ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45f04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intr... 149 7e-33
2gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic prote... 113 4e-22
3gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic prote... 94 4e-16
4gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic prote... 94 4e-16
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
6dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
7dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
8dbj|AK104464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
9dbj|AK104377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
10dbj|AK104270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
11dbj|AK099616.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
12dbj|AK099141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
13dbj|AK099015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
14dbj|AK073531.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
15dbj|AK100193.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
16emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 ... 42 1.1
17gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosom... 40 4.5
18ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A... 40 4.5
19ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A... 40 4.5
20gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, co... 40 4.5
21gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complet... 40 4.5
22gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosom... 40 4.5
23gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A),... 40 4.5
24gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A),... 40 4.5
25dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788 40 4.5
26gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, c... 40 4.5
27gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone ... 40 4.5
28gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 4.5
29gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, compl... 40 4.5
30tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 4.5 
>gb|U86763.1|TAU86763 Triticum aestivum delta-type tonoplast intrinsic protein mRNA,
           complete cds
          Length = 1067

 Score =  149 bits (75), Expect = 7e-33
 Identities = 178/213 (83%), Gaps = 17/213 (7%)
 Strand = Plus / Minus

                                                                       
Query: 138 gcttcgatctgaaccaaacaacatgacgttcttcacatcatcgagacattc-------tg 190
           ||||||||||||||||||||||| || ||||||||||||||||| ||||||       ||
Sbjct: 932 gcttcgatctgaaccaaacaacaggatgttcttcacatcatcgaaacattcgtgagactg 873

                                                                       
Query: 191 accaccacgcacgcacttttttatgttgccgaaggcatcatggaaaccaaacaccgaacg 250
            |||||||| ||||||||||| |||||||||||||||| |||||         |||||||
Sbjct: 872 cccaccacgtacgcacttttt-atgttgccgaaggcattatgga---------ccgaacg 823

                                                                       
Query: 251 acccttcacatggatggcttaatagtcgttgctggcgacgggggtgtggttgtcgcacat 310
           || |||| ||||| ||||||| |||||||||| |||||||||| |||||| ||| |||||
Sbjct: 822 actcttcccatggctggcttagtagtcgttgccggcgacggggctgtggtcgtcccacat 763

                                            
Query: 311 gtacaggtaccggtagacgatgccggcgaggcc 343
           ||| ||||| ||||| |||| ||||||||||||
Sbjct: 762 gtataggtatcggtaaacgacgccggcgaggcc 730



 Score =  133 bits (67), Expect = 4e-28
 Identities = 93/101 (92%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                        
Query: 18   tcttattgaatcgcataaggaaactcaactgaagaattctcaaaccccaacaacttcaca 77
            ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 1036 tcttattgaatcgcataaggaaactcaactgaaaaattctcaaaccccaccaacttcaca 977

                                                     
Query: 78   acatcacattatattacagatagagaagcatgcatcatcca 118
            ||||||||||   ||||||||| || | |||||||||||||
Sbjct: 976  acatcacatt---ttacagataaaggaacatgcatcatcca 939
to top
>gb|AY525641.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;3 mRNA,
           complete cds
          Length = 829

 Score =  113 bits (57), Expect = 4e-22
 Identities = 72/77 (93%)
 Strand = Plus / Minus

                                                                       
Query: 267 gcttaatagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtag 326
           ||||| |||||||||| |||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 800 gcttagtagtcgttgccggcgacggcggtgtggtcgtcgcacatgtacaggtaccggtag 741

                            
Query: 327 acgatgccggcgaggcc 343
           |||| ||||||||||||
Sbjct: 740 acgacgccggcgaggcc 724
to top
>gb|AY525640.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;2 mRNA,
           complete cds
          Length = 853

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                       
Query: 273 tagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatg 332
           |||||||||| |||||||| | |||||| |||||||||||||| |||||||||||||| |
Sbjct: 797 tagtcgttgccggcgacggagctgtggtcgtcgcacatgtacacgtaccggtagacgacg 738

                      
Query: 333 ccggcgaggcc 343
           |||||||||||
Sbjct: 737 ccggcgaggcc 727
to top
>gb|AY525639.1| Triticum aestivum delta tonoplast intrinsic protein TIP2;1 mRNA,
           complete cds
          Length = 817

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 71/79 (89%)
 Strand = Plus / Minus

                                                                       
Query: 265 tggcttaatagtcgttgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggt 324
           ||||||| |||||||||| |||||||| | |||||| |||||||||||| ||||| ||||
Sbjct: 806 tggcttagtagtcgttgccggcgacggagctgtggtcgtcgcacatgtataggtatcggt 747

                              
Query: 325 agacgatgccggcgaggcc 343
           |||||| ||||||||||||
Sbjct: 746 agacgacgccggcgaggcc 728
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                            
Query: 280      tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
                ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 13251125 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 13251066

                    
Query: 340      ggcc 343
                ||||
Sbjct: 13251065 ggcc 13251062
to top
>dbj|AP005449.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0427E01
          Length = 146395

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                         
Query: 280   tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
             ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 12935 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 12876

                 
Query: 340   ggcc 343
             ||||
Sbjct: 12875 ggcc 12872
to top
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0012F14
          Length = 168629

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                          
Query: 280    tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
              ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 168313 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 168254

                  
Query: 340    ggcc 343
              ||||
Sbjct: 168253 ggcc 168250
to top
>dbj|AK104464.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C06, full
           insert sequence
          Length = 1194

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 825 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 766

               
Query: 340 ggcc 343
           ||||
Sbjct: 765 ggcc 762
to top
>dbj|AK104377.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-G09, full
           insert sequence
          Length = 1196

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 768

               
Query: 340 ggcc 343
           ||||
Sbjct: 767 ggcc 764
to top
>dbj|AK104270.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-F03, full
           insert sequence
          Length = 1214

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 827 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 768

               
Query: 340 ggcc 343
           ||||
Sbjct: 767 ggcc 764
to top
>dbj|AK099616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J20, full
           insert sequence
          Length = 1197

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 769

               
Query: 340 ggcc 343
           ||||
Sbjct: 768 ggcc 765
to top
>dbj|AK099141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023055A02, full
           insert sequence
          Length = 1195

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 767

               
Query: 340 ggcc 343
           ||||
Sbjct: 766 ggcc 763
to top
>dbj|AK099015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H02, full
           insert sequence
          Length = 1202

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 828 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 769

               
Query: 340 ggcc 343
           ||||
Sbjct: 768 ggcc 765
to top
>dbj|AK073531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044F19, full
           insert sequence
          Length = 1220

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 57/64 (89%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | |||||||||||||| ||||||||
Sbjct: 826 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaccggtagacgaggccggcga 767

               
Query: 340 ggcc 343
           ||||
Sbjct: 766 ggcc 763
to top
>dbj|AK100193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036J06, full
           insert sequence
          Length = 1074

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 280 tgctggcgacgggggtgtggttgtcgcacatgtacaggtaccggtagacgatgccggcga 339
           ||||||| ||||||| ||||| | |||||||||| | ||| |||||||||| ||||||||
Sbjct: 705 tgctggcaacgggggcgtggtcgccgcacatgtagacgtaacggtagacgaggccggcga 646

               
Query: 340 ggcc 343
           ||||
Sbjct: 645 ggcc 642
to top
>emb|BX470264.22| Zebrafish DNA sequence from clone CH211-252F13 in linkage group 7,
             complete sequence
          Length = 168673

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 72    ttcacaacatcacattatatt 92
             |||||||||||||||||||||
Sbjct: 78807 ttcacaacatcacattatatt 78827
to top
>gb|AC165149.5| Mus musculus BAC clone RP24-114C10 from chromosome 13, complete
             sequence
          Length = 191162

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    ggaaactcaactgaagaatt 55
             ||||||||||||||||||||
Sbjct: 13923 ggaaactcaactgaagaatt 13942
to top
>ref|NM_020416.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform (PPP2R2C), transcript variant 1,
            mRNA
          Length = 4117

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   aaaccccaacaacttcacaa 78
            ||||||||||||||||||||
Sbjct: 3856 aaaccccaacaacttcacaa 3837
to top
>ref|NM_181876.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform (PPP2R2C), transcript variant 2,
            mRNA
          Length = 4087

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   aaaccccaacaacttcacaa 78
            ||||||||||||||||||||
Sbjct: 3826 aaaccccaacaacttcacaa 3807
to top
>gb|AC121551.11| Mus musculus chromosome 1, clone RP24-144H23, complete sequence
          Length = 168683

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     ggaaactcaactgaagaatt 55
              ||||||||||||||||||||
Sbjct: 136133 ggaaactcaactgaagaatt 136114
to top
>gb|AC006012.2| Homo sapiens PAC clone RP5-942I16 from 7, complete sequence
          Length = 121598

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 224    ggcatcatggaaaccaaaca 243
              ||||||||||||||||||||
Sbjct: 113843 ggcatcatggaaaccaaaca 113824
to top
>gb|AC117212.5| Mus musculus BAC clone RP23-302A24 from chromosome 6, complete sequence
          Length = 212735

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aaaccccaacaacttcacaa 78
             ||||||||||||||||||||
Sbjct: 57462 aaaccccaacaacttcacaa 57481
to top
>gb|BC021735.2| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory
           subunit B (PR 52), gamma isoform, mRNA (cDNA clone
           IMAGE:4816112)
          Length = 1172

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 59  aaaccccaacaacttcacaa 78
           ||||||||||||||||||||
Sbjct: 918 aaaccccaacaacttcacaa 899
to top
>gb|BC045682.1| Homo sapiens protein phosphatase 2 (formerly 2A), regulatory subunit
            B (PR 52), gamma isoform, mRNA (cDNA clone IMAGE:5300526)
          Length = 2161

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   aaaccccaacaacttcacaa 78
            ||||||||||||||||||||
Sbjct: 1900 aaaccccaacaacttcacaa 1881
to top
>dbj|AK127386.1| Homo sapiens cDNA FLJ45468 fis, clone BRSTN2015788
          Length = 1737

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 59   aaaccccaacaacttcacaa 78
            ||||||||||||||||||||
Sbjct: 1499 aaaccccaacaacttcacaa 1480
to top
>gb|AC068733.12| Homo sapiens chromosome 11, clone RP11-304C12, complete sequence
          Length = 191656

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 55     tctcaaaccccaacaacttcacaa 78
              ||||||||||||||| ||||||||
Sbjct: 107696 tctcaaaccccaacaccttcacaa 107719
to top
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete
              sequence
          Length = 222430

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    tctgaaccaaacaacatgac 164
              ||||||||||||||||||||
Sbjct: 111593 tctgaaccaaacaacatgac 111574
to top
>gb|AC084327.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-367K14, complete
             sequence
          Length = 108667

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    aaaccccaacaacttcacaa 78
             ||||||||||||||||||||
Sbjct: 32732 aaaccccaacaacttcacaa 32713
to top
>gb|AC116317.4| Homo sapiens BAC clone RP11-1406H17 from 4, complete sequence
          Length = 160943

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aaaccccaacaacttcacaa 78
             ||||||||||||||||||||
Sbjct: 82311 aaaccccaacaacttcacaa 82330
to top
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 145     tctgaaccaaacaacatgac 164
               ||||||||||||||||||||
Sbjct: 1893522 tctgaaccaaacaacatgac 1893503


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,784,561
Number of Sequences: 3902068
Number of extensions: 2784561
Number of successful extensions: 49619
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49549
Number of HSP's gapped (non-prelim): 68
length of query: 343
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 321
effective length of database: 17,147,199,772
effective search space: 5504251126812
effective search space used: 5504251126812
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top