ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45f03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
2dbj|AK065252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 101 2e-18
4emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa... 101 2e-18
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.079
6dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.079
7ref|NM_122963.3| Arabidopsis thaliana unknown protein AT5G35730 ... 44 0.31
8ref|XM_464427.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.31
9gb|AY070048.1| Arabidopsis thaliana unknown protein (At5g35730) ... 44 0.31
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
11emb|BX829738.1|CNS0A024 Arabidopsis thaliana Full-length cDNA Co... 44 0.31
12emb|BX832491.1|CNS09ZSV Arabidopsis thaliana Full-length cDNA Co... 44 0.31
13emb|BX831502.1|CNS09ZSZ Arabidopsis thaliana Full-length cDNA Co... 44 0.31
14emb|BX829787.1|CNS09ZZQ Arabidopsis thaliana Full-length cDNA Co... 44 0.31
15gb|AY086064.1| Arabidopsis thaliana clone 20919 mRNA, complete s... 44 0.31
16dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
17dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.31
18dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.31
19dbj|AK072184.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.31
20gb|BT001971.1| Arabidopsis thaliana clone U18818 unknown protein... 44 0.31
21gb|AC120148.13| Mus musculus chromosome 9, clone RP24-225E14, co... 42 1.2
22gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome... 42 1.2
23emb|CR792439.12| Zebrafish DNA sequence from clone DKEYP-100A1 i... 42 1.2
24gb|AC005083.1| Homo sapiens BAC clone CTA-281G5 from 7, complete... 42 1.2
25gb|AC105923.6| Homo sapiens BAC clone RP11-641A24 from 4, comple... 42 1.2
26gb|AC140262.4| Mus musculus BAC clone RP23-459B6 from chromosome... 42 1.2
27gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, comple... 42 1.2
28emb|AL603843.15| Mouse DNA sequence from clone RP23-412D17 on ch... 42 1.2
29gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, com... 40 4.9
30gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 4.9
31gb|AC140354.2| Mus musculus BAC clone RP24-249A13 from chromosom... 40 4.9
32gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, comp... 40 4.9
33gb|AC125190.4| Mus musculus BAC clone RP23-288O24 from chromosom... 40 4.9
34ref|XM_571619.1| Cryptococcus neoformans var. neoformans JEC21 m... 40 4.9
35gb|AC164653.3| Gallus gallus BAC clone CH261-187D17 from chromos... 40 4.9
36emb|BX831256.1|CNS09ZD3 Arabidopsis thaliana Full-length cDNA Co... 40 4.9
37gb|AC124744.3| Mus musculus BAC clone RP23-223E16 from 13, compl... 40 4.9
38emb|BX908723.12| Zebrafish DNA sequence from clone DKEY-28K21 in... 40 4.9
39emb|AL592433.12| Mouse DNA sequence from clone RP23-445F7 on chr... 40 4.9 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  101 bits (51), Expect = 2e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 262      gatgacatttcaaaattttgcttggctgtcatcttgttccactcattctcgacgcggaaa 321
                ||||||||||| | | | |||||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 25009776 gatgacatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaag 25009835

                                               
Query: 322      aacacccactggaaccgcctcaccatttcca 352
                ||||||||||| ||||||||||  |||||||
Sbjct: 25009836 aacacccactgaaaccgcctcaatatttcca 25009866
to top
>dbj|AK065252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J09, full
            insert sequence
          Length = 1976

 Score =  101 bits (51), Expect = 2e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  gatgacatttcaaaattttgcttggctgtcatcttgttccactcattctcgacgcggaaa 321
            ||||||||||| | | | |||||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 1635 gatgacatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaag 1576

                                           
Query: 322  aacacccactggaaccgcctcaccatttcca 352
            ||||||||||| ||||||||||  |||||||
Sbjct: 1575 aacacccactgaaaccgcctcaatatttcca 1545
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  101 bits (51), Expect = 2e-18
 Identities = 81/91 (89%)
 Strand = Plus / Plus

                                                                            
Query: 262      gatgacatttcaaaattttgcttggctgtcatcttgttccactcattctcgacgcggaaa 321
                ||||||||||| | | | |||||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 24937982 gatgacatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaag 24938041

                                               
Query: 322      aacacccactggaaccgcctcaccatttcca 352
                ||||||||||| ||||||||||  |||||||
Sbjct: 24938042 aacacccactgaaaccgcctcaatatttcca 24938072
to top
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146686

 Score =  101 bits (51), Expect = 2e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                         
Query: 262   gatgacatttcaaaattttgcttggctgtcatcttgttccactcattctcgacgcggaaa 321
             ||||||||||| | | | |||||||||||||||||||||||||| |||||||| ||||| 
Sbjct: 97391 gatgacatttccagactctgcttggctgtcatcttgttccactcgttctcgacacggaag 97332

                                            
Query: 322   aacacccactggaaccgcctcaccatttcca 352
             ||||||||||| ||||||||||  |||||||
Sbjct: 97331 aacacccactgaaaccgcctcaatatttcca 97301
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 77      atggcacatgtgccaacaacttc 99
               |||||||||||||||||||||||
Sbjct: 8449963 atggcacatgtgccaacaacttc 8449985
to top
>dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0054E15
          Length = 142898

 Score = 46.1 bits (23), Expect = 0.079
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 77    atggcacatgtgccaacaacttc 99
             |||||||||||||||||||||||
Sbjct: 75312 atggcacatgtgccaacaacttc 75334
to top
>ref|NM_122963.3| Arabidopsis thaliana unknown protein AT5G35730 mRNA, complete cds
          Length = 1761

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1529 atcttgttccactcattctctactctgaaaaataccca 1492
to top
>ref|XM_464427.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3544

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 257  tatcggatgacatttcaaaatt 278
            ||||||||||||||||||||||
Sbjct: 1205 tatcggatgacatttcaaaatt 1226
to top
>gb|AY070048.1| Arabidopsis thaliana unknown protein (At5g35730) mRNA, complete cds
          Length = 1669

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1519 atcttgttccactcattctctactctgaaaaataccca 1482
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 257     tatcggatgacatttcaaaatt 278
               ||||||||||||||||||||||
Sbjct: 5148342 tatcggatgacatttcaaaatt 5148363
to top
>emb|BX829738.1|CNS0A024 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB32ZC10 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1566

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1483 atcttgttccactcattctctactctgaaaaataccca 1446
to top
>emb|BX832491.1|CNS09ZSV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH76ZG03 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1683

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1472 atcttgttccactcattctctactctgaaaaataccca 1435
to top
>emb|BX831502.1|CNS09ZSZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH11ZC01 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1725

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1530 atcttgttccactcattctctactctgaaaaataccca 1493
to top
>emb|BX829787.1|CNS09ZZQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB37ZB02 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1657

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1496 atcttgttccactcattctctactctgaaaaataccca 1459
to top
>gb|AY086064.1| Arabidopsis thaliana clone 20919 mRNA, complete sequence
          Length = 1717

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1510 atcttgttccactcattctctactctgaaaaataccca 1473
to top
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0453H10
          Length = 133464

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 257    tatcggatgacatttcaaaatt 278
              ||||||||||||||||||||||
Sbjct: 108840 tatcggatgacatttcaaaatt 108861
to top
>dbj|AP000366.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0437H03
          Length = 170173

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 257   tatcggatgacatttcaaaatt 278
             ||||||||||||||||||||||
Sbjct: 41795 tatcggatgacatttcaaaatt 41816
to top
>dbj|AB011485.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MXH1
          Length = 87210

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 292   atcttgttccactcattctcgacgcggaaaaacaccca 329
             |||||||||||||||||||| || | |||||| |||||
Sbjct: 42645 atcttgttccactcattctctactctgaaaaataccca 42608
to top
>dbj|AK072184.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013136H24, full
            insert sequence
          Length = 3544

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 257  tatcggatgacatttcaaaatt 278
            ||||||||||||||||||||||
Sbjct: 1205 tatcggatgacatttcaaaatt 1226
to top
>gb|BT001971.1| Arabidopsis thaliana clone U18818 unknown protein (At5g35730) mRNA,
            complete cds
          Length = 1405

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 292  atcttgttccactcattctcgacgcggaaaaacaccca 329
            |||||||||||||||||||| || | |||||| |||||
Sbjct: 1295 atcttgttccactcattctctactctgaaaaataccca 1258
to top
>gb|AC120148.13| Mus musculus chromosome 9, clone RP24-225E14, complete sequence
          Length = 201783

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 129   gccttctgagctctagagatg 149
             |||||||||||||||||||||
Sbjct: 90211 gccttctgagctctagagatg 90231
to top
>gb|AC122930.4| Mus musculus BAC clone RP23-13L19 from chromosome 9, complete sequence
          Length = 224108

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 129   gccttctgagctctagagatg 149
             |||||||||||||||||||||
Sbjct: 14494 gccttctgagctctagagatg 14474
to top
>emb|CR792439.12| Zebrafish DNA sequence from clone DKEYP-100A1 in linkage group 8,
             complete sequence
          Length = 170028

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 186   attgttttgaatgtagggtca 206
             |||||||||||||||||||||
Sbjct: 63627 attgttttgaatgtagggtca 63607
to top
>gb|AC005083.1| Homo sapiens BAC clone CTA-281G5 from 7, complete sequence
          Length = 146285

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 179   ctataagattgttttgaatgt 199
             |||||||||||||||||||||
Sbjct: 78537 ctataagattgttttgaatgt 78557
to top
>gb|AC105923.6| Homo sapiens BAC clone RP11-641A24 from 4, complete sequence
          Length = 154354

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 186   attgttttgaatgtagggtcagact 210
             ||||||||||||||||| |||||||
Sbjct: 66782 attgttttgaatgtaggctcagact 66758
to top
>gb|AC140262.4| Mus musculus BAC clone RP23-459B6 from chromosome 12, complete sequence
          Length = 179484

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 340   ctcaccatttccaaagctgtt 360
             |||||||||||||||||||||
Sbjct: 65971 ctcaccatttccaaagctgtt 65951
to top
>gb|AC125067.4| Mus musculus BAC clone RP23-431C5 from 12, complete sequence
          Length = 192938

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 340    ctcaccatttccaaagctgtt 360
              |||||||||||||||||||||
Sbjct: 185493 ctcaccatttccaaagctgtt 185473
to top
>emb|AL603843.15| Mouse DNA sequence from clone RP23-412D17 on chromosome 15, complete
             sequence
          Length = 203649

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 41    ttactatcactgtttggattc 61
             |||||||||||||||||||||
Sbjct: 39347 ttactatcactgtttggattc 39327
to top
>gb|AC102418.9| Mus musculus chromosome 3, clone RP24-499L10, complete sequence
          Length = 208274

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ataacttgtcttttgatatt 42
             ||||||||||||||||||||
Sbjct: 99753 ataacttgtcttttgatatt 99772
to top
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
               sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 256     atatcggatgacatttcaaa 275
               ||||||||||||||||||||
Sbjct: 1396931 atatcggatgacatttcaaa 1396912
to top
>gb|AC140354.2| Mus musculus BAC clone RP24-249A13 from chromosome 12, complete sequence
          Length = 157998

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     ttatacatatggcacatgtg 88
              ||||||||||||||||||||
Sbjct: 107399 ttatacatatggcacatgtg 107380
to top
>gb|AC110376.4| Mus musculus chromosome 12 clone RP23-441E7, complete sequence
          Length = 190516

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ttatacatatggcacatgtg 88
             ||||||||||||||||||||
Sbjct: 50602 ttatacatatggcacatgtg 50583
to top
>gb|AC125190.4| Mus musculus BAC clone RP23-288O24 from chromosome 13, complete
             sequence
          Length = 152080

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 276   attttgcttggctgtcatct 295
             ||||||||||||||||||||
Sbjct: 32849 attttgcttggctgtcatct 32868
to top
>ref|XM_571619.1| Cryptococcus neoformans var. neoformans JEC21 monocarboxylic acid
           transporter (CNF04800) partial mRNA
          Length = 1633

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 atatcggatgacatttcaaa 275
           ||||||||||||||||||||
Sbjct: 43  atatcggatgacatttcaaa 24
to top
>gb|AC164653.3| Gallus gallus BAC clone CH261-187D17 from chromosome unknown, complete
             sequence
          Length = 224272

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    cactgtttggattcaagagtgtta 71
             |||||||||| |||||||||||||
Sbjct: 49633 cactgtttggtttcaagagtgtta 49656
to top
>emb|BX831256.1|CNS09ZD3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS72ZB09 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1660

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 292  atcttgttccactcattctc 311
            ||||||||||||||||||||
Sbjct: 1461 atcttgttccactcattctc 1442
to top
>gb|AC124744.3| Mus musculus BAC clone RP23-223E16 from 13, complete sequence
          Length = 199767

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 276    attttgcttggctgtcatct 295
              ||||||||||||||||||||
Sbjct: 195413 attttgcttggctgtcatct 195432
to top
>emb|BX908723.12| Zebrafish DNA sequence from clone DKEY-28K21 in linkage group 18,
             complete sequence
          Length = 78282

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    acttgtcttttgatattact 45
             ||||||||||||||||||||
Sbjct: 28574 acttgtcttttgatattact 28555
to top
>emb|AL592433.12| Mouse DNA sequence from clone RP23-445F7 on chromosome 1, complete
             sequence
          Length = 97685

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tagcataacttgtcttttga 38
             ||||||||||||||||||||
Sbjct: 30639 tagcataacttgtcttttga 30620


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,215,411
Number of Sequences: 3902068
Number of extensions: 3215411
Number of successful extensions: 56191
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56060
Number of HSP's gapped (non-prelim): 131
length of query: 368
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 346
effective length of database: 17,147,199,772
effective search space: 5932931121112
effective search space used: 5932931121112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top