ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45e01 |
|---|---|
| Clone Library Name | barley_pub |
>EF2_PICPA (Q874B9) Elongation factor 2 (EF-2)| Length = 842 Score = 32.3 bits (72), Expect = 0.45 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 290 VSRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 +S G + G G+ LEI L D D+HAGV +++PP Sbjct: 522 ISESGEHIVAGTGELHLEICLQDLQDDHAGVPLKISPP 559
>TRPB2_AERPE (Q9Y9H2) Tryptophan synthase beta chain 2 (EC 4.2.1.20)| Length = 449 Score = 31.6 bits (70), Expect = 0.78 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = +2 Query: 167 EMVKCVTKRTKWGEKMLTRRRNTHPSHPGKKGSIASWEVEEVSRHGGEFLGGLGQRLEIA 346 E+ + +T++G K+L +P+HPG G S +E+V GG LG L Sbjct: 184 EVYPSPSDKTEFGRKLLAE----NPNHPGSLGIAISEAIEDVINSGGNAKYSLGSVLNHV 239 Query: 347 L 349 L Sbjct: 240 L 240
>EF2_CANGA (Q6FYA7) Elongation factor 2 (EF-2)| Length = 842 Score = 31.2 bits (69), Expect = 1.0 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +2 Query: 287 EVSRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 ++S G + G G+ LEI L D +EHAG+ +++PP Sbjct: 521 QMSESGEHIVAGTGELHLEICLQDLENEHAGIPLKISPP 559
>BPA1_MOUSE (Q91ZU6) Bullous pemphigoid antigen 1, isoforms 1/2/3/4 (BPA)| (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 7389 Score = 30.8 bits (68), Expect = 1.3 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Frame = +3 Query: 93 CLDKQGGEGHACISQQRAKKEEEKTRWSNV*RREPSGEK---KCSRAEETHIHPTPGKRD 263 C D + EGH C +A E E +S P GEK CS E H T G ++ Sbjct: 3239 CSDLRNKEGHHCPLNPQAVGEAEVEPFSVHIAALPGGEKLGELCSEPPE-HSESTSGSKE 3297 Query: 264 RSHPG 278 RS G Sbjct: 3298 RSSDG 3302
>EF2_CANAL (O13430) Elongation factor 2 (EF-2)| Length = 842 Score = 30.8 bits (68), Expect = 1.3 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 290 VSRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 +S G + G G+ LEI L D ++HAGV R++PP Sbjct: 522 MSESGEHIVAGTGELHLEICLQDLENDHAGVPLRISPP 559
>YHCT_BACSU (P54604) Hypothetical RNA pseudouridine synthase yhcT (EC 5.4.99.-)| (RNA-uridine isomerase) (RNA pseudouridylate synthase) Length = 302 Score = 30.4 bits (67), Expect = 1.7 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Frame = +3 Query: 120 HACISQQRAKKEEEKTRWSNV*RREPSGEKKCSRAEETHIHPTPGKRDRSHPGRWRRS-- 293 HA + QQ KK ++T + E K R ++ I+P G RDRSHP R R S Sbjct: 154 HAILDQQLEKKTLKRTYTA-------IAEGKL-RTKKGTINPPIG-RDRSHPTRRRVSPG 204 Query: 294 HDTAASFSAVLASDWRLHLTMVSM 365 TA + V+AS+ + L++V + Sbjct: 205 GQTAVTHFKVMASNAKERLSLVEL 228
>GLI3_PANTR (Q5IS56) Zinc finger protein GLI3| Length = 1580 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +2 Query: 128 HLTTTSEKRRRENEMVKCVTKRTKWGEK 211 H +TT+EK++ EN +VKC T RT EK Sbjct: 6 HSSTTTEKKKVENSIVKCST-RTDVSEK 32
>GLI3_HUMAN (P10071) Zinc finger protein GLI3| Length = 1580 Score = 30.0 bits (66), Expect = 2.3 Identities = 15/28 (53%), Positives = 20/28 (71%) Frame = +2 Query: 128 HLTTTSEKRRRENEMVKCVTKRTKWGEK 211 H +TT+EK++ EN +VKC T RT EK Sbjct: 6 HSSTTTEKKKVENSIVKCST-RTDVSEK 32
>RIMM_MYCTU (P66653) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 218 TRRRNTHPSHPGKKGSIASWEVEEVSRHGGEFL 316 TR R P G +GS S+ +E V +HGG L Sbjct: 35 TRLRAKGPFDGGAEGSAVSYVIESVRQHGGRLL 67
>RIMM_MYCBO (P66654) Probable 16S rRNA-processing protein rimM| Length = 176 Score = 29.6 bits (65), Expect = 2.9 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +2 Query: 218 TRRRNTHPSHPGKKGSIASWEVEEVSRHGGEFL 316 TR R P G +GS S+ +E V +HGG L Sbjct: 35 TRLRAKGPFDGGAEGSAVSYVIESVRQHGGRLL 67
>LVA_DROME (Q8MSS1) Protein lava lamp| Length = 2779 Score = 29.6 bits (65), Expect = 2.9 Identities = 19/77 (24%), Positives = 31/77 (40%) Frame = +2 Query: 161 ENEMVKCVTKRTKWGEKMLTRRRNTHPSHPGKKGSIASWEVEEVSRHGGEFLGGLGQRLE 340 E ++C+ +R E ++ HP P + E E GE L L +RLE Sbjct: 611 ERHHLECLGQRRPASEGDAQEQKQVHPPGPSHVSELTQTEQTEEEDSSGETLSQLRERLE 670 Query: 341 IALDDGVDEHAGVIDRV 391 + E V+D++ Sbjct: 671 LF----TQERGEVLDKL 683
>IF2_SALCH (Q57JH9) Translation initiation factor IF-2| Length = 892 Score = 29.3 bits (64), Expect = 3.8 Identities = 23/87 (26%), Positives = 36/87 (41%) Frame = +2 Query: 128 HLTTTSEKRRRENEMVKCVTKRTKWGEKMLTRRRNTHPSHPGKKGSIASWEVEEVSRHGG 307 H+TT+ R+ E+E + V E R RN + P KKG A + + Sbjct: 231 HVTTSQHARQAEDENDREV-------EGGRGRGRNAKAARPAKKGKHAESKADREEARAA 283 Query: 308 EFLGGLGQRLEIALDDGVDEHAGVIDR 388 G G+R +L G + A ++R Sbjct: 284 VRCGKGGKRKGSSLQQGFQKPAQAVNR 310
>DBP10_YARLI (Q6C7X8) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)| Length = 926 Score = 29.3 bits (64), Expect = 3.8 Identities = 20/70 (28%), Positives = 27/70 (38%) Frame = +2 Query: 32 REQLKHIVNLKSINGTCHS*MFGQAGRRGACMHLTTTSEKRRRENEMVKCVTKRTKWGEK 211 +E K + ++ H MFG+ G L +KR RE +K T E Sbjct: 588 QESAKRSKQIMALGWDDHHLMFGEDGESAKDALLARLGQKRIRETVFEFRKSKTTSGAEM 647 Query: 212 MLTRRRNTHP 241 M TRR P Sbjct: 648 MATRRAQLAP 657
>EF2_SACKL (Q875S0) Elongation factor 2 (EF-2)| Length = 842 Score = 29.3 bits (64), Expect = 3.8 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 290 VSRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 +S G + G G+ LEI L D ++HAG+ +++PP Sbjct: 522 MSESGEHIVAGTGELHLEICLQDLENDHAGIPLKISPP 559
>EF2_KLULA (Q6CPQ9) Elongation factor 2 (EF-2)| Length = 842 Score = 29.3 bits (64), Expect = 3.8 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 290 VSRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 +S G + G G+ LEI L D ++HAG+ +++PP Sbjct: 522 MSESGEHIVAGTGELHLEICLQDLENDHAGIPLKISPP 559
>EF2_ASHGO (Q754C8) Elongation factor 2 (EF-2)| Length = 842 Score = 29.3 bits (64), Expect = 3.8 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +2 Query: 290 VSRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 +S G + G G+ LEI L D ++HAG+ +++PP Sbjct: 522 MSESGEHIVAGTGELHLEICLQDLENDHAGIPLKISPP 559
>LRMP_HUMAN (Q12912) Lymphoid-restricted membrane protein (Jaw1 protein)| Length = 555 Score = 28.9 bits (63), Expect = 5.0 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Frame = +3 Query: 144 AKKEEEKTRWSNV*RREPSGEKKCSRAEETHIHPTPGKRDRSHPGRWRRS--HDTAASFS 317 A EEEK EPSGE+ R + + +++P +W S +DT AS++ Sbjct: 429 ADAEEEKCELKTKDDSEPSGEETVERTRKPSL-----SEKKNNPSKWDVSSVYDTIASWA 483 Query: 318 AVLASDWR 341 L S R Sbjct: 484 TNLKSSIR 491
>EF2_YEAST (P32324) Elongation factor 2 (EF-2) (Translation elongation factor| 2) (Eukaryotic elongation factor 2) (eEF2) (Ribosomal translocase) Length = 842 Score = 28.9 bits (63), Expect = 5.0 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +2 Query: 290 VSRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 +S G + G G+ LEI L D +HAGV +++PP Sbjct: 522 MSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPP 559
>EF2_SCHPO (O14460) Elongation factor 2 (EF-2)| Length = 842 Score = 28.9 bits (63), Expect = 5.0 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%) Frame = +2 Query: 293 SRHGGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 S G + G G+ LEI L D ++HAG+ +++PP Sbjct: 523 SESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPP 559
>YHUT_PSEPU (P24696) Hypothetical 21.2 kDa protein in hutC 3'region| Length = 190 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/41 (41%), Positives = 21/41 (51%) Frame = +2 Query: 224 RRNTHPSHPGKKGSIASWEVEEVSRHGGEFLGGLGQRLEIA 346 R +P P K G + EE++R GE L G G RL IA Sbjct: 8 RAQDYPRMPWKNGGGFT---EEITRDSGEGLDGFGWRLSIA 45
>HIS51_PSEAE (Q9HU42) Imidazole glycerol phosphate synthase subunit hisH1 (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH1) (ImGP synthase subunit hisH1) (IGPS subunit hisH1) Length = 213 Score = 28.5 bits (62), Expect = 6.6 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 6/55 (10%) Frame = -3 Query: 343 NLQSLAKTAEKLAA----VS*DLLHLPGCDRSLFPGVGWM--CVSSAREHFFSPL 197 NL S+AK E + A VS D + DR +FPGVG + C++ R F L Sbjct: 14 NLHSVAKALEHVGAGRVLVSSDAAVIREADRVVFPGVGAIRDCMAEIRRLGFDAL 68
>IF2_SALTY (Q9ZF31) Translation initiation factor IF-2| Length = 892 Score = 28.1 bits (61), Expect = 8.6 Identities = 23/87 (26%), Positives = 36/87 (41%) Frame = +2 Query: 128 HLTTTSEKRRRENEMVKCVTKRTKWGEKMLTRRRNTHPSHPGKKGSIASWEVEEVSRHGG 307 H+TT+ R+ E+E + V E R RN + P KKG A + + Sbjct: 231 HVTTSQHARQAEDENDREV-------EGGRGRGRNAKAARPAKKGKHAESKADREEARAA 283 Query: 308 EFLGGLGQRLEIALDDGVDEHAGVIDR 388 G G+R +L G + A ++R Sbjct: 284 VRGGKGGKRKGSSLQQGFQKPAQAVNR 310
>IF2_SALTI (Q8Z3H7) Translation initiation factor IF-2| Length = 892 Score = 28.1 bits (61), Expect = 8.6 Identities = 23/87 (26%), Positives = 36/87 (41%) Frame = +2 Query: 128 HLTTTSEKRRRENEMVKCVTKRTKWGEKMLTRRRNTHPSHPGKKGSIASWEVEEVSRHGG 307 H+TT+ R+ E+E + V E R RN + P KKG A + + Sbjct: 231 HVTTSQHARQAEDENDREV-------EGGRGRGRNAKAARPAKKGKHAESKADREEARAA 283 Query: 308 EFLGGLGQRLEIALDDGVDEHAGVIDR 388 G G+R +L G + A ++R Sbjct: 284 VRGGKGGKRKGSSLQQGFQKPAQAVNR 310
>IF2_SALPA (Q5PLB0) Translation initiation factor IF-2| Length = 892 Score = 28.1 bits (61), Expect = 8.6 Identities = 23/87 (26%), Positives = 36/87 (41%) Frame = +2 Query: 128 HLTTTSEKRRRENEMVKCVTKRTKWGEKMLTRRRNTHPSHPGKKGSIASWEVEEVSRHGG 307 H+TT+ R+ E+E + V E R RN + P KKG A + + Sbjct: 231 HVTTSQHARQAEDENDREV-------EGGRGRGRNAKAARPAKKGKHAESKADREEARAA 283 Query: 308 EFLGGLGQRLEIALDDGVDEHAGVIDR 388 G G+R +L G + A ++R Sbjct: 284 VRGGKGGKRKGSSLQQGFQKPAQAVNR 310
>SON_MOUSE (Q9QX47) SON protein| Length = 2404 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Frame = +3 Query: 135 QQRAKKEEEKTRWSNV*RREPSGEKKCSRAEETHIHPTPGKRDRSH-PGRWRRS 293 ++R+ K K+R R +K +RA TP +R RSH P R RRS Sbjct: 1876 RKRSPKHRSKSRERKRKRSSSRDNRKAARARSR----TPSRRSRSHTPSRRRRS 1925
>DFFB_RAT (Q99N34) DNA fragmentation factor 40 kDa subunit (EC 3.-.-.-)| (DFF-40) (Caspase-activated deoxyribonuclease) (Caspase-activated DNase) (CAD) Length = 349 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 14/64 (21%) Frame = -3 Query: 238 MCVSSAREHFFSPLGSLRHTFDHLVFSSSFFARCCE----------MHACPSP----PCL 101 M ++ARE + L S+ H + ++ S+F R E +C P CL Sbjct: 180 MVDAAAREEYLRVLSSMCHKLKSVQYNGSYFDRGAEASSRLCTPEGWFSCQGPFDLESCL 239 Query: 100 SKHS 89 SKHS Sbjct: 240 SKHS 243
>VE2_HPV22 (P50768) Regulatory protein E2| Length = 436 Score = 28.1 bits (61), Expect = 8.6 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%) Frame = +2 Query: 107 GRRGACMHLTTTSEKRRRENEMVKCVTKRTKWGEKMLTRRRNTHPSHPGKKGS--IASWE 280 GR+ + +TT ++RRE + + T+R K TR R+ G + + S E Sbjct: 234 GRKASSPTITTIRRQKRRERQRQETPTRRRK------TRSRSRSTEQRGGRATRRSLSRE 287 Query: 281 VEEVSRHGGEFLGG 322 E R GG GG Sbjct: 288 SAESPRRGGRGGGG 301
>SH2P1_MOUSE (Q62018) SH2 domain-binding protein 1 (Tetratricopeptide| repeat-containing, SH2-binding phosphoprotein of 150 kDa) (TPR-containing, SH2-binding phosphoprotein of 150 kDa) (p150TSP) Length = 1173 Score = 28.1 bits (61), Expect = 8.6 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = +3 Query: 132 SQQRAKKEEEKTRWSNV*RREPSGEKKCSRAEETHIHPTPGKR 260 S+Q ++EE R RR P GE+ S EET P P KR Sbjct: 943 SEQEGEEEEGGERKKKRRRRPPKGEEG-SEEEETENGPKPKKR 984
>VWF_BOVIN (P80012) Von Willebrand factor precursor (vWF) (Fragment)| Length = 937 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -3 Query: 220 REHFFSPLGSLRHTFDHLVFSSSFFARCCEMHACPSPPCLSKHSRMTSTIDR 65 R+ F +P G + +H S A C ++ PS PC S + R+T D+ Sbjct: 531 RDDFLTPAGLVEPLVEHFGNSWKLRADCEDLQEQPSDPC-SLNPRLTKFADQ 581
>EF2_SACCA (Q875Z2) Elongation factor 2 (EF-2)| Length = 842 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 302 GGEFLGGLGQ-RLEIALDDGVDEHAGVIDRVTPP 400 G + G G+ LEI L D ++HAGV +++PP Sbjct: 526 GEHIVAGTGELHLEICLQDLENDHAGVPLKISPP 559 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,611,309 Number of Sequences: 219361 Number of extensions: 1098213 Number of successful extensions: 3853 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 3735 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3850 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
