ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ERI1_ASHGO (Q75D30) Phosphatidylinositol N-acetylglucosaminyltra... 32 0.52
2UTP20_MOUSE (Q5XG71) Small subunit processome component 20 homol... 32 0.52
3UTP20_HUMAN (O75691) Small subunit processome component 20 homol... 30 2.0
46PGL_RHILO (Q989A3) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) 28 7.6

>ERI1_ASHGO (Q75D30) Phosphatidylinositol N-acetylglucosaminyltransferase ERI1|
           subunit (Endoplasmic reticulum-associated Ras inhibitor
           protein 1)
          Length = 71

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = -1

Query: 195 RVSSRIVTQFQESASDALFFATSYLEHQETTLFVWCF*NFREIKQWCWLV 46
           +V++ +V     S   A  +  +Y  H ET L+ WC      +  W W V
Sbjct: 4   KVAATLVLVVTYSIVGASLWCLTYAWHDETKLYYWCIVQLLPVMLWVWCV 53



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>UTP20_MOUSE (Q5XG71) Small subunit processome component 20 homolog|
           (Down-regulated in metastasis protein)
          Length = 2788

 Score = 32.3 bits (72), Expect = 0.52
 Identities = 17/64 (26%), Positives = 29/64 (45%)
 Frame = -1

Query: 201 VCRVSSRIVTQFQESASDALFFATSYLEHQETTLFVWCF*NFREIKQWCWLVGTKYVGSA 22
           V +++  + T F     D     TS LE Q+T L  W F +   + ++ W +  K +   
Sbjct: 111 VVQLARDLQTDFYPHFEDFFLTITSILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSKI 170

Query: 21  YSRF 10
           YS +
Sbjct: 171 YSLY 174



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>UTP20_HUMAN (O75691) Small subunit processome component 20 homolog|
           (Down-regulated in metastasis protein) (Protein Key-1A6)
           (Novel nucleolar protein 73) (NNP73)
          Length = 2785

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 132 TSYLEHQETTLFVWCF*NFREIKQWCWLVGTKYVGSAYSRF 10
           TS LE Q+T L  W F +   + ++ W +  K + S YS +
Sbjct: 134 TSILETQDTELLEWAFTSLSYLYKYLWRLMVKDMSSIYSMY 174



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>6PGL_RHILO (Q989A3) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL)|
          Length = 238

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 413 PVDIVVFRVGTPGHDRLLFPDLD 345
           P+D+VV  +G  GH    FPD D
Sbjct: 134 PLDVVVLGMGPDGHTASFFPDAD 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,883,646
Number of Sequences: 219361
Number of extensions: 1316057
Number of successful extensions: 2671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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