ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HXKB_YEAST (P04807) Hexokinase-2 (EC 2.7.1.1) (Hexokinase-B) (He... 31 1.6
2UBP26_HUMAN (Q9BXU7) Ubiquitin carboxyl-terminal hydrolase 26 (E... 28 8.1

>HXKB_YEAST (P04807) Hexokinase-2 (EC 2.7.1.1) (Hexokinase-B) (Hexokinase PII)|
          Length = 485

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 71  PLNQSKKNSDVKYTWAYTYTAPSIEQSDYYPRQLRR*TKRSI 196
           P +Q+K N  +   W   +  P+IE  D  P   ++ TKR+I
Sbjct: 159 PASQNKINEGILQRWTKGFDIPNIENHDVVPMLQKQITKRNI 200



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>UBP26_HUMAN (Q9BXU7) Ubiquitin carboxyl-terminal hydrolase 26 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 26)
           (Ubiquitin-specific-processing protease 26)
           (Deubiquitinating enzyme 26)
          Length = 913

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 8/42 (19%)
 Frame = +2

Query: 248 TRRTMIELVYRKRDARLVLFFS--------FSDVVQNLAMKS 349
           ++   IE V RK+  RLVL+F          SD +QN+ +KS
Sbjct: 22  SKEAFIEAVERKKKDRLVLYFKSGKYSTFRLSDNIQNVVLKS 63


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,344,489
Number of Sequences: 219361
Number of extensions: 918711
Number of successful extensions: 2206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2200
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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