Clone Name | rbart45e01 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 2e-24 Identities = 104/117 (88%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 301 cggcggcgagtttctcggcggtcttggccagcgactggagattgcacttgacgatggtgt 360 |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 10391056 cggcggcgagcttctcggcggtcttggcgagagactggaggttgcacttgacgatggtgt 10391115 Query: 361 cgatgaacacgcgggtgtcatcgatcgtgttaccccgccggcacgtccacgacgtag 417 ||| ||||||||||||||| ||| |||||| |||| |||||||| ||||||||| Sbjct: 10391116 cgacgaacacgcgggtgtcctcgggcgtgtt-gcccgggggcacgtcgacgacgtag 10391171 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 215 ctcacgcgccgaagaaacacacatccatcc 244 |||||||||||||||||||||||||||||| Sbjct: 10390962 ctcacgcgccgaagaaacacacatccatcc 10390991
>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0039F10, complete sequence Length = 139714 Score = 121 bits (61), Expect = 2e-24 Identities = 104/117 (88%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 301 cggcggcgagtttctcggcggtcttggccagcgactggagattgcacttgacgatggtgt 360 |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 47609 cggcggcgagcttctcggcggtcttggcgagagactggaggttgcacttgacgatggtgt 47668 Query: 361 cgatgaacacgcgggtgtcatcgatcgtgttaccccgccggcacgtccacgacgtag 417 ||| ||||||||||||||| ||| |||||| |||| |||||||| ||||||||| Sbjct: 47669 cgacgaacacgcgggtgtcctcgggcgtgtt-gcccgggggcacgtcgacgacgtag 47724 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 215 ctcacgcgccgaagaaacacacatccatcc 244 |||||||||||||||||||||||||||||| Sbjct: 47515 ctcacgcgccgaagaaacacacatccatcc 47544
>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03, from chromosome 3, complete sequence Length = 125800 Score = 121 bits (61), Expect = 2e-24 Identities = 104/117 (88%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 301 cggcggcgagtttctcggcggtcttggccagcgactggagattgcacttgacgatggtgt 360 |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 104522 cggcggcgagcttctcggcggtcttggcgagagactggaggttgcacttgacgatggtgt 104581 Query: 361 cgatgaacacgcgggtgtcatcgatcgtgttaccccgccggcacgtccacgacgtag 417 ||| ||||||||||||||| ||| |||||| |||| |||||||| ||||||||| Sbjct: 104582 cgacgaacacgcgggtgtcctcgggcgtgtt-gcccgggggcacgtcgacgacgtag 104637 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 215 ctcacgcgccgaagaaacacacatccatcc 244 |||||||||||||||||||||||||||||| Sbjct: 104428 ctcacgcgccgaagaaacacacatccatcc 104457
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 2e-24 Identities = 104/117 (88%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 301 cggcggcgagtttctcggcggtcttggccagcgactggagattgcacttgacgatggtgt 360 |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 10389157 cggcggcgagcttctcggcggtcttggcgagagactggaggttgcacttgacgatggtgt 10389216 Query: 361 cgatgaacacgcgggtgtcatcgatcgtgttaccccgccggcacgtccacgacgtag 417 ||| ||||||||||||||| ||| |||||| |||| |||||||| ||||||||| Sbjct: 10389217 cgacgaacacgcgggtgtcctcgggcgtgtt-gcccgggggcacgtcgacgacgtag 10389272 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 215 ctcacgcgccgaagaaacacacatccatcc 244 |||||||||||||||||||||||||||||| Sbjct: 10389063 ctcacgcgccgaagaaacacacatccatcc 10389092
>dbj|AK108414.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H05, full insert sequence Length = 1173 Score = 121 bits (61), Expect = 2e-24 Identities = 104/117 (88%), Gaps = 1/117 (0%) Strand = Plus / Minus Query: 301 cggcggcgagtttctcggcggtcttggccagcgactggagattgcacttgacgatggtgt 360 |||||||||| ||||||||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 763 cggcggcgagcttctcggcggtcttggcgagagactggaggttgcacttgacgatggtgt 704 Query: 361 cgatgaacacgcgggtgtcatcgatcgtgttaccccgccggcacgtccacgacgtag 417 ||| ||||||||||||||| ||| |||||| |||| |||||||| ||||||||| Sbjct: 703 cgacgaacacgcgggtgtcctcgggcgtgtt-gcccgggggcacgtcgacgacgtag 648 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 215 ctcacgcgccgaagaaacacacatccatcc 244 |||||||||||||||||||||||||||||| Sbjct: 857 ctcacgcgccgaagaaacacacatccatcc 828
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 327 gccagcgactggagattgcacttgacgatggtgtcgatgaacacgcgggt 376 |||||||||||||| |||||| |||||||||||||| ||||| |||||| Sbjct: 26637 gccagcgactggaggttgcaccggacgatggtgtcgacgaacatgcgggt 26686
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 6e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 327 gccagcgactggagattgcacttgacgatggtgtcgatgaacacgcgggt 376 |||||||||||||| |||||| |||||||||||||| ||||| |||||| Sbjct: 23094862 gccagcgactggaggttgcaccggacgatggtgtcgacgaacatgcgggt 23094911
>emb|AL645964.8| Mouse DNA sequence from clone RP23-335G10 on chromosome 11 Contains the 3' end of the Gabrb2 gene for subunit beta 2 gamma-aminobutyric acid (GABA-A) receptor, complete sequence Length = 195923 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 97 tggacaagcagggaggagaggg 118 |||||||||||||||||||||| Sbjct: 193684 tggacaagcagggaggagaggg 193663
>emb|AL161790.23| Human DNA sequence from clone RP11-558L8 on chromosome 9 Contains part of the gene for a novel protein (KIAA1608), complete sequence Length = 120896 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 tatagtgaatttgaagtctat 69 ||||||||||||||||||||| Sbjct: 12910 tatagtgaatttgaagtctat 12890
>ref|NM_102673.4| Arabidopsis thaliana ERD2; receptor AT1G29330 (ERD2) mRNA, complete cds Length = 1392 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 109 aaaagaagaagagaaaacga 90
>ref|NM_115002.3| Arabidopsis thaliana YLS2; strictosidine synthase AT3G51430 (YLS2) mRNA, complete cds Length = 1400 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 121 aagaagaagagaaaacgaga 102
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 44842 aaaaaagaagaagagaaaac 44861
>ref|XM_631130.1| Dictyostelium discoideum myosin (DDB0188441), partial mRNA Length = 7080 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 6828 gaaaaaagaagaagagaaaa 6847 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 6813 gaaaaaagaagaagagaaaa 6832 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 6798 gaaaaaagaagaagagaaaa 6817
>gb|AC166159.2| Mus musculus BAC clone RP24-129B16 from chromosome 15, complete sequence Length = 216481 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 gaatttgaagtctatcaatg 74 |||||||||||||||||||| Sbjct: 149850 gaatttgaagtctatcaatg 149831
>gb|AC084023.8| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0062C05 map S21174S, complete sequence Length = 178867 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 116464 gaaaaaagaagaagagaaaa 116483
>gb|AC113007.11| Mus musculus chromosome 3, clone RP23-349H13, complete sequence Length = 180852 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 13693 gaaaaaagaagaagagaaaa 13712
>gb|AC150574.2| Bos taurus BAC CH240-237H4 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 142758 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 93495 gaaaaaagaagaagagaaaa 93476
>gb|AC108753.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0010B06, complete sequence Length = 129310 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 108832 aaaaaagaagaagagaaaac 108851
>gb|BT010753.1| Arabidopsis thaliana At1g73860 gene, complete cds Length = 1116 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 38 aagaagaagagaaaacgaga 19
>emb|Z46242.2|CEF35G12 Caenorhabditis elegans Cosmid F35G12, complete sequence Length = 39709 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 36154 aaaaaagaagaagagaaaac 36173
>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete sequence Length = 184128 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 agagaaaacgagatggtcaaatgt 181 ||||||||| |||||||||||||| Sbjct: 53445 agagaaaaccagatggtcaaatgt 53468
>gb|AC117190.3| Mus musculus BAC clone RP23-55A21 from 2, complete sequence Length = 189549 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ggaggagaggggcatgcatg 127 |||||||||||||||||||| Sbjct: 112780 ggaggagaggggcatgcatg 112761
>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence Length = 218079 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 158 agagaaaacgagatggtcaaatgt 181 ||||||||| |||||||||||||| Sbjct: 152652 agagaaaaccagatggtcaaatgt 152675
>ref|NM_018279.3| Homo sapiens transmembrane protein 19 (TMEM19), mRNA Length = 4659 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 cagagagcaactcaaacatatagt 54 |||||||||||| ||||||||||| Sbjct: 2321 cagagagcaactgaaacatatagt 2298
>gb|BC008596.1| Homo sapiens transmembrane protein 19, mRNA (cDNA clone MGC:16985 IMAGE:4154303), complete cds Length = 3328 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 cagagagcaactcaaacatatagt 54 |||||||||||| ||||||||||| Sbjct: 2321 cagagagcaactgaaacatatagt 2298
>emb|AL589642.6| Human DNA sequence from clone RP11-555J4 on chromosome 9 Contains a TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa (TAF1) (CCG1, P250) pseudogene, two novel genes and a heterogeneous nuclear ribonucleoprotein C (C1/C2) (HNRPC) pseudogene, complete sequence Length = 92982 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 49270 gaaaaaagaagaagagaaaa 49289
>emb|AL392123.12| Human DNA sequence from clone RP13-404M3 on chromosome 10 Contains part of the PARD3 gene for par-3 partitioning defective 3 homolog (C.elegans) and a CpG island, complete sequence Length = 104357 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 24541 gaaaaaagaagaagagaaaa 24560
>emb|AL359502.14| Human DNA sequence from clone RP11-120E13 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 153211 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 cacatatatacagagagcaa 40 |||||||||||||||||||| Sbjct: 65600 cacatatatacagagagcaa 65619
>emb|AL159163.40| Human DNA sequence from clone RP11-514O12 on chromosome 6 Contains the 5' end of a variant of the RPS6KA2 gene for ribosomal protein S6 kinase, 90kD, polypeptide 2 (RSK3), a novel gene, the 3' end of the gene for ribonuclease 6 precursor (RNASE6PL)(FLJ10907) and 2 CpG islands, complete sequence Length = 156938 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 atctataccacatatataca 32 |||||||||||||||||||| Sbjct: 4603 atctataccacatatataca 4622
>emb|AL118508.27|HSJ737E23 Human DNA sequence from clone RP4-737E23 on chromosome 20p11.1-11.23 Contains the gene complement component C1q receptor (C1QR), a putative novel gene, ESTs, STSs and GSSs, complete sequence Length = 123832 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 agcagggaggagaggggcat 122 |||||||||||||||||||| Sbjct: 43554 agcagggaggagaggggcat 43535
>emb|AL035705.22|HS758N20 Human DNA sequence from clone RP4-758N20 on chromosome 1p31.3-32.2 Contains the 3' end of the PRKAA2 gene for protein kinase AMP-activated alpha 2 catalytic subunit, the 3' end of a novel gene, complete sequence Length = 129618 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 tcttgaatgtttggacaagcaggg 109 |||||| ||||||||||||||||| Sbjct: 70633 tcttgattgtttggacaagcaggg 70610
>gb|AC132807.3| Homo sapiens chromosome 3 clone RP11-147G2, complete sequence Length = 171678 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 104823 gaaaaaagaagaagagaaaa 104804
>emb|CR380951.1| Candida glabrata strain CBS138 chromosome E complete sequence Length = 687501 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 168119 gaaaaaagaagaagagaaaa 168138
>emb|AL606589.3|OSJN00021 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008A08, complete sequence Length = 130521 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagaagagaaaacgagatggt 174 |||||||| ||||||||||||||| Sbjct: 53023 aagaagaaaagaaaacgagatggt 53046
>emb|AL133452.1|ATF26O13 Arabidopsis thaliana DNA chromosome 3, BAC clone F26O13 Length = 94349 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 32306 aagaagaagagaaaacgaga 32287
>emb|AL035245.1|DMBH61I5 Drosophila melanogaster BAC clone BACH61I5 Length = 29358 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaacgaga 170 |||||||| ||||||||||||||| Sbjct: 28695 aaaaaagatgaagagaaaacgaga 28718
>emb|CR937926.1| Single read from an extremity of a cDNA clone made from Aedes aegypti total adult females. 5-prime end of clone KW0AAB1YA02AAM1 from strain Liverpool of Aedes aegypti (yellow fever mosquito) Length = 773 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaacgaga 170 |||||||||||||| ||||||||| Sbjct: 206 aaaaaagaagaagataaaacgaga 229
>gb|AC091221.3| Drosophila melanogaster 3L BAC RP98-9I19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 185790 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gaaccaagtggggagaaaaa 211 |||||||||||||||||||| Sbjct: 90137 gaaccaagtggggagaaaaa 90156
>gb|AC010037.7| Drosophila melanogaster 3L BAC RP98-6E4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187555 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 gaaccaagtggggagaaaaa 211 |||||||||||||||||||| Sbjct: 144742 gaaccaagtggggagaaaaa 144761
>gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169618 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaacgaga 170 |||||||| ||||||||||||||| Sbjct: 112982 aaaaaagatgaagagaaaacgaga 113005
>gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-377K22, complete sequence Length = 174162 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 tcttgaatgtttggacaagcaggg 109 |||||| ||||||||||||||||| Sbjct: 162035 tcttgattgtttggacaagcaggg 162058
>gb|AC090588.5| Homo sapiens chromosome 11, clone RP11-384E5, complete sequence Length = 152572 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 8735 aaaaaagaagaagagaaaac 8716
>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 Length = 1779707 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 1299361 gaaaaaagaagaagagaaaa 1299342
>gb|AY093240.1| Arabidopsis thaliana ER lumen protein retaining receptor; 3333-1007 (At1g29330) mRNA, complete cds Length = 1009 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 79 aaaagaagaagagaaaacga 60
>ref|NM_142142.1| Drosophila melanogaster Rrp6 CG7292-RA (Rrp6), mRNA Length = 2912 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 150 aaaaaagaagaagagaaaac 169
>gb|AF462858.1|AF462858 Arabidopsis thaliana AT3g51430/F26O13_70 mRNA, complete cds Length = 1306 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 117 aagaagaagagaaaacgaga 98
>gb|AY065039.1| Arabidopsis thaliana AT3g51430/F26O13_70 mRNA, complete cds Length = 1350 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 93 aagaagaagagaaaacgaga 74
>ref|XM_690401.1| PREDICTED: Danio rerio similar to CREB-binding protein (LOC567111), mRNA Length = 4770 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 gccgaagaaacacacatcca 241 |||||||||||||||||||| Sbjct: 1827 gccgaagaaacacacatcca 1808
>emb|BX510989.13| Zebrafish DNA sequence from clone CH211-76L23 in linkage group 3, complete sequence Length = 169229 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 141 cgagcgaaaaaagaagaagagaaa 164 ||||||||||||||| |||||||| Sbjct: 65046 cgagcgaaaaaagaaaaagagaaa 65023
>dbj|AK084349.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched library, clone:D230029C14 product:unclassifiable, full insert sequence Length = 1174 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 864 gaaaaaagaagaagagaaaa 845
>gb|AF212831.2|AF212831 Homo sapiens chromosome 21 clone BAC R-45M19 map 21q21, complete sequence Length = 159255 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 151498 aaaaaagaagaagagaaaac 151517
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence Length = 4332241 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgaaaaaagaagaagagaaa 164 |||||||||||||||||||| Sbjct: 2814713 cgaaaaaagaagaagagaaa 2814694
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aagaagaagagaaaacgagatggt 174 |||||||| ||||||||||||||| Sbjct: 15866458 aagaagaaaagaaaacgagatggt 15866481
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gcatgcatgcatctcacaac 138 |||||||||||||||||||| Sbjct: 8238263 gcatgcatgcatctcacaac 8238244
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 18818728 gaaaaaagaagaagagaaaa 18818747
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 19325616 aaaaaagaagaagagaaaac 19325635
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaacgaga 170 ||||||||||||||||| |||||| Sbjct: 22921761 aaaaaagaagaagagaacacgaga 22921784
>emb|BX815635.1|CNS0ACYP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS79ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1144 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 109 aaaagaagaagagaaaacga 90
>emb|BX818025.1|CNS0ACEW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL57ZD04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 895 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 51 aaaagaagaagagaaaacga 32
>emb|BX817758.1|CNS0ACIF Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL3ZG06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 909 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 49 aaaagaagaagagaaaacga 30
>gb|DQ009621.1| Methanotorris igneus ribosomal protein L1 operon, complete sequence Length = 2320 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 2124 gaaaaaagaagaagagaaaa 2143 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 1666 gaaaaaagaagaagagaaaa 1685
>emb|BX824665.1|CNS0A5Q7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH63ZC05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1332 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 104 aagaagaagagaaaacgaga 85
>emb|BX824467.1|CNS0A5S1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH50ZB05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1383 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 104 aagaagaagagaaaacgaga 85
>emb|BX823369.1|CNS0A5CZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS29ZD04 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1285 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 114 aagaagaagagaaaacgaga 95
>emb|BX824355.1|CNS0A4NT Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH42ZA07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1262 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 119 aagaagaagagaaaacgaga 100
>gb|AC008136.4|AC008136 Drosophila melanogaster, chromosome 3R, region 88D-88E, BAC clone BACR08H11, complete sequence Length = 154890 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 74508 aaaaaagaagaagagaaaac 74489
>gb|AC005721.3|AC005721 Drosophila melanogaster, chromosome 3R, region 88D8-88E1, BAC clone BACR48E23, complete sequence Length = 203183 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 52127 aaaaaagaagaagagaaaac 52108
>gb|AC007405.6| Homo sapiens BAC clone RP11-570C16 from 2, complete sequence Length = 193212 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 20782 gaaaaaagaagaagagaaaa 20801
>gb|AC093873.2| Homo sapiens BAC clone RP11-615B17 from 2, complete sequence Length = 210320 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 tggggagaaaaaatgctcac 219 |||||||||||||||||||| Sbjct: 60280 tggggagaaaaaatgctcac 60261
>gb|AC068667.6|AC068667 Arabidopsis thaliana chromosome 1 BAC F15D2 genomic sequence, complete sequence Length = 130653 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 3389 aaaagaagaagagaaaacga 3408
>gb|AC084476.1|CBRG01P23 Caenorhabditis briggsae cosmid G01P23, complete sequence Length = 20422 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gcgaaaaaagaagaagagaa 163 |||||||||||||||||||| Sbjct: 12981 gcgaaaaaagaagaagagaa 12962
>gb|AC084460.1|AC084460 Caenorhabditis briggsae cosmid CB033D02, complete sequence Length = 77513 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 62788 gaaaaaagaagaagagaaaa 62807
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaacgaga 170 ||||||||||||||||| |||||| Sbjct: 125318 aaaaaagaagaagagaacacgaga 125341
>gb|AC073612.17| Homo sapiens 12 BAC RP11-293I14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 54262 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 31 cagagagcaactcaaacatatagt 54 |||||||||||| ||||||||||| Sbjct: 6719 cagagagcaactgaaacatatagt 6742
>gb|AY087326.1| Arabidopsis thaliana clone 34197 mRNA, complete sequence Length = 1306 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 121 aagaagaagagaaaacgaga 102
>gb|AC021043.4|AC021043 Arabidopsis thaliana chromosome I BAC F28N24 genomic sequence, complete sequence Length = 154716 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 2428 aaaagaagaagagaaaacga 2409
>emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chromosome 4, complete sequence Length = 205765 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gcagggaggagaggggcatg 123 |||||||||||||||||||| Sbjct: 37316 gcagggaggagaggggcatg 37297
>dbj|BS000032.1| Pan troglodytes chromosome 22 clone:RP43-047I19, map 22, complete sequences Length = 166625 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 11820 aaaaaagaagaagagaaaac 11839
>dbj|BS000031.1| Pan troglodytes chromosome 22 clone:PTB-082B23, map 22, complete sequences Length = 218696 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 155620 aaaaaagaagaagagaaaac 155639
>emb|AL163213.2|HS21C013 Homo sapiens chromosome 21 segment HS21C013 Length = 340000 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 312164 aaaaaagaagaagagaaaac 312183
>emb|CR846080.8| Zebrafish DNA sequence from clone DKEY-29P9 in linkage group 3, complete sequence Length = 242078 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 gccgaagaaacacacatcca 241 |||||||||||||||||||| Sbjct: 223212 gccgaagaaacacacatcca 223231
>emb|CR376826.12| Zebrafish DNA sequence from clone DKEYP-78F1 in linkage group 20, complete sequence Length = 153344 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 113266 gaaaaaagaagaagagaaaa 113285
>gb|AE003706.5| Drosophila melanogaster chromosome 3R, section 44 of 118 of the complete sequence Length = 270961 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 188654 aaaaaagaagaagagaaaac 188635
>gb|AE003556.3| Drosophila melanogaster chromosome 3L, section 29 of 83 of the complete sequence Length = 281917 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 gaaccaagtggggagaaaaa 211 |||||||||||||||||||| Sbjct: 77325 gaaccaagtggggagaaaaa 77306
>gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 of 74 of the complete sequence Length = 300933 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 147 aaaaaagaagaagagaaaacgaga 170 |||||||| ||||||||||||||| Sbjct: 239959 aaaaaagatgaagagaaaacgaga 239982
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome I, complete sequence Length = 4277185 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cgaaaaaagaagaagagaaa 164 |||||||||||||||||||| Sbjct: 1479305 cgaaaaaagaagaagagaaa 1479324
>emb|AL929379.14| Zebrafish DNA sequence from clone CH211-156H6, complete sequence Length = 167232 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 28360 gaaaaaagaagaagagaaaa 28341
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gaaaaaagaagaagagaaaa 165 |||||||||||||||||||| Sbjct: 18829982 gaaaaaagaagaagagaaaa 18830001
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gcatgcatgcatctcacaac 138 |||||||||||||||||||| Sbjct: 8238144 gcatgcatgcatctcacaac 8238125
>emb|AL772416.6|CNS08C9U Oryza sativa chromosome 12, . BAC OSJNBa0095H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 142670 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 119 gcatgcatgcatctcacaac 138 |||||||||||||||||||| Sbjct: 104632 gcatgcatgcatctcacaac 104651
>emb|AL109771.2|HSO2032 Homo sapiens chromosome 21, 22 kb sequence from PAC RPCI-1 32O20 map 21q21 region D21S189-LA297, complete sequence Length = 22342 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 aaaaaagaagaagagaaaac 166 |||||||||||||||||||| Sbjct: 242 aaaaaagaagaagagaaaac 223
>emb|AL929187.5| Mouse DNA sequence from clone RP23-8G6 on chromosome 2, complete sequence Length = 145146 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 ggaggagaggggcatgcatg 127 |||||||||||||||||||| Sbjct: 44185 ggaggagaggggcatgcatg 44166
>gb|L23573.1|ATHERRETRE Arabidopsis thaliana ER retention receptor mRNA Length = 974 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 aaaagaagaagagaaaacga 168 |||||||||||||||||||| Sbjct: 38 aaaagaagaagagaaaacga 19
>dbj|AB047805.1| Arabidopsis thaliana YLS2 mRNA for strictosidine synthase-like protein, complete cds Length = 1264 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 aagaagaagagaaaacgaga 170 |||||||||||||||||||| Sbjct: 90 aagaagaagagaaaacgaga 71 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,656,476 Number of Sequences: 3902068 Number of extensions: 4656476 Number of successful extensions: 205132 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 204279 Number of HSP's gapped (non-prelim): 853 length of query: 417 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 395 effective length of database: 17,147,199,772 effective search space: 6773143909940 effective search space used: 6773143909940 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)