ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1) 29 2.8
2Y2066_MYCLE (O32912) Hypothetical protein ML2066 28 8.1

>KPC1_CANAL (P43057) Protein kinase C-like 1 (EC 2.7.11.13) (PKC 1)|
          Length = 1097

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 159 IPCHYQIITQN-TTWCCYCIL*IRWEMDRVRNKVLCCIVLSH 37
           IP  ++ IT + T WCC+C   + W    VR K   C V+ H
Sbjct: 479 IPHRFEPITNHGTKWCCHCGYILPWGKKNVR-KCTECGVMCH 519



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>Y2066_MYCLE (O32912) Hypothetical protein ML2066|
          Length = 478

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 15/47 (31%)
 Frame = -1

Query: 191 LQEIVSYRKSPSLVI---------------TRLLHRTPHGVAIVSYE 96
           +Q+ V + KS  LVI               T L+H+  HGVA+V++E
Sbjct: 82  VQQAVEFVKSRDLVIDTPVLLTPNDSVSDATTLIHKRAHGVAVVAFE 128


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,176,645
Number of Sequences: 219361
Number of extensions: 766804
Number of successful extensions: 1432
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1432
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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