ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45d05 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 35.0 bits (79), Expect = 0.072 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Frame = -2 Query: 409 NIELMLD--GGRNWTLPGASSLVQVNNQTVCFAFVQMASSSSMPAALDSPAVILGGHQME 236 +++L++D G W + G +VQ C + + P A + LG Q+E Sbjct: 339 SVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVM---NGGMQPRA----EITLGARQLE 391 Query: 235 NNLLMFDLVKETFAFS 188 NL++FDL + FS Sbjct: 392 ENLVVFDLARSRVGFS 407
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 32.7 bits (73), Expect = 0.36 Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Frame = -2 Query: 409 NIELMLD--GGRNWTLPGASSLVQVNNQTVCFAFVQMASSSSMPAALDSPAVILGGHQME 236 +++L++D G W + G +VQ C + + P A V LG Q+E Sbjct: 345 SVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVM---NGGMQPRA----EVTLGTRQLE 397 Query: 235 NNLLMFDLVKETFAFS 188 L++FDL + FS Sbjct: 398 EKLMVFDLARSRVGFS 413
>INSL3_RAT (Q9WUK0) Insulin-like 3 precursor (Leydig insulin-like peptide)| (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like 3 B chain; Insulin-like 3 A chain] Length = 128 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 Query: 275 RLAGGDPRGAPDGEQPADVRSREGDVRVQWAAPRH 171 R+ GG PR +P+ QP D R RE +QW RH Sbjct: 39 RVCGG-PRWSPEATQPVDTRDRE---LLQWLEQRH 69
>GCSPB_SULTO (Q972C0) Probable glycine dehydrogenase [decarboxylating] subunit 2| (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) Length = 505 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = +2 Query: 59 SFHQKYWNENAAFAKPGRDTLLIRTPHGEVEVAAGSADAEEQPTERERLLHEIEHQQVVL 238 S+HQ WNE F G+ + + P E S + E+ +E L E+ +V+ Sbjct: 2 SWHQAVWNEPLIFEYKGKGRIGFKIPEEEELKKEISINIPEKLRRKEIDLPELSELEVIR 61 Query: 239 HLV 247 H + Sbjct: 62 HFI 64
>METK_MESCR (P93254) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 392 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 71 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 238 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 175 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 230 Query: 239 HLVP 250 HL P Sbjct: 231 HLNP 234
>METK_POPDE (P47916) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 395 Score = 29.6 bits (65), Expect = 3.0 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 71 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 238 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 176 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 231 Query: 239 HLVP 250 HL P Sbjct: 232 HLNP 235
>INSL3_MOUSE (O09107) Insulin-like 3 precursor (Leydig insulin-like peptide)| (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like 3 B chain; Insulin-like 3 A chain] Length = 122 Score = 29.6 bits (65), Expect = 3.0 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 275 RLAGGDPRGAPDGEQPADVRSREGDVRVQWAAPRH 171 R+ GG PR +P+ QP + R RE +QW RH Sbjct: 39 RVCGG-PRWSPEATQPVETRDRE---LLQWLEQRH 69
>C11BA_BACTJ (Q45730) Pesticidal crystal protein cry11Ba (Insecticidal| delta-endotoxin CryXIB(a)) (Crystaline entomocidal protoxin) (81 kDa crystal protein) Length = 724 Score = 29.3 bits (64), Expect = 3.9 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 259 ILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 80 +LGG +E N D + ++F F LGI T+ +N F++ S + W+ + V Sbjct: 576 LLGGIPVEGNSGWIDYITDSFTFDD--LGITTSSTNAFFSIDSDGVNASQQWYLSKLILV 633
>METL_DIACA (P24260) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 396 Score = 28.9 bits (63), Expect = 5.1 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +2 Query: 71 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 238 +Y+NEN A T+LI T H E E+AA + +P E+ L E + Sbjct: 179 EYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----NTIF 234 Query: 239 HLVP 250 HL P Sbjct: 235 HLNP 238
>Y138_METJA (Q57602) Hypothetical protein MJ0138| Length = 482 Score = 28.9 bits (63), Expect = 5.1 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -2 Query: 262 VILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNF 149 +I GG +E+ L DL KE F+G ++GI CS F Sbjct: 41 IIPGGSLIESKSLNDDLKKEIINFNGYIIGI---CSGF 75
>C11BB_BACTV (Q9ZIU5) Pesticidal crystal protein cry11Bb (Insecticidal| delta-endotoxin CryXIB(b)) (Crystaline entomocidal protoxin) (84 kDa crystal protein) Length = 750 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 259 ILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 80 +LGG +E N D + ++F F+ LGI T +N F++ S + W+ + V Sbjct: 576 LLGGIPVEGNSGWVDYITDSFTFND--LGITTASTNAFFSIDSDGVNASQQWYLSKLILV 633
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 28.9 bits (63), Expect = 5.1 Identities = 20/64 (31%), Positives = 31/64 (48%) Frame = -2 Query: 415 VANIELMLDGGRNWTLPGASSLVQVNNQTVCFAFVQMASSSSMPAALDSPAVILGGHQME 236 +ANI++M+D NN+ V +AFV+ S AL + L G Q+E Sbjct: 100 IANIKIMIDK---------------NNKNVNYAFVEYHQSHDANIALQT----LNGKQIE 140 Query: 235 NNLL 224 NN++ Sbjct: 141 NNIV 144
>METL_CATRO (Q96552) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 393 Score = 28.5 bits (62), Expect = 6.7 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +2 Query: 71 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 238 +Y+N+N A T+LI T H E E+AA + +P E+ L E + + Sbjct: 175 EYYNDNGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVVPEKYLDE----KTIF 230 Query: 239 HLVP 250 HL P Sbjct: 231 HLNP 234
>RRP3_ASHGO (Q75EW9) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 487 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 211 VKETFAFSGLLLGIRTTC 158 +KETF G L+G+RTTC Sbjct: 150 IKETFDSLGSLMGVRTTC 167
>RRP3_CANGA (Q6FNK8) ATP-dependent rRNA helicase RRP3 (EC 3.6.1.-)| Length = 493 Score = 28.1 bits (61), Expect = 8.8 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -2 Query: 211 VKETFAFSGLLLGIRTTC 158 +KETF G L+G+RTTC Sbjct: 157 IKETFDSLGSLMGVRTTC 174 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,912,357 Number of Sequences: 219361 Number of extensions: 928844 Number of successful extensions: 3549 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3463 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3549 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
