ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45e09 |
|---|---|
| Clone Library Name | barley_pub |
>GPMB_SALTY (Q8ZJU8) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 43.1 bits (100), Expect = 3e-04 Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 11/99 (11%) Frame = -3 Query: 411 GGESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHASPMPL----RGKIHNT 244 GGES+ +LS+R + L +E +G R +LVSHG + L +P R ++ N Sbjct: 118 GGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNC 177 Query: 243 SVTVV-------LVSGDTGRCIVKMCGDVSHLEATGVLE 148 S++ + L SG +V+ GDVSHL+A + E Sbjct: 178 SISRIDYQESQWLASG----WVVETAGDVSHLDAPALDE 212
>GPMB_SALTI (Q8Z0T4) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 41.6 bits (96), Expect = 0.001 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 11/99 (11%) Frame = -3 Query: 411 GGESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHASPMPL----RGKIHNT 244 GGES+ +LS+R + L +E +G R +LVSHG + L +P R ++ N Sbjct: 118 GGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNC 177 Query: 243 SVTVV-------LVSGDTGRCIVKMCGDVSHLEATGVLE 148 S++ + L SG +V+ GDVSHL+ + E Sbjct: 178 SISRIDYQESQWLASG----WVVETAGDVSHLDTPALDE 212
>GPMA_RHIEC (Q8KL44) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 209 Score = 38.5 bits (88), Expect = 0.008 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Frame = -3 Query: 417 PGGGESLDQLSERCVSCLYKIVEEH--RGERVILVSHGGTIRELYRHASPMPLRGKIHNT 244 P GGES+ +S R + L V RG+ V++V+HG TIR L + + ++ Sbjct: 121 PPGGESIRDISARVLPFLISEVFPPLLRGKSVLVVAHGNTIRSLKQGIERLTIQD----- 175 Query: 243 SVTVVLVSGDTGRCIVKMCGDVSHLEATGVL 151 T+ + S + ++ D+S +E T VL Sbjct: 176 --TLAIESPTAAPTVYRIASDLSIIEKTNVL 204
>GPMB_SHIFL (P0A7A4) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 38.1 bits (87), Expect = 0.010 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%) Frame = -3 Query: 408 GESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHASPMPL----RGKIHNTS 241 GES+ +LS+R + L + +G R +LVSHG + L +P R ++ N S Sbjct: 119 GESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCS 178 Query: 240 VTVV-------LVSGDTGRCIVKMCGDVSHLEATGVLE 148 ++ V L SG +V+ GD+SHL+A + E Sbjct: 179 ISRVDYQESLWLASG----WVVETAGDISHLDAPALDE 212
>GPMB_ECOLI (P0A7A2) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 38.1 bits (87), Expect = 0.010 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%) Frame = -3 Query: 408 GESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHASPMPL----RGKIHNTS 241 GES+ +LS+R + L + +G R +LVSHG + L +P R ++ N S Sbjct: 119 GESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCS 178 Query: 240 VTVV-------LVSGDTGRCIVKMCGDVSHLEATGVLE 148 ++ V L SG +V+ GD+SHL+A + E Sbjct: 179 ISRVDYQESLWLASG----WVVETAGDISHLDAPALDE 212
>GPMB_ECOL6 (Q8FA40) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 38.1 bits (87), Expect = 0.010 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%) Frame = -3 Query: 408 GESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHASPMPL----RGKIHNTS 241 GES+ +LS+R + L + +G R +LVSHG + L +P R ++ N S Sbjct: 119 GESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCS 178 Query: 240 VTVV-------LVSGDTGRCIVKMCGDVSHLEATGVLE 148 ++ V L SG +V+ GD+SHL+A + E Sbjct: 179 ISRVDYQESLWLASG----WVVETAGDISHLDAPALDE 212
>GPMB_ECO57 (P0A7A3) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 38.1 bits (87), Expect = 0.010 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 11/98 (11%) Frame = -3 Query: 408 GESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHASPMPL----RGKIHNTS 241 GES+ +LS+R + L + +G R +LVSHG + L +P R ++ N S Sbjct: 119 GESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVSTILGLPAWAERRLRLRNCS 178 Query: 240 VTVV-------LVSGDTGRCIVKMCGDVSHLEATGVLE 148 ++ V L SG +V+ GD+SHL+A + E Sbjct: 179 ISRVDYQESLWLASG----WVVETAGDISHLDAPALDE 212
>GPMB_PHOLL (Q7N900) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 37.4 bits (85), Expect = 0.017 Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 18/108 (16%) Frame = -3 Query: 417 PGG----GESLDQLSERCVSCLYKIVEEHRGERVILVSHG-------GTIRELYRHASPM 271 PGG GES+D+L+ R + L G R +LVSHG GTI L HA Sbjct: 112 PGGRIPKGESMDELAVRMRAALENCRNLPVGSRPLLVSHGIALGCLVGTILGLPAHAE-- 169 Query: 270 PLRGKIHNTSVTVV-------LVSGDTGRCIVKMCGDVSHLEATGVLE 148 R ++ N S++ V L SG IV+ GD++HL+ + E Sbjct: 170 -RRLRLRNCSLSRVDYQHSPWLASG----WIVETAGDITHLDTPALDE 212
>GPMA2_GLOVI (Q7NJF7) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (PGAM 2) (BPG-dependent PGAM 2) (dPGM 2) Length = 219 Score = 32.0 bits (71), Expect = 0.71 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = -3 Query: 417 PGGGESLDQLSERCVSCLY-KIVEE-HRGERVILVSHGGTIRELYR---HASP 274 P GGESL + R + Y KIV E G+ V++ +HG TIR + H SP Sbjct: 119 PPGGESLKDTALRSLRYFYEKIVPELEAGKNVLVSAHGNTIRAILMELDHLSP 171
>PMGY_SCHPO (P36623) Phosphoglycerate mutase (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) (MPGM) (BPG-dependent PGAM) Length = 211 Score = 31.6 bits (70), Expect = 0.93 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%) Frame = -3 Query: 417 PGGGESLDQLSERCVSCLYKIVEEH--RGERVILVSHGGTIREL 292 P GESL +ER + + H +GE+V++ +HG ++R L Sbjct: 127 PPNGESLKDTAERVLPYYKSTIVPHILKGEKVLIAAHGNSLRAL 170
>CTXN1_HUMAN (P60606) Cortexin-1| Length = 82 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/50 (36%), Positives = 22/50 (44%) Frame = -1 Query: 326 SWYLMEEPSESSTGTPVPCRFAAKYTTRRLLSCSFLVTLAAALSRCVEML 177 +W L EP STG PV A+ T LV L + RCV +L Sbjct: 4 TWTLSPEPLPPSTGPPVGAGLDAEQRTVFAFVLCLLVVLVLLMVRCVRIL 53
>GPMB_YERPE (Q8ZIP0) Probable phosphoglycerate mutase gpmB (EC 5.4.2.1)| (Phosphoglyceromutase) (PGAM) Length = 215 Score = 30.8 bits (68), Expect = 1.6 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 14/95 (14%) Frame = -3 Query: 408 GESLDQLSERCVSCLYKIVEEHRGERVILVSHG-------GTIRELYRHASPMPLRGKIH 250 GES+ +L R + L +E G + +LVSHG T+ L HA R ++ Sbjct: 119 GESMTELGRRMHAALDSCLELPAGSKPLLVSHGMALGCLLSTLLGLPAHAE---RRLRLR 175 Query: 249 NTSVTVV-------LVSGDTGRCIVKMCGDVSHLE 166 N S++ V L SG +++ GD +HL+ Sbjct: 176 NCSLSRVDYQESPWLASG----WVIESAGDTAHLD 206
>GPMA_NITOC (Q3JBA8) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM) (BPG-dependent PGAM) (dPGM) Length = 240 Score = 30.4 bits (67), Expect = 2.1 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 2/43 (4%) Frame = -3 Query: 405 ESLDQLSERCVSCLYKIV--EEHRGERVILVSHGGTIRELYRH 283 ESL + +R + C + + + G+ +I+V+HG ++R LY+H Sbjct: 147 ESLKKTLKRVIPCWKQHILPDIAAGKELIIVAHGNSLRALYKH 189
>DLX6_MOUSE (P70397) Homeobox protein DLX-6 (Fragment)| Length = 158 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +2 Query: 134 PPNAFSRTPVASRWLTSPHILTMQRP 211 PPN++ P S W +SPH TMQRP Sbjct: 132 PPNSYM--PGYSHWYSSPHQDTMQRP 155
>DLX6_HUMAN (P56179) Homeobox protein DLX-6| Length = 175 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +2 Query: 134 PPNAFSRTPVASRWLTSPHILTMQRP 211 PPN++ P S W +SPH TMQRP Sbjct: 149 PPNSYM--PGYSHWYSSPHQDTMQRP 172
>DBP10_KLULA (Q6CIR0) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)| Length = 973 Score = 30.0 bits (66), Expect = 2.7 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = -1 Query: 311 EEPSESSTGTPVPCRFAAKYTTRRLLSCSFLVT-LAAALSRCVEMLATLRPPVFWRMRLG 135 E PSE +T VP R +Y T+ L +C +LV+ + AL++ R + R G Sbjct: 414 EMPSEKATIVFVPTRHHVEYVTQLLKNCGYLVSYIYGALNQ------HARKQQLYNFRAG 467 Query: 134 ATSL 123 TS+ Sbjct: 468 LTSI 471
>CTXN1_MOUSE (Q8K129) Cortexin-1| Length = 82 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/50 (34%), Positives = 21/50 (42%) Frame = -1 Query: 326 SWYLMEEPSESSTGTPVPCRFAAKYTTRRLLSCSFLVTLAAALSRCVEML 177 +W L EP STG PV + T LV L + RCV +L Sbjct: 4 AWTLSPEPLPPSTGPPVGAGLDVEQRTVFAFVLCLLVVLVLLMVRCVRIL 53
>CTXN1_RAT (P41237) Cortexin-1| Length = 82 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/49 (34%), Positives = 20/49 (40%) Frame = -1 Query: 323 WYLMEEPSESSTGTPVPCRFAAKYTTRRLLSCSFLVTLAAALSRCVEML 177 W L EP STG PV + T LV L + RCV +L Sbjct: 5 WTLSPEPLPPSTGPPVGAGLDVEQRTVFAFVLCLLVVLVLLMVRCVRIL 53
>Y2253_MYCBO (P64956) Hypothetical protein Mb2253c| Length = 364 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 417 PGGGESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHA 280 P GGES D + R +I+ + G V++VSH I+ L R A Sbjct: 279 PPGGESFDDVLRRVRRGRDRIIVGYEGATVLVVSHVTPIKMLLRLA 324
>Y2228_MYCTU (P64955) Hypothetical protein Rv2228c/MT2287| Length = 364 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/46 (36%), Positives = 24/46 (52%) Frame = -3 Query: 417 PGGGESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRELYRHA 280 P GGES D + R +I+ + G V++VSH I+ L R A Sbjct: 279 PPGGESFDDVLRRVRRGRDRIIVGYEGATVLVVSHVTPIKMLLRLA 324
>KRA45_HUMAN (Q9BYR2) Keratin-associated protein 4-5 (Keratin-associated protein| 4.5) (Ultrahigh sulfur keratin-associated protein 4.5) Length = 186 Score = 29.3 bits (64), Expect = 4.6 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 2/71 (2%) Frame = +3 Query: 87 CKNCCRWGALRLKTCRPQTHSPEHRWPQGG*HLHTS*QCSGQCHQKRARQ*PTCCV--FC 260 C +CC+ R CRP P+ C C+Q P+CC+ C Sbjct: 22 CPSCCQTTCCRTTCCRPSCCKPQ--------------CCQSVCYQPTCCH-PSCCISSCC 66 Query: 261 REAAWDWRACR 293 R + CR Sbjct: 67 RPYCCESSCCR 77
>FABG_PSEAE (O54438) 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100)| (3-ketoacyl-acyl carrier protein reductase) Length = 247 Score = 28.9 bits (63), Expect = 6.0 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = -3 Query: 420 IPGGGESLDQLSERCVSCLYKIVEEHRGERVILVSHGGTIRE 295 + G G LD S+ V+ + +++H G+ +I+V++ G R+ Sbjct: 54 VEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGITRD 95
>PRP8_YEAST (P33334) Pre-mRNA-splicing factor 8| Length = 2413 Score = 28.9 bits (63), Expect = 6.0 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%) Frame = -1 Query: 293 STGTPVPCRFAAKYTTRRLLSCSFLVTLAAALSRCVEMLATLRPPVFWRMRLGATSLQPK 114 ++G+ + AAK+ T + ++ A +++L + R++LG S P Sbjct: 1322 ASGSTTFTKVAAKWNTSLISLFTYFREAIVATEPLLDILVKGETRIQNRVKLGLNSKMPT 1381 Query: 113 STPPAAVLTCR---GYGLPSCRHV 51 PPA T + G G+ S H+ Sbjct: 1382 RFPPAVFYTPKELGGLGMISASHI 1405
>ARLY_PYRFU (Q8U483) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 459 Score = 28.9 bits (63), Expect = 6.0 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%) Frame = -1 Query: 266 FAAKYTTRRLLSCSFLVTLAAALSRCVEMLATLRPPVFWRMR-----LGATSLQPKSTPP 102 +A T L SC V ++ ALSR E P F ++ L +S+ P+ P Sbjct: 220 YATSSRTFLLYSCFLSVLISIALSRIAEDFVIFSTPNFGYIKLPNEHLSTSSMMPQKKNP 279 Query: 101 AAVLTCRGYGLPSCRHVFAV 42 + R + + H+ A+ Sbjct: 280 VTMEVARAWAGEAIGHLVAM 299
>GPMA2_BACC1 (Q732Z5) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (PGAM 2) (BPG-dependent PGAM 2) (dPGM 2) Length = 240 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = -3 Query: 405 ESLDQLSERCVSCLYKIVEEH--RGERVILVSHGGTIRELYRH 283 E L+ +R VS + + + G++VI+ +HG TIR L +H Sbjct: 150 EDLEDTEKRVVSYWNEEIAPNVKAGKQVIIAAHGNTIRALVKH 192
>GPMA1_BACC1 (Q737X5) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase| 1 (EC 5.4.2.1) (Phosphoglyceromutase 1) (PGAM 1) (BPG-dependent PGAM 1) (dPGM 1) Length = 245 Score = 28.5 bits (62), Expect = 7.9 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%) Frame = -3 Query: 339 GERVILVSHGGTIRELYRHASPMPLRGKIH-NTSVTVVLV 223 GE+VI+ SHG TIR L ++ + G + N ++ LV Sbjct: 174 GEKVIISSHGNTIRSLVKYLDNLSSDGVVSLNIPTSIPLV 213
>ACBD6_XENTR (Q66JD7) Acyl-CoA-binding domain-containing protein 6| Length = 286 Score = 28.5 bits (62), Expect = 7.9 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%) Frame = -3 Query: 375 VSCLYKIVEEHRGERVILVSHGGTIRELYRHASPMPLRGKIH--NTSVTVVLVSGDTGRC 202 VSCLYK+ E R E ++++ + + H +T V V+ D GRC Sbjct: 136 VSCLYKVQETLREED----------KDIFDYCRENNISRVSHALSTGAIDVNVADDEGRC 185 Query: 201 IVKMCGDVSHLEATGVL 151 ++ D H + VL Sbjct: 186 LLHWACDRGHTQLVSVL 202
>CP51A_BOVIN (Q4PJW3) Cytochrome P450 51A1 (EC 1.14.13.70) (CYPLI) (P450LI)| (Sterol 14-alpha demethylase) (Lanosterol 14-alpha demethylase) (LDM) (P450-14DM) (P45014DM) Length = 502 Score = 28.5 bits (62), Expect = 7.9 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -1 Query: 200 LSRCVEMLATLRPPVFWRMRLGATSLQPKSTPPAAVLTCRGYGLP 66 L RC++ LRPP+ MRL T LT GY +P Sbjct: 362 LDRCIKETLRLRPPIMTMMRLAKTP-----------LTVAGYTIP 395 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,497,282 Number of Sequences: 219361 Number of extensions: 1583953 Number of successful extensions: 4597 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 4459 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4590 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
