ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45f02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase I... 30 2.7
2AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 1... 30 4.6
3ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44 30 4.6

>AT11C_HUMAN (Q8NB49) Probable phospholipid-transporting ATPase IG (EC 3.6.3.1)|
            (ATPase class I type 11C) (ATPase IG) (ATPase IQ) (ATPase
            class VI type 11C)
          Length = 1132

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 124  YFFFLRIPRYITTWVYVLLCLFVSLFARV 38
            YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 1057 YFVFAQMLSSVSTWLAIILLIFISLFPEI 1085



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>AT11C_MOUSE (Q9QZW0) Probable phospholipid-transporting ATPase 11C (EC 3.6.3.1)|
           (Fragment)
          Length = 347

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -2

Query: 124 YFFFLRIPRYITTWVYVLLCLFVSLFARV 38
           YF F ++   ++TW+ ++L +F+SLF  +
Sbjct: 285 YFVFAQMLCSVSTWLAIILLIFISLFPEI 313



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>ECP44_DAUCA (Q9XJ56) Phosphoprotein ECPP44|
          Length = 258

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -3

Query: 486 EEEEEDGHRQDKDE--GLKMKLFRRFHHHHVHDSENEVDEVEELARKLG 346
           EE EE G ++ K E  GLK K+  + HH    D+   V+ V E  +K G
Sbjct: 93  EEVEEGGEKKKKKEKKGLKEKIEEKIHHKE-EDTSVPVEVVTEPEKKKG 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,413,043
Number of Sequences: 219361
Number of extensions: 936733
Number of successful extensions: 3668
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3588
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3478785780
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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