>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor|
          Length = 257

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 38/46 (82%), Positives = 44/46 (95%)
 Frame = -3

Query: 453 RKKVETELGTKMIHLKMRCSGIGSEWGKITLIGTSGISGSYVEMRA 316
           +KKVE ELGTKMIHLKMRCSG+GSEWGK+T++GTSG+SGSYVE RA
Sbjct: 212 KKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLSGSYVEQRA 257

>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
 Frame = -1

Query: 386 GLSGERSP--------LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 231
           G+SG   P        L  P+G QGP+ R G  G + P  +    G +G   +   PG P
Sbjct: 802 GISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTP 861

Query: 230 FP 225
            P
Sbjct: 862 GP 863

>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -1

Query: 386 GLSGERSP--LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 231
           G  G R P  +  P+G+ GP    G DGT      P T G+ GS     +PG P
Sbjct: 283 GSPGIRGPQGITGPKGATGPPGINGKDGT------PGTPGMKGSAGQAGQPGSP 330



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
 Frame = -1

Query: 386 GLSGERSPL--LAPQGSQGPMLR*GHDGTLIPEPWP------NTDGLTGSCVSISEPGV 234
           G  GER P+    PQG QGP    G  G   P+  P       + G TG    + +PGV
Sbjct: 388 GDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKVGDPGV 446

>CO1A2_BOVIN (P02465) Collagen alpha-2(I) chain precursor|
          Length = 1364

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
 Frame = -1

Query: 386 GLSGERSP--------LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 231
           G+SG   P        L  P+G QGP+ R G  G   P  +    G +G   +   PG P
Sbjct: 800 GISGPPGPPGPAGKEGLRGPRGDQGPVGRSGETGASGPPGFVGEKGPSGEPGTAGPPGTP 859

Query: 230 FP 225
            P
Sbjct: 860 GP 861

>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 386 GLSGERSPLLA--PQGSQGPMLR*GHDGTLIPEPW---PNTDGLTGSCVSISEPGV 234
           G  GE  P  A  P+G+QGP    G  G+  P      P TDG+ G+  S   PG+
Sbjct: 303 GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 358

>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -1

Query: 386 GLSGERSPLLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVPFP 225
           G +G+   L  P+G QGP+ R G  G   P  +    G +G   +   PG P P
Sbjct: 811 GAAGKEG-LRGPRGDQGPVGRTGETGASGPPGFTGEKGPSGEPGTAGPPGTPGP 863

>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)|
          Length = 747

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 386 GLSGERSPLLA--PQGSQGPMLR*GHDGTLIPEPW---PNTDGLTGSCVSISEPGV 234
           G  GE  P  A  P+G+QGP    G  G+  P      P TDG+ G+  S   PG+
Sbjct: 187 GAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGAAGNPGTDGIPGAKGSAGAPGI 242

>MPK3_ARATH (Q39023) Mitogen-activated protein kinase homolog 3 (EC 2.7.11.24)|
           (MAP kinase 3) (AtMPK3)
          Length = 370

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 338 PEIPEVPIRVIFPHSDPMPLHLIFR*IIFVPN 433
           P  P  P+  +F H +PM + L+ R + F PN
Sbjct: 279 PNFPRQPLAKLFSHVNPMAIDLVDRMLTFDPN 310

>V137_ASFL5 (P26709) LIS 137 protein precursor|
          Length = 137

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -3

Query: 105 RFCWFCFVAQTMMDGLCTSRMLRNN---IFEYDLSILC 1
           RFCW C       DG+CTSR+  NN   I E D    C
Sbjct: 52  RFCWDC------EDGICTSRVWGNNSTSIIENDYVKYC 83

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -1

Query: 386 GLSGERSP--LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVP 231
           G  G R P  +  P+G  GP    G DGT      P   G+ GS   +  PG P
Sbjct: 282 GSQGARGPQGITGPKGITGPPGIDGKDGT------PGIPGMKGSAGQVGRPGSP 329



 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
 Frame = -1

Query: 386 GLSGERSPL--LAPQGSQGPMLR*GHDGTLIPEPWP------NTDGLTGSCVSISEPGV 234
           G  GER P+    PQG QGP    G  G   P+  P       + G TG    + +PGV
Sbjct: 387 GDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGIKGDKGSPGKTGPRGGVGDPGV 445

>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 386 GLSGERSP--LLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVPFP 225
           G +GE  P  LL P+GS GP  R G  G          DG  G+  ++  PG P P
Sbjct: 593 GQAGEPGPRGLLGPRGSPGPTGRPGVTG---------IDGAPGAKGNVGPPGEPGP 639

>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 24/67 (35%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
 Frame = -1

Query: 386 GLSGERSPLLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLT---------GSCVSISEPGV 234
           G+ G+R P   P G  GP    G  G       P  DGLT         GS     EPGV
Sbjct: 290 GIDGDRGPK-GPPGPPGPAGEPGKPGAPGKPGTPGADGLTGPDGSPGSIGSKGQKGEPGV 348

Query: 233 PFPFIFP 213
           P    FP
Sbjct: 349 PGSRGFP 355

>VPS16_YEAST (Q03308) Vacuolar protein sorting-associated protein VPS16|
          Length = 798

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 114 MYLLQQESLERKELLKVSAHVLTISLLLA 200
           +Y L  +S+  KE +KV  + LTISLL+A
Sbjct: 513 LYNLDDDSIALKECIKVQNYSLTISLLIA 541

>PA21B_PSETE (Q9W7J4) Phospholipase A2 1 precursor (EC 3.1.1.4)|
           (Phosphatidylcholine 2-acylhydrolase) (Pt-PLA1)
          Length = 154

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 226 GNGTPGSDIDTQLPVRPSVFGHGSGMRVPSCPHLNIGP 339
           G+GTP  D+D    V  + FG     ++P+C +L  GP
Sbjct: 60  GSGTPVDDLDRCCQVHDNCFGDAE--KLPACNYLFSGP 95

>CO4A6_HUMAN (Q14031) Collagen alpha-6(IV) chain precursor|
          Length = 1691

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -1

Query: 386 GLSGERSPLLAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVPFPFIF 216
           GL G R P+   +G QGP  + G  GTL    +P  +G  G      + G+P P +F
Sbjct: 297 GLPGPRGPM-GSEGVQGPPGQQGKKGTL---GFPGLNGFQGIEGQKGDIGLPGPDVF 349

>HUTG_VIBCH (Q9KSQ2) Formimidoylglutamase (EC 3.5.3.8) (Formiminoglutamase)|
           (Formiminoglutamate hydrolase)
          Length = 336

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 361 KGDLSPLRPYATASHFQVNHFCPQLGLHF 447
           + +L+P+RP +     Q++HFC Q G  F
Sbjct: 166 ESELAPVRPSSGTPFNQIHHFCQQQGWDF 194

>GATA_SYNEL (Q8DK65) Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.-)|
           (Glu-ADT subunit A)
          Length = 482

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/90 (22%), Positives = 39/90 (43%), Gaps = 15/90 (16%)
 Frame = -3

Query: 417 IHLKMRCSGIGSEWGKITLIGTSGISGSYVEMRA*WNSHSRTMAKH*WSDGKLRIDI--- 247
           +++K R  G G+E  +  +IGT  +S  Y +         RT+ K  ++    ++D+   
Sbjct: 338 MYMKTRAQGFGAEVKRRIMIGTYALSAGYYDAYYLRAQKVRTLIKEDFARAFEQVDVLIC 397

Query: 246 ------------RTRCSVSFYLSPVAAMPI 193
                       +T   +S YLS +  +P+
Sbjct: 398 PTAPTTAFKAGEKTADPLSMYLSDLMTIPV 427

>CO2A1_MOUSE (P28481) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1459

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 386 GLSGERSPLLA--PQGSQGPMLR*GHDGTLIPEPW---PNTDGLTGSCVSISEPGV 234
           G  GE  P  A  P+G+QG     G+ G+  P      P TDG+ G+  S   PG+
Sbjct: 344 GAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 399

>CO2A1_RAT (P05539) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1419

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -1

Query: 386 GLSGERSPLLA--PQGSQGPMLR*GHDGTLIPEPW---PNTDGLTGSCVSISEPGV 234
           G  GE  P  A  P+G+QG     G+ G+  P      P TDG+ G+  S   PG+
Sbjct: 304 GAKGEAGPTGARGPEGAQGSRGEPGNPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 359

>YB02_YEAST (P38282) Protein YBR152W|
          Length = 291

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 48  ETYKDHPSWFEQQNKTNRTSRNMYLLQQESLERKELLKVSA 170
           ++ K+   WFE+QN+  +  R + L +Q   E  E  +  A
Sbjct: 181 DSEKERQKWFERQNERKQKHRRIQLAKQRESEEYEAKRFEA 221

>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = -1

Query: 386  GLSGERSPL--LAPQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVPFP 225
            G SGER P   + P G  GP    G +G+   E  P  DG  G+     E G   P
Sbjct: 978  GASGERGPPGPMGPPGLAGPPGESGREGSPGAEGSPGRDGAPGAKGDRGETGPAGP 1033

>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = -1

Query: 353  PQGSQGPMLR*GHDGTLIPEPWPNTDGLTGSCVSISEPGVPFP 225
            P+G  GP  R G  G   P   P   G  G+   I  PG P P
Sbjct: 898  PRGETGPAGRPGEPGPAGPPGPPGEKGSPGADGPIGAPGTPGP 940


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,571,705
Number of Sequences: 219361
Number of extensions: 1496402
Number of successful extensions: 4199
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4181
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)