ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45d11 |
|---|---|
| Clone Library Name | barley_pub |
>SBP_ARATH (O23264) Putative selenium-binding protein| Length = 490 Score = 111 bits (278), Expect = 4e-25 Identities = 47/55 (85%), Positives = 54/55 (98%) Frame = -3 Query: 347 LKKGSHMLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 ++KGSH++QIDVDTEKGGL++NPDFFVDFG EP+GPSLAHEMRYPGGDCTSDIWI Sbjct: 436 MEKGSHIIQIDVDTEKGGLTINPDFFVDFGDEPDGPSLAHEMRYPGGDCTSDIWI 490
>SBP2_MOUSE (Q63836) Selenium-binding protein 2 (56 kDa acetaminophen-binding| protein) (AP56) Length = 472 Score = 92.4 bits (228), Expect = 2e-19 Identities = 39/55 (70%), Positives = 48/55 (87%) Frame = -3 Query: 347 LKKGSHMLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 +++GS MLQ+DVDT GGL +NP+F VDFG EP GP+LAHE+RYPGGDC+SDIWI Sbjct: 418 IREGSVMLQVDVDTVNGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>SBP1_HUMAN (Q13228) Selenium-binding protein 1| Length = 472 Score = 91.3 bits (225), Expect = 5e-19 Identities = 39/55 (70%), Positives = 48/55 (87%) Frame = -3 Query: 347 LKKGSHMLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 +++GS MLQ+DVDT KGGL +NP+ VDFG EP GP+LAHE+RYPGGDC+SDIWI Sbjct: 418 IREGSVMLQVDVDTVKGGLKLNPNCLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472
>SBP1_MOUSE (P17563) Selenium-binding protein 1 (56 kDa selenium-binding| protein) (SP56) Length = 472 Score = 90.1 bits (222), Expect = 1e-18 Identities = 39/55 (70%), Positives = 47/55 (85%) Frame = -3 Query: 347 LKKGSHMLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI 183 +++GS MLQIDVDT GGL +NP+F VDFG EP G +LAHE+RYPGGDC+SDIWI Sbjct: 418 IREGSMMLQIDVDTVNGGLKLNPNFLVDFGKEPLGAALAHELRYPGGDCSSDIWI 472
>CBL_MOUSE (P22682) E3 ubiquitin-protein ligase CBL (EC 6.3.2.-) (Signal| transduction protein CBL) (Proto-oncogene c-CBL) (Casitas B-lineage lymphoma proto-oncogene) Length = 913 Score = 31.2 bits (69), Expect = 0.66 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = -1 Query: 298 GGSVSTPTSSWISAPSLKVPPWPMR*DILGETAPL 194 G V P+S + AP +PP P R D+L + AP+ Sbjct: 473 GAKVERPSSPFSMAPQASLPPVPPRLDLLQQRAPV 507
>NCPR_SCHPO (P36587) NADPH--cytochrome P450 reductase (EC 1.6.2.4) (CPR)| (P450R) Length = 678 Score = 30.8 bits (68), Expect = 0.86 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%) Frame = +1 Query: 112 RNHLNYSELNTMDLQLHMLHPSS*IHMSEVQSPPGYLISWAKEGP----SGSVPKSTKKS 279 +NH+ Y L T L H H +H ++ P G + + EGP +G +P KKS Sbjct: 470 KNHIFYG-LTTNYLLAHCRH----MHGEKIPHPNG--LEYTLEGPRKNWTGKIPMFVKKS 522 Query: 280 GLTLSPP 300 L+PP Sbjct: 523 TFRLAPP 529
>FRU_DROME (Q8IN81) Sex determination protein fruitless| Length = 955 Score = 30.8 bits (68), Expect = 0.86 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 154 QLHMLHPSS*IHMSEVQSPPGYLISWAKEGPSGSVPKST--KKSGLTLSPPFSVSTS 318 QLH HP S H S QS P Y + +GSV S SG S P SV+TS Sbjct: 787 QLHQ-HPPSATHPSHSQSSPHYPSASGAGAGAGSVSVSIAGSASGSATSAPASVATS 842
>AGRN_DISOM (Q90404) Agrin (Fragment)| Length = 1328 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/33 (42%), Positives = 15/33 (45%) Frame = +1 Query: 208 PPGYLISWAKEGPSGSVPKSTKKSGLTLSPPFS 306 PP W K P VP +T K T PPFS Sbjct: 564 PPPATTRWPKVLPHAKVPSTTTKPATTRRPPFS 596
>T1MD_MYCPN (P75436) Putative type I restriction enzyme MpnORFDP M protein (EC| 2.1.1.72) (M.MpnORFDP) (H91_orf543) Length = 543 Score = 30.0 bits (66), Expect = 1.5 Identities = 20/61 (32%), Positives = 28/61 (45%) Frame = +1 Query: 115 NHLNYSELNTMDLQLHMLHPSS*IHMSEVQSPPGYLISWAKEGPSGSVPKSTKKSGLTLS 294 N +N L T + + H ++ S+ V S P Y ISWA + S V K TL+ Sbjct: 289 NIINADTLTTKEWEKHYVNCSNENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLA 348 Query: 295 P 297 P Sbjct: 349 P 349
>CP138_MYCTU (P63717) Putative cytochrome P450 138 (EC 1.14.-.-)| Length = 441 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +3 Query: 174 FVLNPYVRGAVSPRISHLMGQGGTFRLGAEIHEEVGVDTEPPFLG 308 F +P G + P +S + G G F L + H PPF G Sbjct: 73 FTSSPEELGNIQPNLSRMFGSGSVFALDGDDHRRRRRLLAPPFHG 117
>CP138_MYCBO (P63718) Putative cytochrome P450 138 (EC 1.14.-.-)| Length = 441 Score = 29.3 bits (64), Expect = 2.5 Identities = 14/45 (31%), Positives = 19/45 (42%) Frame = +3 Query: 174 FVLNPYVRGAVSPRISHLMGQGGTFRLGAEIHEEVGVDTEPPFLG 308 F +P G + P +S + G G F L + H PPF G Sbjct: 73 FTSSPEELGNIQPNLSRMFGSGSVFALDGDDHRRRRRLLAPPFHG 117
>BIP2_MAIZE (P24067) Luminal-binding protein 2 precursor (BiP2) (Heat shock| protein 70 homolog 2) (B70) (B-70) Length = 663 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/57 (35%), Positives = 28/57 (49%) Frame = -3 Query: 347 LKKGSHMLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI*D 177 + K +L+ D ++ VNPD V FG +G L+ E GGD T DI + D Sbjct: 372 IPKVQQLLRDYFDGKEPNKGVNPDEAVAFGAAVQGSILSGE----GGDETKDILLLD 424
>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein| Length = 977 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 319 STSTPRKGGSVSTPTSSWISAPSLKVPP 236 S STPR G V+ +S +I APS V P Sbjct: 534 SPSTPRSSGPVTATSSLYIPAPSRPVTP 561
>TMPS4_MOUSE (Q8VCA5) Transmembrane protease, serine 4 (EC 3.4.21.-)| (Channel-activating protease 2) (mCAP2) Length = 435 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -1 Query: 346 SRRDLTCCRSTSTPRKGGSVSTPTSSW 266 S R L C +S TPR G V P SW Sbjct: 188 SLRCLDCGKSLKTPRVVGGVEAPVDSW 214
>PITX1_DROME (O18400) Pituitary homeobox 1 homolog (D-PTX1)| Length = 509 Score = 28.5 bits (62), Expect = 4.3 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%) Frame = +3 Query: 147 GSPAAYVTPFVLNPYV-RGAVSPRISHLMGQG-GTFRLGAEIHEEVG 281 G+P Y TP NPY+ R A P +S M T RL A+ H G Sbjct: 432 GAPCPYTTP--ANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAG 476
>STAB1_MOUSE (Q8R4Y4) Stabilin-1 precursor (FEEL-1 protein)| Length = 2571 Score = 28.5 bits (62), Expect = 4.3 Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 14/49 (28%) Frame = +2 Query: 155 SCICYTLRPKSICQRCSLPQ--------------DISSHGPRRDLQARC 259 +C+C S+CQ C P + SHGPR D RC Sbjct: 136 TCVCQGNFSGSVCQECRDPNRFGPDCQSVCNCVHGVCSHGPRGDGSCRC 184
>MNS1_YEAST (P32906) Endoplasmic reticulum mannosyl-oligosaccharide| 1,2-alpha-mannosidase (EC 3.2.1.113) (ER alpha-1,2-mannosidase) (Man(9)-alpha-mannosidase) Length = 549 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/44 (31%), Positives = 28/44 (63%) Frame = +1 Query: 76 PIDTTSHTTPQGRNHLNYSELNTMDLQLHMLHPSS*IHMSEVQS 207 PI+ TSH P+G L + ++++D L +++ SS ++ SE ++ Sbjct: 65 PIEHTSHNMPRGNQPLGWIIVDSVD-TLMLMYNSSTLYKSEFEA 107
>BIP2_TOBAC (Q03682) Luminal-binding protein 2 (BiP 2) (78 kDa| glucose-regulated protein homolog 2) (GRP 78-2) (Fragment) Length = 292 Score = 28.1 bits (61), Expect = 5.6 Identities = 20/55 (36%), Positives = 27/55 (49%) Frame = -3 Query: 341 KGSHMLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYPGGDCTSDIWI*D 177 K +L+ D ++ VNPD V FG +G L+ E GGD T DI + D Sbjct: 1 KVQQLLKDYFDGKEPNKGVNPDEAVAFGAAVQGGILSGE----GGDETKDILLLD 51
>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1| Length = 2042 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 9/49 (18%) Frame = -3 Query: 317 DVDTEKGGLSVNP--------DFFVDFGTE-PEGPSLAHEMRYPGGDCT 198 D D E+ G+ P F + GTE P+ P +AH P G T Sbjct: 322 DTDAEEEGIPATPAVVPVKKRQIFHEVGTESPQAPGVAHAQESPAGSDT 370
>FOXL1_HUMAN (Q12952) Forkhead box protein L1 (Forkhead-related protein FKHL11)| (Forkhead-related transcription factor 7) (FREAC-7) Length = 345 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%) Frame = +1 Query: 202 QSPPG--YLISWAKEGPSGSVPKSTKKSGLTLSPPFSVS 312 Q PP L+ AK GP G + S + +L PPF+ S Sbjct: 273 QKPPSGDELLGGAKPGPGGRLGASLLAASSSLRPPFNAS 311
>CPO_DROME (Q01617) Protein couch potato| Length = 738 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/27 (51%), Positives = 17/27 (62%) Frame = +1 Query: 217 YLISWAKEGPSGSVPKSTKKSGLTLSP 297 YL+ A EG GS+ K T K+G T SP Sbjct: 468 YLLFRAYEGYEGSLLKVTSKNGKTASP 494
>RASA3_HUMAN (Q14644) Ras GTPase-activating protein 3 (GAP1(IP4BP)) (Ins| P4-binding protein) Length = 834 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +2 Query: 68 NLFQLTPHHIQHRREETILITVSSTPWISS 157 NLFQLTPHH + T+ + + + S Sbjct: 495 NLFQLTPHHTDPQTSRTLTLISKTVQTLGS 524
>RASA3_BOVIN (Q28013) Ras GTPase-activating protein 3 (GAP1(IP4BP)) (Ins| P4-binding protein) Length = 834 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 68 NLFQLTPHHIQHRREETILITVSST 142 NLFQLTPHH + T+ + VS T Sbjct: 495 NLFQLTPHHTDPQTSRTLTL-VSKT 518
>SC24B_ARATH (Q9M081) Putative protein transport protein Sec24-like At4g32640| Length = 1069 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%) Frame = -1 Query: 322 RSTSTPRKGGSVSTPTSSWI---SAPSLKVPPWPMR*DILGETAPLT 191 R T P G +V+TP + ++ SAP + PP P+ L PLT Sbjct: 207 RGTQFP--GAAVTTPQAPYVRPPSAPYARTPPQPLGSHSLSGNPPLT 251
>IL9R_HUMAN (Q01113) Interleukin-9 receptor precursor (IL-9R) (CD129 antigen)| Length = 522 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 5/40 (12%) Frame = -3 Query: 173 GCNICSWRSMVLSSL*LR-----WFLPCGVVCDVVSIGIS 69 G C W L S LR W L C +C V +G+S Sbjct: 2 GLGRCIWEGWTLESEALRRDMGTWLLACICICTCVCLGVS 41
>EX3_HAEIN (P44318) Exodeoxyribonuclease III (EC 3.1.11.2) (Exonuclease III)| (EXO III) Length = 267 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/39 (35%), Positives = 23/39 (58%) Frame = -3 Query: 329 MLQIDVDTEKGGLSVNPDFFVDFGTEPEGPSLAHEMRYP 213 ++ D++TE G L+V +F P+G S AHE ++P Sbjct: 91 IIMADLETEFGLLTVINGYF------PQGESRAHETKFP 123
>PERC_AEDAE (P82600) Chorion peroxidase precursor (EC 1.11.1.7) [Contains:| Chorion peroxidase light chain; Chorion peroxidase heavy chain] Length = 791 Score = 27.3 bits (59), Expect = 9.5 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +2 Query: 179 PKSICQRCSLPQDISSHGPRRDLQARCRNPRRSR 280 P++I +RC P S H R + C NP R Sbjct: 204 PRAIRKRCLPPVPCSPHSRYRTIDGSCNNPLPDR 237
>PLMN_MACEU (O18783) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin| heavy chain A; Activation peptide; Plasmin heavy chain A, short form; Plasmin light chain B] Length = 806 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = +2 Query: 143 PWISSCICYTLRPKSICQRCSLPQDIS 223 PW CYT PK + C +PQ +S Sbjct: 536 PW-----CYTTNPKKLFDYCDIPQCVS 557
>CQ10B_RAT (Q5I0I9) Protein COQ10 B, mitochondrial precursor| Length = 240 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/53 (37%), Positives = 24/53 (45%) Frame = +2 Query: 41 EANVRGSIRNLFQLTPHHIQHRREETILITVSSTPWISSCICYTLRPKSICQR 199 EA VRGS RN+ L P IL+ + PW S + PK IC R Sbjct: 26 EARVRGSARNVRYLAPC--------GILMNRTLAPWAS------VLPKEICAR 64 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,745,693 Number of Sequences: 219361 Number of extensions: 1355345 Number of successful extensions: 3662 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3570 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3659 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
