>GAI_ARATH (Q9LQT8) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein) (Restoration of growth on ammonia protein 2)
          Length = 533

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTWTCCT 195
           G GY V ++ DG + LGW   PL A S W   T
Sbjct: 501 GEGYRV-EESDGCLMLGWHTRPLIATSAWKLST 532

>GAI_LYCES (Q7Y1B6) DELLA protein GAI (Gibberellic acid-insensitive mutant|
           protein)
          Length = 588

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V +++DG + LGW   PL A S W
Sbjct: 546 GDGYRV-EENDGCLMLGWHTRPLIATSAW 573

>GAIP_CUCMA (Q6EI06) DELLA protein GAIP (Gibberellic acid-insensitive phloem|
           protein) (GAIP) (CmGAIP)
          Length = 579

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 296 AGLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           +G GY V ++++G++ LGW   PL A S W
Sbjct: 541 SGEGYRV-EENEGSLMLGWHTRPLIATSAW 569

>DWRF8_MAIZE (Q9ST48) DELLA protein DWARF8 (Protein dwarf-8)|
          Length = 630

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V ++ DG + LGW   PL A S W
Sbjct: 595 GDGYRV-EEKDGCLTLGWHTRPLIATSAW 622

>RGL3_ARATH (Q9LF53) DELLA protein RGL3 (RGA-like protein 3)|
          Length = 523

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V +++DG++ L W+  PL A S W
Sbjct: 488 GDGYRV-EENDGSLMLAWQTKPLIAASAW 515

>VTS1_EMENI (Q5BGC4) Protein vts1|
          Length = 611

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 382 AGRRSLL--EMVSCVPAPLVDARRCWPVHARRGWATRWRMTMTARCGLVGRAPHSTPS 215
           +G RS L     + +PAP ++A    P +    WA+     MTA  G    APH   S
Sbjct: 306 SGLRSPLPTSQTATIPAPEIEAPLLSPYNVNASWASMTNTPMTATFGSQLGAPHQQGS 363

>RGA2_BRACM (Q5BN22) DELLA protein RGA2 (RGA-like protein 2) (BrRGA2)|
          Length = 579

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTWTCCTTH 189
           G GY V ++++G + LGW   PL   S W     H
Sbjct: 546 GEGYRV-EENNGCLMLGWHTRPLITTSAWKLSAAH 579

>RGL2_ARATH (Q8GXW1) DELLA protein RGL2 (RGA-like protein 2) (Scarecrow-like|
           protein 19)
          Length = 547

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V +++DG + +GW+  PL   S W
Sbjct: 517 GDGYRV-EENDGCLMIGWQTRPLITTSAW 544

>RGL1_ARATH (Q9C8Y3) DELLA protein RGL1 (RGA-like protein 1) (RGA-like protein)|
          Length = 511

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 287 GYTVADDHDGTVRLGWKGTPLYAVSTW 207
           GY V ++++G + LGW+  PL A S W
Sbjct: 480 GYNV-EENEGCLLLGWQTRPLIATSAW 505

>GBF_DICDI (P36417) G-box-binding factor (GBF)|
          Length = 708

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = -2

Query: 370 SLLEMVSCVPAPLVDARRCWPVHARRGWATRWRMTMT-ARCGLVGRAPHSTPSRRGRVAP 194
           SL   VSC P PL      W    +R +    +   T    GL   +  S+P ++  + P
Sbjct: 473 SLSTSVSCPPCPLCRGISSWKHDKKRYFCKECKKPFTPVGAGLSPSSSPSSPKKKSNITP 532

Query: 193 RTTHDLNQVS 164
            TT   +  S
Sbjct: 533 ITTSSTSSSS 542

>GAIPB_CUCMA (Q6EI05) DELLA protein GAIP-B (Gibberellic acid-insensitive phloem|
           protein B) (GAIP-B) (CmGAIP-B)
          Length = 587

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 296 AGLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           +G GY V ++++G++ LGW   PL   S W
Sbjct: 548 SGEGYRV-EENNGSLTLGWHTRPLIVTSAW 576

>GAI1_VITVI (Q8S4W7) DELLA protein GAI1 (Gibberellic acid-insensitive mutant|
           protein 1) (VvGAI1)
          Length = 590

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V ++++G + LGW   PL A S W
Sbjct: 547 GDGYRV-EENNGCLMLGWHTRPLIATSAW 574

>SLN1_HORVU (Q8W127) DELLA protein SLN1 (Slender protein 1)|
          Length = 618

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V ++ +G + LGW   PL A S W
Sbjct: 586 GDGYKV-EEKEGCLTLGWHTRPLIATSAW 613

>RHT1_WHEAT (Q9ST59) DELLA protein RHT-1 (Reduced height protein 1) (Protein|
           Rht-B1/Rht-D1)
          Length = 623

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V ++ +G + LGW   PL A S W
Sbjct: 591 GDGYKV-EEKEGCLTLGWHTRPLIATSAW 618

>RGA_ARATH (Q9SLH3) DELLA protein RGA (Repressor on the ga1-3 mutant)|
           (GAI-related sequence) (Restoration of growth on ammonia
           protein 1)
          Length = 587

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 296 AGLGYTVADDHDGTVRLGWKGTPLYAVSTWTCCT 195
           +G GY V ++ +G + LGW   PL   S W   T
Sbjct: 552 SGQGYRV-EESNGCLMLGWHTRPLITTSAWKLST 584

>CIGR2_ORYSA (Q8GVE1) Chitin-inducible gibberellin-responsive protein 2|
          Length = 544

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/61 (24%), Positives = 19/61 (31%)
 Frame = -1

Query: 389 FGSWQAELXXXXXXXXXXXXXXXXXXXXACPAGLGYTVADDHDGTVRLGWKGTPLYAVST 210
           FG W+A L                       +        + DG + LGWK  PL   S 
Sbjct: 483 FGKWKARLTMAGFRPSPLSSLVNATIRTLLQSYSDNYKLAERDGALYLGWKSRPLVVSSA 542

Query: 209 W 207
           W
Sbjct: 543 W 543

>GAG_SIVG1 (Q02843) Gag polyprotein [Contains: Core protein p17; Core protein|
           p24; Core protein p15]
          Length = 513

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 125 CSKVISVLTDLAPIGIATVRTNNYNCCCCFCM 30
           C K+I VLT L P G   ++     CC  +C+
Sbjct: 57  CQKIIEVLTPLEPTGSEGLKALFNLCCVIWCI 88

>SLR1_ORYSA (Q7G7J6) DELLA protein SLR1 (Protein SLENDER RICE1) (Gibberellic|
           acid-insensitive mutant protein) (OsGAI)
          Length = 625

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTW 207
           G GY V ++ +G + LGW   PL A S W
Sbjct: 593 GDGYRV-EEKEGCLTLGWHTRPLIATSAW 620

>GLGB_YERPS (Q664I2) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 727

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 299 PAGLGYTVADDHDGTV----RLGWKGTPLYAVSTWTCCTTHHAR 180
           PAG  + V DDH+ +V    R   +G  L A+S +T    +H R
Sbjct: 623 PAGFEWLVVDDHENSVFAFLRRDAEGHELIAISNFTPVPRYHYR 666

>GLGB_YERPE (Q8ZA75) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 727

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = -1

Query: 299 PAGLGYTVADDHDGTV----RLGWKGTPLYAVSTWTCCTTHHAR 180
           PAG  + V DDH+ +V    R   +G  L A+S +T    +H R
Sbjct: 623 PAGFEWLVVDDHENSVFAFLRRDAEGHELIAISNFTPVPRYHYR 666

>PTP1_NPVOP (O10274) Putative tyrosine-protein phosphatase 1 (EC 3.1.3.48)|
           (Protein-tyrosine phosphatase 1)
          Length = 220

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 188 GAWCNTSTSRRRRVGCPSNQA 250
           GAWC     RRR+V  PS +A
Sbjct: 21  GAWCTNGVRRRRQVHLPSVRA 41

>POL_HV2SB (P12451) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1461

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 125 CSKVISVLTDLAPIGIATVRTNNYNCCCCFCM 30
           C K+ISVL  L P G   +++     C  +C+
Sbjct: 56  CQKIISVLEPLVPTGSENLKSLYNTTCVIWCL 87

>RGA1_BRACM (Q5BN23) DELLA protein RGA1 (RGA-like protein 1) (BrRGA1)|
          Length = 573

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 293 GLGYTVADDHDGTVRLGWKGTPLYAVSTWTCCTTH 189
           G GY V ++++G + L W   PL   S W     H
Sbjct: 540 GEGYRV-EENNGCLMLSWHTRPLITTSAWKLSAVH 573

>CIGR1_ORYSA (Q69VG1) Chitin-inducible gibberellin-responsive protein 1|
          Length = 571

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 284 YTVADDHDGTVRLGWKGTPLYAVSTW 207
           YT+ D+ DG + LGW+   L + S W
Sbjct: 546 YTL-DEKDGAMLLGWRSRKLISASAW 570

>BFR_RHOCA (Q59738) Bacterioferritin (BFR)|
          Length = 161

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 246 WLEGHPTLRRLDVDVLHHAPRTTL 175
           +LEGHP L++LD   +   PR TL
Sbjct: 64  FLEGHPNLQKLDPLRIGEGPRETL 87

>GAG_HV2SB (P12450) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 519

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 125 CSKVISVLTDLAPIGIATVRTNNYNCCCCFCM 30
           C K+ISVL  L P G   +++     C  +C+
Sbjct: 56  CQKIISVLEPLVPTGSENLKSLYNTTCVIWCL 87

>YV02_HUMAN (Q99765) Protein DJ1104E15.3|
          Length = 158

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 156 SFSLTWLRSCVVRGATR 206
           S  LTWLR+C VRG  R
Sbjct: 30  SLGLTWLRTCSVRGFVR 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,146,666
Number of Sequences: 219361
Number of extensions: 991309
Number of successful extensions: 2897
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 2827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2896
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)