ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbart45d03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017380.1| Zea mays clone EL01N0326D06.c mRNA sequence Length = 781 Score = 125 bits (63), Expect = 1e-25 Identities = 117/135 (86%) Strand = Plus / Minus Query: 186 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 |||||||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||| Sbjct: 505 cgggagcactcggcggggaagccctgcgggaatcgccagccgtcgtcgcagtagttgtag 446 Query: 246 tgcatgtagttcctcctggcccagtcgagggtgccgcgctcggcggcgctgggccggcgc 305 |||||||||||| |||||||||| ||| |||||| | |||||||||| | || |||| Sbjct: 445 tgcatgtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcgg 386 Query: 306 gtcatccagcggtcg 320 |||||||||||||| Sbjct: 385 ctcatccagcggtcg 371
>gb|AY106262.1| Zea mays PCO111648 mRNA sequence Length = 1257 Score = 125 bits (63), Expect = 1e-25 Identities = 117/135 (86%) Strand = Plus / Minus Query: 186 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 |||||||||||||||||||| |||| ||||| |||||||||||| ||||||||| |||| Sbjct: 983 cgggagcactcggcggggaagccctgcgggaagcgccagccgtcgtcgcagtagttgtag 924 Query: 246 tgcatgtagttcctcctggcccagtcgagggtgccgcgctcggcggcgctgggccggcgc 305 |||||||||||| |||||||||| ||| |||||| | |||||||||| | || |||| Sbjct: 923 tgcatgtagttctgcctggcccaggcgacggtgccccactcggcggcgtcgagctggcgg 864 Query: 306 gtcatccagcggtcg 320 |||||||||||||| Sbjct: 863 ctcatccagcggtcg 849
>emb|X93173.1|HVXETPM5 H.vulgare mRNA for xyloglucan endotransglycosylase-like protein (PM5) Length = 1188 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 186 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 |||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| Sbjct: 906 cgggagcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtag 847 Query: 246 tgcatgtagttcctcctggcccagtcgagggtgccg 281 |||||| || ||| ||||||| ||| ||||||| Sbjct: 846 gacatgtacttgctctcggcccaggcgacggtgccg 811
>ref|XM_507172.1| PREDICTED Oryza sativa (japonica cultivar-group), P0682A06.17 mRNA Length = 1127 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 190 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 249 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 905 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 846 Query: 250 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 290 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 845 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 805
>ref|XM_480868.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1111 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 190 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 249 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 910 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 851 Query: 250 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 290 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 850 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 810
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 190 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 249 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 8322676 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 8322617 Query: 250 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 290 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 8322616 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 8322576
>dbj|AB110604.1| Oryza sativa (japonica cultivar-group) OsXRT5 mRNA for xyloglucan endotransglycosylase-related protein 5, complete cds Length = 1280 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 190 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 249 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 901 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 842 Query: 250 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 290 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 841 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 801
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 190 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 249 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 62785 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 62726 Query: 250 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 290 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 62725 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 62685
>dbj|AK104451.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F05, full insert sequence Length = 1111 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 190 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 249 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 910 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 851 Query: 250 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 290 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 850 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 810
>dbj|AK060654.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H12, full insert sequence Length = 1127 Score = 89.7 bits (45), Expect = 6e-15 Identities = 87/101 (86%) Strand = Plus / Minus Query: 190 agcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgca 249 |||||||||||||||| |||| |||||| |||||||||||||||||||||| |||| || Sbjct: 905 agcactcggcggggaagccctgggggaagcgccagccgtcggcgcagtagttgtaggaca 846 Query: 250 tgtagttcctcctggcccagtcgagggtgccgcgctcggcg 290 ||||||| | | |||||| ||| ||||||| |||||||| Sbjct: 845 tgtagttgcgctcggcccacgcgacggtgccgagctcggcg 805
>gb|AY589587.1| Triticum aestivum endotransglucosylase/hydrolase XTH3 mRNA, complete cds Length = 938 Score = 87.7 bits (44), Expect = 2e-14 Identities = 83/96 (86%) Strand = Plus / Minus Query: 186 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 |||| ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| Sbjct: 894 cgggtgcactcggcggggaatccgttggggaagcgccagccgtcggtgcagtagtcgtag 835 Query: 246 tgcatgtagttcctcctggcccagtcgagggtgccg 281 |||||| || ||| ||||||| ||| ||||||| Sbjct: 834 gacatgtacttgctctcggcccaggcgacggtgccg 799
>gb|AY589586.1| Triticum aestivum endotransglucosylase/hydrolase XTH2 mRNA, complete cds Length = 1107 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 191 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgcat 250 ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| ||| Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831 Query: 251 gtagttcctcctggcccagtcgagggtgccg 281 ||| || ||| ||||||| ||| ||||||| Sbjct: 830 gtacttgctctcggcccaggcgacggtgccg 800
>gb|AY589585.1| Triticum aestivum endotransglucosylase/hydrolase XTH1 mRNA, complete cds Length = 958 Score = 85.7 bits (43), Expect = 1e-13 Identities = 79/91 (86%) Strand = Plus / Minus Query: 191 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtagtgcat 250 ||||||||||||||| || |||||||| ||||||||||||| ||||||||||||| ||| Sbjct: 890 gcactcggcggggaagccgttggggaagcgccagccgtcggtgcagtagtcgtaggacat 831 Query: 251 gtagttcctcctggcccagtcgagggtgccg 281 ||| || ||| ||||||| ||| ||||||| Sbjct: 830 gtacttgctctcggcccaggcgacggtgccg 800
>emb|AJ295944.1|FPR295944 Festuca pratensis mRNA for Xet2 protein Length = 1189 Score = 77.8 bits (39), Expect = 2e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 199 cggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 ||||||| |||||||||||||||||||||||||||||||||| |||| Sbjct: 886 cggggaatcccttggggaaccgccagccgtcggcgcagtagttgtag 840
>gb|AY589588.1| Triticum aestivum endotransglucosylase/hydrolase XTH4 mRNA, complete cds Length = 1100 Score = 75.8 bits (38), Expect = 9e-11 Identities = 50/54 (92%) Strand = Plus / Minus Query: 192 cactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 |||||| ||||||| ||||||||||||| |||||||||||||||||||| |||| Sbjct: 891 cactcgccggggaatcccttggggaacctccagccgtcggcgcagtagttgtag 838
>emb|X91660.1|HVPM2GENE H.vulgare mRNA for xyloglucan endotransglycosylase-like protein Length = 1110 Score = 69.9 bits (35), Expect = 6e-09 Identities = 50/55 (90%) Strand = Plus / Minus Query: 191 gcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 ||||||| ||||||| ||||||||||| ||||| |||||||||||||||| |||| Sbjct: 883 gcactcgccggggaagcccttggggaagcgccatccgtcggcgcagtagttgtag 829
>emb|AJ875021.1| Zea mays mRNA for xyloglucan endo-transglycosylase/hydrolase (xth1 gene), cultivated variety W64A Length = 1225 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 207 cccttggggaaccgccagccgtcggcgcagtagtcgtagtgcatgtagtt 256 |||| ||||||||||||||||||| ||||||||| |||| |||||||||| Sbjct: 911 ccctgggggaaccgccagccgtcgtcgcagtagttgtagcgcatgtagtt 862
>ref|XM_473788.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 822 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 188 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 244 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 813 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 757
>emb|AL606638.2|OSJN00077 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence Length = 166804 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 188 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 244 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 149764 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 149820
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Plus Query: 188 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 244 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 30516387 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 30516443
>dbj|AK070734.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023062B10, full insert sequence Length = 1109 Score = 50.1 bits (25), Expect = 0.005 Identities = 49/57 (85%) Strand = Plus / Minus Query: 188 ggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgta 244 ||||||||||| ||||| |||| ||||||||| || |||||||||||||||||| Sbjct: 903 ggagcactcgggcgggaagccctgcgggaaccgcttgctgtcggcgcagtagtcgta 847
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 48.1 bits (24), Expect = 0.021 Identities = 27/28 (96%) Strand = Plus / Minus Query: 269 gtcgagggtgccgcgctcggcggcgctg 296 ||||| |||||||||||||||||||||| Sbjct: 1784991 gtcgatggtgccgcgctcggcggcgctg 1784964
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.083 Identities = 29/31 (93%) Strand = Plus / Minus Query: 227 gtcggcgcagtagtcgtagtgcatgtagttc 257 ||||||||||||||||||| |||||||||| Sbjct: 28755537 gtcggcgcagtagtcgtaggccatgtagttc 28755507 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgtcggcgcagtagtcgtag 245 |||||||||||||||||||| Sbjct: 13233015 cgtcggcgcagtagtcgtag 13232996
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 46.1 bits (23), Expect = 0.083 Identities = 29/31 (93%) Strand = Plus / Minus Query: 227 gtcggcgcagtagtcgtagtgcatgtagttc 257 ||||||||||||||||||| |||||||||| Sbjct: 63312 gtcggcgcagtagtcgtaggccatgtagttc 63282
>dbj|AP003771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0622F03 Length = 170064 Score = 46.1 bits (23), Expect = 0.083 Identities = 29/31 (93%) Strand = Plus / Minus Query: 227 gtcggcgcagtagtcgtagtgcatgtagttc 257 ||||||||||||||||||| |||||||||| Sbjct: 156103 gtcggcgcagtagtcgtaggccatgtagttc 156073
>gb|BT017812.1| Zea mays clone EL01N0507B07.c mRNA sequence Length = 1156 Score = 42.1 bits (21), Expect = 1.3 Identities = 60/73 (82%) Strand = Plus / Minus Query: 186 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 |||| |||||| |||||||||||| ||||| ||||| ||||| ||||||||| ||| Sbjct: 806 cgggcgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgtac 747 Query: 246 tgcatgtagttcc 258 |||| | |||||| Sbjct: 746 tgcaagcagttcc 734
>emb|CT009637.4| Mouse DNA sequence from clone RP23-131G16 on chromosome 17, complete sequence Length = 222316 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 111 ggatggatcaatggatggctg 131 ||||||||||||||||||||| Sbjct: 198135 ggatggatcaatggatggctg 198155
>emb|CR391930.9| Zebrafish DNA sequence from clone CH211-154B16 in linkage group 15, complete sequence Length = 175972 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 tcattcacctttatttactat 35 ||||||||||||||||||||| Sbjct: 104519 tcattcacctttatttactat 104539
>gb|AC073761.4| Mus musculus chromosome 17 clone RP23-33K21, complete sequence Length = 206801 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 111 ggatggatcaatggatggctg 131 ||||||||||||||||||||| Sbjct: 44345 ggatggatcaatggatggctg 44325
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 288 gcggcgctgggccggcgcgtc 308 ||||||||||||||||||||| Sbjct: 3925726 gcggcgctgggccggcgcgtc 3925746
>gb|U72662.2|MEU72662 Methylobacterium extorquens methylotrophy region containing methylotrophic phosphoenolpyruvate carboxylase (ppcA), malyl-CoA lyase (mclA), orf1, orf2, putative ABC transporter subunit A (abcA), putative ABC transporter subunit B (abcB), putative ABC transporter ATP-binding subunit (abcC), methanol dehydrogenase large subunit homolog (mxaF'), cytochrome c (maxG'), mxaJ homolog (mxaJ'), 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase (folA), dihydroneopterin aldolase (folB), dihydroxypteroate synthase (folC), orf3, orf4, and PqqE (pqqE) genes, complete cds; and PqqC/D (pqqC/D) gene, partial cds Length = 17877 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 280 cgcgctcggcggcgctgggccggcg 304 |||||||||||||| |||||||||| Sbjct: 7236 cgcgctcggcggcgatgggccggcg 7212
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 270 tcgagggtgccgcgctcggcg 290 ||||||||||||||||||||| Sbjct: 1994160 tcgagggtgccgcgctcggcg 1994140
>gb|AY105107.1| Zea mays PCO140468 mRNA sequence Length = 1297 Score = 42.1 bits (21), Expect = 1.3 Identities = 60/73 (82%) Strand = Plus / Minus Query: 186 cgggagcactcggcggggaaccccttggggaaccgccagccgtcggcgcagtagtcgtag 245 |||| |||||| |||||||||||| ||||| ||||| ||||| ||||||||| ||| Sbjct: 970 cgggcgcactctccggggaacccctgcgggaagcgccacccgtcatcgcagtagttgtac 911 Query: 246 tgcatgtagttcc 258 |||| | |||||| Sbjct: 910 tgcaagcagttcc 898
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gccgcgctcggcggcgctgg 297 |||||||||||||||||||| Sbjct: 2850506 gccgcgctcggcggcgctgg 2850487
>gb|AC161008.4| Pan troglodytes BAC clone CH251-634F15 from chromosome 7, complete sequence Length = 208418 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gttcttgaagaattcattca 21 |||||||||||||||||||| Sbjct: 174802 gttcttgaagaattcattca 174783
>gb|AC147300.3| Pan troglodytes BAC clone RP43-56D24 from 7, complete sequence Length = 200924 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 gttcttgaagaattcattca 21 |||||||||||||||||||| Sbjct: 41735 gttcttgaagaattcattca 41754
>gb|AY210803.1| Aphonopelma hentzi 5.8S ribosomal RNA gene, complete sequence; and 28S ribosomal RNA gene, partial sequence Length = 4401 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggaaccgccagccgtcggcg 233 |||||||||||||||||||| Sbjct: 529 ggaaccgccagccgtcggcg 548
>gb|AC004015.1| Homo sapiens BAC clone CTA-333F24 from 7, complete sequence Length = 144239 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gttcttgaagaattcattca 21 |||||||||||||||||||| Sbjct: 48933 gttcttgaagaattcattca 48914
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 285 tcggcggcgctgggccggcgcgtc 308 ||||||||||||||||||| |||| Sbjct: 62532 tcggcggcgctgggccggcccgtc 62509
>gb|AC161936.2| Pan troglodytes BAC clone CH251-175C18 from chromosome 7, complete sequence Length = 159071 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 gttcttgaagaattcattca 21 |||||||||||||||||||| Sbjct: 88782 gttcttgaagaattcattca 88763
>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence Length = 133625 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 gatggatcaatggatggctg 131 |||||||||||||||||||| Sbjct: 118704 gatggatcaatggatggctg 118723
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgtcggcgcagtagtcgtag 245 |||||||||||||||||||| Sbjct: 150203 cgtcggcgcagtagtcgtag 150184
>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete sequence Length = 132427 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 agaattcattcacctttatt 29 |||||||||||||||||||| Sbjct: 43302 agaattcattcacctttatt 43321
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 285 tcggcggcgctgggccggcgcgtc 308 |||||||||| ||||||||||||| Sbjct: 131365 tcggcggcgcggggccggcgcgtc 131388
>dbj|AK063497.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-116-D06, full insert sequence Length = 1439 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 cgtcggcgcagtagtcgtag 245 |||||||||||||||||||| Sbjct: 1231 cgtcggcgcagtagtcgtag 1212 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,321,160 Number of Sequences: 3902068 Number of extensions: 2321160 Number of successful extensions: 50029 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49559 Number of HSP's gapped (non-prelim): 470 length of query: 385 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 363 effective length of database: 17,147,199,772 effective search space: 6224433517236 effective search space used: 6224433517236 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
