Clone Name | rbart45e09 |
---|---|
Clone Library Name | barley_pub |
>gb|AY108290.1| Zea mays PCO078770 mRNA sequence Length = 779 Score = 170 bits (86), Expect = 2e-39 Identities = 232/280 (82%), Gaps = 3/280 (1%) Strand = Plus / Minus Query: 170 aggtggctaacatctccacacatcttgacaatgcagcggccagtgtcaccagaaacgagc 229 |||||||| || || || ||||||||||| ||||| ||||| ||| | | || ||||| Sbjct: 418 aggtggctgacgtccccgcacatcttgacgatgcaccggccggtggcgtcggacacgagg 359 Query: 230 acgacagtaaccgacgtgttgtgtattttgccgcgaagcggcat---gggactggcgtgc 286 | ||| | |||||||||||||||||||||||| | |||||| | |||||| ||||| Sbjct: 358 atgacgctcaccgacgtgttgtgtattttgccgtggagcggcttcgtgggactcgcgtgt 299 Query: 287 ctgtagagctctctgatggttcctccatgagataccaggataactcgctcccctctatgt 346 |||||||||||||||||||| || ||||| || ||||||||||||||||||||| | ||| Sbjct: 298 ctgtagagctctctgatggtgccgccatgtgaaaccaggataactcgctcccctttgtgt 239 Query: 347 tcctcgactattttatacaggcatgagacacatcgctctgacagttgatcaaggctctct 406 | | || || | ||||| | || ||||||||||| |||||||||||||| |||||| Sbjct: 238 ttacccacaatgtcgtacagaaaagacacacatcgctccgacagttgatcaagactctct 179 Query: 407 ccaccaccaggaatttgctggtttctcttgtgggacataa 446 ||||||||||||| ||| || ||||||||||||||||||| Sbjct: 178 ccaccaccaggaacttgttgatttctcttgtgggacataa 139
>ref|XM_482937.1| Oryza sativa (japonica cultivar-group), mRNA Length = 915 Score = 163 bits (82), Expect = 6e-37 Identities = 258/316 (81%), Gaps = 3/316 (0%) Strand = Plus / Minus Query: 131 tcgcccccaaacgcattctccagaacaccggtggcctcaaggtggctaacatctccacac 190 ||||| ||||| || || |||||||||||||| ||| ||||||||| | || || ||| Sbjct: 899 tcgccaccaaaggcgttttccagaacaccggtttccttaaggtggctgatgtccccgcac 840 Query: 191 atcttgacaatgcagcggccagtgtcaccagaaacgagcacgacagtaaccgacgtgttg 250 |||||||||||| || |||||| ||||||| || || | || | || || |||||| Sbjct: 839 gccttgacaatgcaacgcccagtggcaccagacacaaggattacgcttacggatgtgttg 780 Query: 251 tgtattttgccgcgaagcggc---atgggactggcgtgcctgtagagctctctgatggtt 307 ||||| || ||| |||| ||| || |||||||| ||||||||||| |||||||||||| Sbjct: 779 tgtatcttaccgtgaagaggcttcattggactggcatgcctgtagagttctctgatggtt 720 Query: 308 cctccatgagataccaggataactcgctcccctctatgttcctcgactattttatacagg 367 || || || || |||| ||| | |||||||||| ||||| ||||||||| || |||| | Sbjct: 719 ccaccgtgcgagaccaagattattcgctccccttgatgtttctcgactatgttgtacaag 660 Query: 368 catgagacacatcgctctgacagttgatcaaggctctctccaccaccaggaatttgctgg 427 || ||||||||||||||||| ||||||||||| || |||||||||||||||||||| || Sbjct: 659 caagagacacatcgctctgatagttgatcaagactttctccaccaccaggaatttgtcgg 600 Query: 428 tttctcttgtgggaca 443 || |||||||| |||| Sbjct: 599 ttcctcttgtgcgaca 584
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 79.8 bits (40), Expect = 7e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 343 atgttcctcgactattttatacaggcatgagacacatcgctctgacagttgatcaaggct 402 ||||| ||||||||| || |||| ||| ||||||||||||||||| ||||||||||| || Sbjct: 23462344 atgtttctcgactatgttgtacaagcaagagacacatcgctctgatagttgatcaagact 23462403 Query: 403 ctctccaccacc 414 ||||||||||| Sbjct: 23462404 ttctccaccacc 23462415 Score = 69.9 bits (35), Expect = 7e-09 Identities = 169/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Plus Query: 131 tcgcccccaaacgcattctccagaacaccggtggcctcaaggtggctaacatctccacac 190 ||||| ||||| || || |||||||||||||| ||| ||||||||| | || || ||| Sbjct: 23461814 tcgccaccaaaggcgttttccagaacaccggtttccttaaggtggctgatgtccccgcac 23461873 Query: 191 atcttgacaatgcagcggccagtgtcaccagaaacgagcacgacagtaaccgacgtgttg 250 |||||||||||| || |||||| ||||||| || || | || | || || |||||| Sbjct: 23461874 gccttgacaatgcaacgcccagtggcaccagacacaaggattacgcttacggatgtgttg 23461933 Query: 251 tgtattttgccgcgaagcggc---atgggactggcgtgcctgtagagctctctgatggtt 307 ||||| || ||| |||| ||| || |||||||| ||||||||||| |||||||||||| Sbjct: 23461934 tgtatcttaccgtgaagaggcttcattggactggcatgcctgtagagttctctgatggtt 23461993 Query: 308 cctccatgagataccaggataactcgctcccct 340 || || || || |||| ||| | |||||||||| Sbjct: 23461994 ccaccgtgcgagaccaagattattcgctcccct 23462026
>dbj|AP004154.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1111_E05 Length = 126978 Score = 79.8 bits (40), Expect = 7e-12 Identities = 64/72 (88%) Strand = Plus / Plus Query: 343 atgttcctcgactattttatacaggcatgagacacatcgctctgacagttgatcaaggct 402 ||||| ||||||||| || |||| ||| ||||||||||||||||| ||||||||||| || Sbjct: 53759 atgtttctcgactatgttgtacaagcaagagacacatcgctctgatagttgatcaagact 53818 Query: 403 ctctccaccacc 414 ||||||||||| Sbjct: 53819 ttctccaccacc 53830 Score = 69.9 bits (35), Expect = 7e-09 Identities = 169/213 (79%), Gaps = 3/213 (1%) Strand = Plus / Plus Query: 131 tcgcccccaaacgcattctccagaacaccggtggcctcaaggtggctaacatctccacac 190 ||||| ||||| || || |||||||||||||| ||| ||||||||| | || || ||| Sbjct: 53229 tcgccaccaaaggcgttttccagaacaccggtttccttaaggtggctgatgtccccgcac 53288 Query: 191 atcttgacaatgcagcggccagtgtcaccagaaacgagcacgacagtaaccgacgtgttg 250 |||||||||||| || |||||| ||||||| || || | || | || || |||||| Sbjct: 53289 gccttgacaatgcaacgcccagtggcaccagacacaaggattacgcttacggatgtgttg 53348 Query: 251 tgtattttgccgcgaagcggc---atgggactggcgtgcctgtagagctctctgatggtt 307 ||||| || ||| |||| ||| || |||||||| ||||||||||| |||||||||||| Sbjct: 53349 tgtatcttaccgtgaagaggcttcattggactggcatgcctgtagagttctctgatggtt 53408 Query: 308 cctccatgagataccaggataactcgctcccct 340 || || || || |||| ||| | |||||||||| Sbjct: 53409 ccaccgtgcgagaccaagattattcgctcccct 53441
>ref|XM_606837.2| PREDICTED: Bos taurus similar to OG2 homeobox (LOC528414), mRNA Length = 2505 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 ctgctgcaggtggggtgctct 115 ||||||||||||||||||||| Sbjct: 2404 ctgctgcaggtggggtgctct 2384
>emb|AL122015.17|HSDJ8L15 Human DNA sequence from clone RP1-8L15 on chromosome 11p13, complete sequence Length = 111590 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 362 tacaggcatgagacacatcgc 382 ||||||||||||||||||||| Sbjct: 24733 tacaggcatgagacacatcgc 24753
>gb|BC107341.1| Mus musculus developmental pluripotency-associated 3, mRNA (cDNA clone MGC:130309 IMAGE:40055220), complete cds Length = 636 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 50 tctctgatggttcctccatg 31
>gb|BC107340.1| Mus musculus developmental pluripotency-associated 3, mRNA (cDNA clone MGC:130308 IMAGE:40055218), complete cds Length = 636 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 50 tctctgatggttcctccatg 31
>ref|XM_878101.1| PREDICTED: Bos taurus CTSZ protein, transcript variant 2 (CTSZ), mRNA Length = 1075 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 gccagtgtcaccagaaacgagcac 231 |||||||||||||||||| ||||| Sbjct: 321 gccagtgtcaccagaaaccagcac 344
>ref|XM_592880.2| PREDICTED: Bos taurus CTSZ protein, transcript variant 1 (CTSZ), mRNA Length = 1441 Score = 40.1 bits (20), Expect = 6.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 208 gccagtgtcaccagaaacgagcac 231 |||||||||||||||||| ||||| Sbjct: 321 gccagtgtcaccagaaaccagcac 344
>ref|NM_139218.1| Mus musculus developmental pluripotency-associated 3 (Dppa3), mRNA Length = 818 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 118 tctctgatggttcctccatg 99
>ref|XM_001006400.1| PREDICTED: Mus musculus similar to developmental pluripotency-associated 3 (LOC673824), mRNA Length = 825 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 121 tctctgatggttcctccatg 102
>ref|XM_885629.2| PREDICTED: Mus musculus similar to developmental pluripotency-associated 3 (LOC621903), mRNA Length = 824 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 120 tctctgatggttcctccatg 101
>ref|XM_909724.2| PREDICTED: Mus musculus similar to developmental pluripotency-associated 3 (LOC634364), mRNA Length = 824 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 120 tctctgatggttcctccatg 101
>gb|AC131715.3| Mus musculus BAC clone RP23-180N22 from chromosome 6, complete sequence Length = 180102 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 125173 tctctgatggttcctccatg 125192
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gtcaccagaaacgagcacga 233 |||||||||||||||||||| Sbjct: 104830 gtcaccagaaacgagcacga 104849
>gb|AC037471.12| Homo sapiens chromosome 15, clone RP11-810K23, complete sequence Length = 217553 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ttttatacaggcatgagaca 376 |||||||||||||||||||| Sbjct: 200124 ttttatacaggcatgagaca 200105
>gb|AC127381.4| Homo sapiens BAC clone RP11-1360M22 from UL, complete sequence Length = 241627 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ttttatacaggcatgagaca 376 |||||||||||||||||||| Sbjct: 25695 ttttatacaggcatgagaca 25714
>gb|AC087386.7| Homo sapiens chromosome 15, clone RP11-173D3, complete sequence Length = 155343 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ttttatacaggcatgagaca 376 |||||||||||||||||||| Sbjct: 43462 ttttatacaggcatgagaca 43443
>gb|AY134859.1| Mus musculus compaction-associated protein 1 (Crg1) mRNA, complete cds Length = 808 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 130 tctctgatggttcctccatg 111
>gb|BC100331.1| Mus musculus developmental pluripotency-associated 3, mRNA (cDNA clone MGC:117618 IMAGE:30934920), complete cds Length = 913 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 93 tctctgatggttcctccatg 74
>gb|AC021585.7| Homo sapiens chromosome , clone RP11-96F3, complete sequence Length = 187670 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ttttatacaggcatgagaca 376 |||||||||||||||||||| Sbjct: 21985 ttttatacaggcatgagaca 22004
>gb|BC099433.1| Mus musculus developmental pluripotency-associated 3, mRNA (cDNA clone MGC:117617 IMAGE:30933569), complete cds Length = 849 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 96 tctctgatggttcctccatg 77
>gb|AY082485.1| Mus musculus stella mRNA, complete cds Length = 818 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 118 tctctgatggttcctccatg 99
>emb|CR594233.1| full-length cDNA clone CS0DI067YI21 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 956 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gcaggtggggtgctcttagg 119 |||||||||||||||||||| Sbjct: 269 gcaggtggggtgctcttagg 288
>gb|AF334830.1| Homo sapiens cartilage-hair hypoplasia region gene sequence Length = 138754 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gcaggtggggtgctcttagg 119 |||||||||||||||||||| Sbjct: 21843 gcaggtggggtgctcttagg 21824
>gb|AF490476.1| Homo sapiens histidine triad nucleotide binding protein 2 (HINT2) gene, complete cds Length = 3778 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gcaggtggggtgctcttagg 119 |||||||||||||||||||| Sbjct: 2294 gcaggtggggtgctcttagg 2313
>dbj|AK136263.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420498L12 product:developmental pluripotency-associated 3, full insert sequence Length = 795 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 123 tctctgatggttcctccatg 104
>dbj|AK135769.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length enriched library, clone:7420413P20 product:developmental pluripotency-associated 3, full insert sequence Length = 776 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 123 tctctgatggttcctccatg 104
>gb|AC126335.16| Homo sapiens chromosome 15, clone RP11-854K16, complete sequence Length = 178738 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ttttatacaggcatgagaca 376 |||||||||||||||||||| Sbjct: 32005 ttttatacaggcatgagaca 31986
>gb|AF490347.1| Mus musculus DPPA3 mRNA, complete cds Length = 823 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 123 tctctgatggttcctccatg 104
>gb|AC158651.12| Mus musculus BAC RP24-68I7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 190089 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 135249 tctctgatggttcctccatg 135230
>gb|BC033538.1| Homo sapiens, clone IMAGE:5163796, mRNA Length = 2171 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gcaggtggggtgctcttagg 119 |||||||||||||||||||| Sbjct: 1706 gcaggtggggtgctcttagg 1725
>gb|AC127533.9| Homo sapiens chromosome 15, clone RP11-1363O20, complete sequence Length = 165791 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ttttatacaggcatgagaca 376 |||||||||||||||||||| Sbjct: 36425 ttttatacaggcatgagaca 36444
>gb|AC134676.5| Homo sapiens chromosome 15, clone CTD-2290E14, complete sequence Length = 93881 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ttttatacaggcatgagaca 376 |||||||||||||||||||| Sbjct: 90041 ttttatacaggcatgagaca 90060
>emb|AL133410.32| Human DNA sequence from clone RP11-112J3 on chromosome 9p13.1-13.3 Contains the 3' end of the CA9 gene for carbonic anhydrase IX (MN), the TPM2 gene for tropomyosin 2 (beta) (DA1, TMSB, AMCD1), the TLN1 gene for talin 1 (TLN, KIAA1027), the CREB3 gene for cAMP responsive element binding protein 3 (luman) (LZIP, LUMAN, MGC15333, MGC19782), the GBA2 gene for glucosidase, beta (bile acid) 2 (AD035, KIAA1605, MGC16895, DKFZp762K054), a novel gene (KIAA0258), five novel genes, the NPR2 gene for natriuretic peptide receptor B/guanylate cyclase B (atrionatriuretic peptide receptor B) (NPRB, ANPRB, GUC2B, NPRBi), the SPAG8 gene for sperm associated antigen 8 (SMP1, BS-84, HSD-1, hSMP-1, MGC26201), the HINT2 gene for Histidine triad nucleotide binding protein 2, the gene for NAG-5 protein (LOC51754), an olfactory receptor pseudogene, the gene for a novel seven transmembrane helix receptor, a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5,13kDa (B13, NUFM, UQOR13, FLJ12147, CI-13KD-B) (NDUFA5) pseudogene and six CpG islands, complete sequence Length = 195379 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gcaggtggggtgctcttagg 119 |||||||||||||||||||| Sbjct: 133528 gcaggtggggtgctcttagg 133509
>emb|AL808133.17| Mouse DNA sequence from clone RP23-457N24 on chromosome X, complete sequence Length = 170192 Score = 40.1 bits (20), Expect = 6.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tctctgatggttcctccatg 315 |||||||||||||||||||| Sbjct: 105879 tctctgatggttcctccatg 105898 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,530,550 Number of Sequences: 3902068 Number of extensions: 3530550 Number of successful extensions: 61486 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61416 Number of HSP's gapped (non-prelim): 66 length of query: 446 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 424 effective length of database: 17,147,199,772 effective search space: 7270412703328 effective search space used: 7270412703328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)