ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45f01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475238.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 969 Score = 73.8 bits (37), Expect = 1e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgccg 119 |||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 962 ggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 918
>gb|AC124836.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092E21, complete sequence Length = 132649 Score = 73.8 bits (37), Expect = 1e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgccg 119 |||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 79106 ggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 79062
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 73.8 bits (37), Expect = 1e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgccg 119 |||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 20535627 ggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 20535583
>dbj|AK107746.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-H04, full insert sequence Length = 841 Score = 73.8 bits (37), Expect = 1e-10 Identities = 43/45 (95%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgccg 119 |||||||||||| ||||||||||||| |||||||||||||||||| Sbjct: 554 ggcttgccccagtacatgaggatgtcctggaggagcgggtcgccg 510
>ref|XM_463543.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 912 Score = 61.9 bits (31), Expect = 6e-07 Identities = 40/43 (93%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgc 117 |||||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 905 ggcttgccccagtacatgaggatgtcctggaggagggggtcgc 863
>gb|AY742218.1| Saccharum officinarum NAC23 mRNA, complete cds Length = 891 Score = 61.9 bits (31), Expect = 6e-07 Identities = 43/47 (91%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgccggc 121 |||||||||||| ||||||||||||| || || |||||||||||||| Sbjct: 884 ggcttgccccagtacatgaggatgtcctgcagcagcgggtcgccggc 838
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 6e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgc 117 |||||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 38392767 ggcttgccccagtacatgaggatgtcctggaggagggggtcgc 38392809
>gb|AF254558.1|AF254558 Oryza sativa NAC6 (NAC6) gene, complete cds Length = 4817 Score = 61.9 bits (31), Expect = 6e-07 Identities = 40/43 (93%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgc 117 |||||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 4015 ggcttgccccagtacatgaggatgtcctggaggagggggtcgc 3973
>dbj|AP003561.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1065E10 Length = 183580 Score = 61.9 bits (31), Expect = 6e-07 Identities = 40/43 (93%) Strand = Plus / Plus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgc 117 |||||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 153592 ggcttgccccagtacatgaggatgtcctggaggagggggtcgc 153634
>dbj|AK068392.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149P14, full insert sequence Length = 1529 Score = 61.9 bits (31), Expect = 6e-07 Identities = 40/43 (93%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgc 117 |||||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 1016 ggcttgccccagtacatgaggatgtcctggaggagggggtcgc 974
>dbj|AB028185.1| Oryza sativa mRNA for OsNAC6 protein, complete cds Length = 1423 Score = 61.9 bits (31), Expect = 6e-07 Identities = 40/43 (93%) Strand = Plus / Minus Query: 75 ggcttgccccagaacatgaggatgtcttggaggagcgggtcgc 117 |||||||||||| ||||||||||||| |||||||| ||||||| Sbjct: 1016 ggcttgccccagtacatgaggatgtcctggaggagggggtcgc 974
>gb|AY109519.1| Zea mays CL5798_1 mRNA sequence Length = 1022 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Plus Query: 75 ggcttgccccagaacatgaggatgtc 100 |||||||||||| ||||||||||||| Sbjct: 532 ggcttgccccagtacatgaggatgtc 557
>emb|AL669920.15| Mouse DNA sequence from clone RP23-263C23 on chromosome 11, complete sequence Length = 216776 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 141 ttgacgcccggggcgggggagg 162 |||||||||||||||||||||| Sbjct: 21446 ttgacgcccggggcgggggagg 21467
>gb|DQ178995.1| Streptomyces clavuligerus putative zinc-binding carboxypeptidase (zbcp) gene, partial cds; and glyceraldehyde-3-phosphate dehydrogenase (gap1) gene, complete cds Length = 1626 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 113 gtcgccggccggcagccccgc 133 ||||||||||||||||||||| Sbjct: 138 gtcgccggccggcagccccgc 158
>gb|AE012169.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 77 of 460 of the complete genome Length = 13011 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 agcgggtcgccggccggcagc 128 ||||||||||||||||||||| Sbjct: 12324 agcgggtcgccggccggcagc 12344
>gb|AC027131.6| Homo sapiens chromosome 16 clone RP11-317I8, complete sequence Length = 206102 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ccggccggcagccccgccgcc 137 ||||||||||||||||||||| Sbjct: 645 ccggccggcagccccgccgcc 665
>gb|AC026397.4| Homo sapiens chromosome 16 clone CTA-162C2, complete sequence Length = 124998 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ccggccggcagccccgccgcc 137 ||||||||||||||||||||| Sbjct: 45095 ccggccggcagccccgccgcc 45115
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 108 agcgggtcgccggccggcagc 128 ||||||||||||||||||||| Sbjct: 4184274 agcgggtcgccggccggcagc 4184254
>gb|AC044802.6| Homo sapiens chromosome 16 clone RP11-61A14, complete sequence Length = 170691 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ccggccggcagccccgccgcc 137 ||||||||||||||||||||| Sbjct: 70978 ccggccggcagccccgccgcc 70998
>gb|AC004638.1|HUAC004638 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-116A10, complete sequence Length = 124645 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ccggccggcagccccgccgcc 137 ||||||||||||||||||||| Sbjct: 45097 ccggccggcagccccgccgcc 45117
>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome Length = 3481691 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tgaggatgtcttggaggagc 110 |||||||||||||||||||| Sbjct: 361614 tgaggatgtcttggaggagc 361633
>gb|AC132832.13| Mus musculus chromosome 9, clone RP23-48D19, complete sequence Length = 230772 Score = 40.1 bits (20), Expect = 2.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 107 gagcgggtcgccggccggcagccccgcc 134 |||||||||||||||||| |||||||| Sbjct: 148477 gagcgggtcgccggccggtggccccgcc 148450
>ref|XM_983668.1| PREDICTED: Mus musculus similar to ribosomal protein L31 (LOC675618), mRNA Length = 1686 Score = 40.1 bits (20), Expect = 2.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 107 gagcgggtcgccggccggcagccccgcc 134 |||||||||||||||||| |||||||| Sbjct: 446 gagcgggtcgccggccggtggccccgcc 419
>gb|AY392418.1|AY392417S2 Streptomyces clavuligerus plasmid pSCL2 clone contig7.207-II, partial sequence Length = 15013 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 cgggtcgccggccggcagcc 129 |||||||||||||||||||| Sbjct: 12650 cgggtcgccggccggcagcc 12631
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 cgccggccggcagccccgcc 134 |||||||||||||||||||| Sbjct: 573247 cgccggccggcagccccgcc 573228
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcgccggccggcagccccgc 133 |||||||||||||||||||| Sbjct: 946392 tcgccggccggcagccccgc 946411
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 agcgggtcgccggccggcag 127 |||||||||||||||||||| Sbjct: 4091625 agcgggtcgccggccggcag 4091606
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 gcccaaaccacacgtacagc 48 |||||||||||||||||||| Sbjct: 403677 gcccaaaccacacgtacagc 403658
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 agcgggtcgccggccggcag 127 |||||||||||||||||||| Sbjct: 4096224 agcgggtcgccggccggcag 4096205
>gb|AC122048.2| Mus musculus BAC clone RP24-456G2 from 2, complete sequence Length = 153772 Score = 38.2 bits (19), Expect = 8.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 92 gaggatgtcttggaggagcgggtcgccggcc 122 ||||||| ||||||||||||| || |||||| Sbjct: 809 gaggatggcttggaggagcggatccccggcc 839
>ref|XM_947556.1| Theileria annulata strain Ankara glycylpeptide N-tetradecanoyltransferase 1 (TA13465) partial mRNA Length = 1377 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 68 tcaaaaaggcttgccccag 86 ||||||||||||||||||| Sbjct: 658 tcaaaaaggcttgccccag 676
>gb|AC084821.26| Mus musculus strain C57BL/6J clone rp23-395h6 map 1, complete sequence Length = 211776 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 115 cgccggccggcagccccgccgcc 137 ||||||||||| ||||||||||| Sbjct: 15975 cgccggccggccgccccgccgcc 15997
>emb|AL513487.3| Human DNA sequence from clone RP13-63I15 on chromosome Xq24-26.2, complete sequence Length = 144177 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 gcttgccccagaacatgag 94 ||||||||||||||||||| Sbjct: 99231 gcttgccccagaacatgag 99213
>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence Length = 250029 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 92 gaggatgtcttggaggagc 110 ||||||||||||||||||| Sbjct: 194333 gaggatgtcttggaggagc 194315
>gb|AF486825.1| Rhodovulum euryhalinum PufA (pufA) and PufL (pufL) genes, complete cds; and PufM (pufM) gene, partial cds Length = 1874 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 102 tggaggagcgggtcgccgg 120 ||||||||||||||||||| Sbjct: 1253 tggaggagcgggtcgccgg 1271
>emb|AL590147.7| Zebrafish DNA sequence from clone RP71-21D15 in linkage group 24 Contains part of a novel gene similar to human, rat and mouse CTNND2 (catenin delta 2, cadherin-associated protein delta 2, neural plakophilin-related arm-repeat protein) and a CpG island, complete sequence Length = 148485 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 87 aacatgaggatgtcttggaggag 109 |||||||| |||||||||||||| Sbjct: 57554 aacatgagaatgtcttggaggag 57532
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 118 cggccggcagccccgccgc 136 ||||||||||||||||||| Sbjct: 4162954 cggccggcagccccgccgc 4162936
>gb|AE006009.1| Caulobacter crescentus CB15 section 335 of 359 of the complete genome Length = 12052 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 112 ggtcgccggccggcagccccgcc 134 |||||||||||||||| |||||| Sbjct: 6007 ggtcgccggccggcagacccgcc 6029
>gb|AE011707.1| Xanthomonas axonopodis pv. citri str. 306, section 85 of 469 of the complete genome Length = 7783 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 110 cgggtcgccggccggcagc 128 ||||||||||||||||||| Sbjct: 3533 cgggtcgccggccggcagc 3551
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 119 ggccggcagccccgccgccgggt 141 |||||||||| |||||||||||| Sbjct: 2857748 ggccggcagcgccgccgccgggt 2857770
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 102 tggaggagcgggtcgccgg 120 ||||||||||||||||||| Sbjct: 5711763 tggaggagcgggtcgccgg 5711745 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 145 cgcccggggcgggggaggc 163 ||||||||||||||||||| Sbjct: 1279327 cgcccggggcgggggaggc 1279309
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 115 cgccggccggcagccccgc 133 ||||||||||||||||||| Sbjct: 1443636 cgccggccggcagccccgc 1443618
>gb|AE005022.1| Halobacterium sp. NRC-1 section 53 of 170 of the complete genome Length = 11515 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 115 cgccggccggcagccccgccgcc 137 |||| |||||||||||||||||| Sbjct: 9742 cgcccgccggcagccccgccgcc 9764
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 119 ggccggcagccccgccgcc 137 ||||||||||||||||||| Sbjct: 2397464 ggccggcagccccgccgcc 2397446
>emb|BX004824.9| Zebrafish DNA sequence from clone CH211-57I17 in linkage group 20, complete sequence Length = 148801 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 ggttgatttcctctctcag 24 ||||||||||||||||||| Sbjct: 68561 ggttgatttcctctctcag 68543
>emb|BX005067.6| Zebrafish DNA sequence from clone CH211-182K2 in linkage group 24, complete sequence Length = 162692 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 87 aacatgaggatgtcttggaggag 109 |||||||| |||||||||||||| Sbjct: 121538 aacatgagaatgtcttggaggag 121516
>emb|AL845373.12| Mouse DNA sequence from clone RP23-211L7 on chromosome 2, complete sequence Length = 228651 Score = 38.2 bits (19), Expect = 8.1 Identities = 28/31 (90%) Strand = Plus / Plus Query: 92 gaggatgtcttggaggagcgggtcgccggcc 122 ||||||| ||||||||||||| || |||||| Sbjct: 151991 gaggatggcttggaggagcggatccccggcc 152021
>emb|AL837516.14| Mouse DNA sequence from clone RP23-234L8 on chromosome 2, complete sequence Length = 202046 Score = 38.2 bits (19), Expect = 8.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 80 gccccagaacatgaggatg 98 ||||||||||||||||||| Sbjct: 65086 gccccagaacatgaggatg 65068
>gb|AC087229.27| Mus musculus strain C57BL/6J chromosome 1 clone rp23-191a19, complete sequence Length = 215043 Score = 38.2 bits (19), Expect = 8.1 Identities = 22/23 (95%) Strand = Plus / Minus Query: 115 cgccggccggcagccccgccgcc 137 ||||||||||| ||||||||||| Sbjct: 74925 cgccggccggccgccccgccgcc 74903 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,185,727 Number of Sequences: 3902068 Number of extensions: 1185727 Number of successful extensions: 88272 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86982 Number of HSP's gapped (non-prelim): 1290 length of query: 167 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 145 effective length of database: 17,147,199,772 effective search space: 2486343966940 effective search space used: 2486343966940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
