRNA, complete cds
          Length = 1092

 Score =  135 bits (68), Expect = 2e-29
 Identities = 80/84 (95%)
 Strand = Plus / Minus

                                                                        
Query: 7    ccaacggggagggcaaatcaaatcgactcacagccttcttaatttattcatcgcacggag 66
            ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 ccaacggtgaggccaaatcaaatcgactcacagccttcttaatttattcatcgcacggag 1012

                                    
Query: 67   cgggtataaaaatggaatcccagg 90
            |||||||| |||||||||| ||||
Sbjct: 1011 cgggtatagaaatggaatcgcagg 988



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>emb|AJ414699.1|TAE414699 Triticum aestivum mRNA for glutathione transferase (gstu1C gene)
          Length = 1008

 Score = 52.0 bits (26), Expect = 3e-04
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 40  ccttcttaatttattcatcgcacgga 65
           ||||||||||||||||||||||||||
Sbjct: 984 ccttcttaatttattcatcgcacgga 959



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>gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full insert mRNA
            sequence
          Length = 1966

 Score = 46.1 bits (23), Expect = 0.016
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 43   tcttaatttattcatcgcacgga 65
            |||||||||||||||||||||||
Sbjct: 1030 tcttaatttattcatcgcacgga 1008



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>gb|AY026674.1| Shorea leprosula internal transcribed spacer 1, partial sequence
          Length = 381

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   ggaaaaccaacggggagggc 20
           ||||||||||||||||||||
Sbjct: 272 ggaaaaccaacggggagggc 291



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>gb|AC091654.4| Homo sapiens BAC clone RP11-177C9 from 7, complete sequence
          Length = 116507

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    tcacagccttcttaatttat 53
             ||||||||||||||||||||
Sbjct: 11950 tcacagccttcttaatttat 11969



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 40      ccttcttaatttattcatcg 59
               ||||||||||||||||||||
Sbjct: 4116807 ccttcttaatttattcatcg 4116826



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>dbj|AP003992.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1077_E05
          Length = 116305

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    ccttcttaatttattcatcg 59
             ||||||||||||||||||||
Sbjct: 26821 ccttcttaatttattcatcg 26840



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>dbj|AP005772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0073A21
          Length = 170051

 Score = 40.1 bits (20), Expect = 0.99
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     ccttcttaatttattcatcg 59
              ||||||||||||||||||||
Sbjct: 163473 ccttcttaatttattcatcg 163492



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>gb|AC093440.2| Drosophila melanogaster clone BACR34H03, complete sequence
          Length = 192132

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     ggagcgggtataaaaatgg 81
              |||||||||||||||||||
Sbjct: 150247 ggagcgggtataaaaatgg 150229



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>emb|AL354696.11| Human DNA sequence from clone RP11-74J13 on chromosome 13 Contains a
              novel gene (FLJ30271, FLJ13413, DKFZp547M073), a calmodulin
              pseudogene, a novel gene (DKFZP434E2318), the MTFR1 gene
              for mitochondrial translational release factor 1 (RF1,
              MTTRF1), a ras homolog gene family, member G (rho G) (ARHG)
              pseudogene, the 5' end of the gene for a novel TPR domain
              containing protein and 3 CpG islands, complete sequence
          Length = 202565

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 73     taaaaatggaatcccaggg 91
              |||||||||||||||||||
Sbjct: 115292 taaaaatggaatcccaggg 115274



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>emb|AJ414698.1|TAE414698 Triticum aestivum mRNA for glutathione transferase (gstu1B gene)
          Length = 1051

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 43   tcttaatttattcatcgcacgga 65
            ||||||||||||| |||||||||
Sbjct: 1006 tcttaatttattcctcgcacgga 984



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>gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120070

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    ccttcttaatttattcatc 58
             |||||||||||||||||||
Sbjct: 44358 ccttcttaatttattcatc 44340



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>gb|AC144365.3| Didelphis virginiana clone LB3-90O15, complete sequence
          Length = 145168

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 68    gggtataaaaatggaatcccagg 90
             ||||||||||| |||||||||||
Sbjct: 70095 gggtataaaaagggaatcccagg 70117



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>gb|AE003667.3| Drosophila melanogaster chromosome 2L, section 76 of 83 of the complete
              sequence
          Length = 257666

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 63     ggagcgggtataaaaatgg 81
              |||||||||||||||||||
Sbjct: 113239 ggagcgggtataaaaatgg 113221



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>gb|AC002443.1|AC002443 Drosophila melanogaster DNA sequence (P1 DS02109 (D53)), complete
            sequence
          Length = 79826

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 63   ggagcgggtataaaaatgg 81
            |||||||||||||||||||
Sbjct: 6781 ggagcgggtataaaaatgg 6763



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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 38.2 bits (19), Expect = 3.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 68      gggtataaaaatggaatcccagg 90
               ||||||||||| |||||||||||
Sbjct: 1090400 gggtataaaaagggaatcccagg 1090422


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 845,807
Number of Sequences: 3902068
Number of extensions: 845807
Number of successful extensions: 60843
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60783
Number of HSP's gapped (non-prelim): 60
length of query: 91
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 70
effective length of database: 17,151,101,840
effective search space: 1200577128800
effective search space used: 1200577128800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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