ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009287.1| Triticum aestivum clone wlm0.pk0014.b1:fis, full ... 529 e-147
2gb|BT009096.1| Triticum aestivum clone wkm2c.pk005.g2:fis, full ... 486 e-134
3gb|AY107597.1| Zea mays PCO071961 mRNA sequence 208 1e-50
4ref|XM_483751.1| Oryza sativa (japonica cultivar-group), mRNA 200 3e-48
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
6dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
7dbj|AK102459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
8dbj|AK059351.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
9dbj|AB026731.1| Oryza sativa (japonica cultivar-group) mRNA for ... 117 3e-23
10dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
11dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
12dbj|AK071558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
13dbj|D85764.1| Oryza sativa (japonica cultivar-group) mRNA for cy... 72 2e-09
14gb|DQ175833.1| Hordeum vulgare clone DsB33 Ds insertion site fla... 68 2e-08
15gb|AY103967.1| Zea mays PCO066827 mRNA sequence 64 4e-07
16emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete ... 44 0.36
17dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.36
18gb|AY969674.1| Uncultured basidiomycete isolate dfmo0690_245 18S... 42 1.4
19gb|AY969639.1| Uncultured basidiomycete isolate dfmo0690_209 18S... 42 1.4
20gb|AY562376.1| Parma microlepis clone PM2H16 microsatellite sequ... 42 1.4
21gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 o... 42 1.4
22dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 42 1.4
23dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 1.4
24gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.4
25gb|AE017221.1| Thermus thermophilus HB27, complete genome 42 1.4
26dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 1.4
27emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chr... 42 1.4
28gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome 40 5.6
29gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete... 40 5.6
30gb|CP000114.1| Streptococcus agalactiae A909, complete genome 40 5.6
31gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 5.6
32emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on ch... 40 5.6
33gb|AE014241.1| Streptococcus agalactiae 2603V/R section 51 of 10... 40 5.6
34emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.6
35emb|BX640431.1| Bordetella parapertussis strain 12822, complete ... 40 5.6
36emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 40 5.6
37gb|AC015855.13| Homo sapiens chromosome , clone CTC-480C19, comp... 40 5.6
38gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.6
39dbj|AB096202.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, U... 40 5.6
40dbj|AB096201.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, U... 40 5.6
41gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome 40 5.6 
>gb|BT009287.1| Triticum aestivum clone wlm0.pk0014.b1:fis, full insert mRNA sequence
          Length = 1486

 Score =  529 bits (267), Expect = e-147
 Identities = 362/393 (92%), Gaps = 11/393 (2%)
 Strand = Plus / Minus

                                                                        
Query: 30   ctaaatttattgaaatcctgccacagtggtcacagcaacaccatcaaactccaaaaggnn 89
            |||||||||||  ||| ||| || |||||||||||||||||||||||||||||||| |  
Sbjct: 1425 ctaaatttattcgaattctgtcatagtggtcacagcaacaccatcaaactccaaaatgaa 1366

                                                                        
Query: 90   nnnnngaaatcgaatcacgtttctgagctaggaacta--ggaagcatcggcaggggaggg 147
                  ||||||||||||  |||||||||||||||||  |||||||||||||||||||||
Sbjct: 1365 ------aaatcgaatcacacttctgagctaggaactataggaagcatcggcaggggaggg 1312

                                                                        
Query: 148  acaaacacaagatttacacgcgtagatagataatagaggaatcttcagatctttgtggcg 207
            |||||||||| ||| |||||||| || |||||   |||||||||||||||||| ||||||
Sbjct: 1311 acaaacacaacattaacacgcgtcgacagata---gaggaatcttcagatcttggtggcg 1255

                                                                        
Query: 208  aaatcaaggccttccttggcgagcgcctccacgtcggccaccggcggctgggccctggcg 267
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 aaatcaaggccttccttgccgagcgcctccacgtcggccaccggcggctgggccctggcg 1195

                                                                        
Query: 268  accttggcgatggcctgattctcgtcggcggagccgccctctaggaacacgccgatgacc 327
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1194 accttggcgatggcctgattctcgtcggcggagccgccctctaggaacacaccgatgacc 1135

                                                                        
Query: 328  ttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttgtcc 387
            |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 1134 ttgccgtccttgacccagtaggtgccgaacttgggcttggccaccgctgggtcgttgtcc 1075

                                             
Query: 388  ccgaacagcaccgtctcgccaacgttgtcgccg 420
            |||||||||||||||||||||||||| ||||||
Sbjct: 1074 ccgaacagcaccgtctcgccaacgttctcgccg 1042
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>gb|BT009096.1| Triticum aestivum clone wkm2c.pk005.g2:fis, full insert mRNA
           sequence
          Length = 933

 Score =  486 bits (245), Expect = e-134
 Identities = 284/295 (96%), Gaps = 4/295 (1%)
 Strand = Plus / Minus

                                                                       
Query: 126 aggaagcatcggcaggggagggacaaacacaagatttacacgcgtagatagataatagag 185
           ||||||||||||||||| |||||||||||||| |||||||||||| ||||||||   |||
Sbjct: 789 aggaagcatcggcaggg-agggacaaacacaaaatttacacgcgtcgatagata---gag 734

                                                                       
Query: 186 gaatcttcagatctttgtggcgaaatcaaggccttccttggcgagcgcctccacgtcggc 245
           ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 733 gaatcttcagatcttggtggcgaaatcaaggccttccttgccgagcgcctccacgtcgtc 674

                                                                       
Query: 246 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caccggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgcc 614

                                                                       
Query: 306 ctctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 365
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctctaggaacacaccgatgaccttgccgtccttgacccagtaggtgccgaacttgggctt 554

                                                                  
Query: 366 ggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccg 420
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggccgccgctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccg 499



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/95 (84%), Gaps = 6/95 (6%)
 Strand = Plus / Minus

                                                                       
Query: 32  aaatttattgaaatcctgccacagtggtcacagcaacaccatcaaactccaaaaggnnnn 91
           |||||||||  ||| |||||| |||||||||||||||||||||||||||||||| |    
Sbjct: 908 aaatttattcgaattctgccatagtggtcacagcaacaccatcaaactccaaaatgaa-- 851

                                              
Query: 92  nnngaaatcgaatcacgtttctgagctaggaacta 126
               ||||||||||||  |||||||||||||||||
Sbjct: 850 ----aaatcgaatcacacttctgagctaggaacta 820
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>gb|AY107597.1| Zea mays PCO071961 mRNA sequence
          Length = 1745

 Score =  208 bits (105), Expect = 1e-50
 Identities = 173/193 (89%), Gaps = 2/193 (1%)
 Strand = Plus / Minus

                                                                        
Query: 229  agcgcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattc 288
            |||||||  |||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct: 1478 agcgcctggacgtcggccaccggcggctgcgccctggcgaccctggcgatggcctggttc 1419

                                                                        
Query: 289  tcgtcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtag 348
            || ||||| || |||||||| || |||||||||| ||||||||||||||| |||||||||
Sbjct: 1418 tcctcggccgacccgccctcgagaaacacgccgacgaccttgccgtccttcacccagtag 1359

                                                                        
Query: 349  gtgccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtc-tcgcc 407
             |||||||||||||||||||||  || ||||||||||| |||||||||| |||| |||||
Sbjct: 1358 ctgccgaacttgggcttggccgaggccgggtcgttgtcgccgaacagca-cgtcgtcgcc 1300

                         
Query: 408  aacgttgtcgccg 420
             ||||||||||||
Sbjct: 1299 gacgttgtcgccg 1287
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>ref|XM_483751.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1721

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 291
            ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306

                                                                        
Query: 292  tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 351
            || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246

                                                                        
Query: 352  ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 411
            |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186

                     
Query: 412  ttgtcgccg 420
            |||||||||
Sbjct: 1185 ttgtcgccg 1177
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                            
Query: 232      gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 291
                ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 27895523 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 27895464

                                                                            
Query: 292      tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 351
                || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 27895463 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 27895404

                                                                            
Query: 352      ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 411
                |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 27895403 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 27895344

                         
Query: 412      ttgtcgccg 420
                |||||||||
Sbjct: 27895343 ttgtcgccg 27895335
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>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1150_A11
          Length = 142010

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                          
Query: 232    gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 291
              ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 103601 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 103542

                                                                          
Query: 292    tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 351
              || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 103541 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 103482

                                                                          
Query: 352    ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 411
              |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 103481 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 103422

                       
Query: 412    ttgtcgccg 420
              |||||||||
Sbjct: 103421 ttgtcgccg 103413
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>dbj|AK102459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094C01, full
            insert sequence
          Length = 1720

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                        
Query: 232  gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 291
            ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 1365 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 1306

                                                                        
Query: 292  tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 351
            || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 1305 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 1246

                                                                        
Query: 352  ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 411
            |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 1245 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 1186

                     
Query: 412  ttgtcgccg 420
            |||||||||
Sbjct: 1185 ttgtcgccg 1177
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>dbj|AK059351.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C10, full
           insert sequence
          Length = 694

 Score =  200 bits (101), Expect = 3e-48
 Identities = 167/189 (88%)
 Strand = Plus / Minus

                                                                       
Query: 232 gcctccacgtcggccaccggcggctgggccctggcgaccttggcgatggcctgattctcg 291
           ||||| |||||||||||||||||||| || |||||||||||||| ||| |||||||||| 
Sbjct: 338 gcctcgacgtcggccaccggcggctgagctctggcgaccttggcaatgacctgattctcc 279

                                                                       
Query: 292 tcggcggagccgccctctaggaacacgccgatgaccttgccgtccttgacccagtaggtg 351
           || || ||||||||||| ||||| ||||||| ||||||||||||||||| |||||| | |
Sbjct: 278 tccgccgagccgccctcgaggaagacgccgacgaccttgccgtccttgatccagtacgag 219

                                                                       
Query: 352 ccgaacttgggcttggccgcagctgggtcgttgtccccgaacagcaccgtctcgccaacg 411
           |||||||||||||||||||| |  ||||||||||| |||||||||||   |||||| |||
Sbjct: 218 ccgaacttgggcttggccgccgtggggtcgttgtcgccgaacagcacatcctcgccgacg 159

                    
Query: 412 ttgtcgccg 420
           |||||||||
Sbjct: 158 ttgtcgccg 150
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>dbj|AB026731.1| Oryza sativa (japonica cultivar-group) mRNA for monodehydroascorbate
            reductase, partial cds
          Length = 1339

 Score =  117 bits (59), Expect = 3e-23
 Identities = 98/111 (88%)
 Strand = Plus / Minus

                                                                        
Query: 310  aggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttggcc 369
            ||||| ||||||| ||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct: 1335 aggaagacgccgacgaccttgccgtccttgatccagtacgagccgaacttgggcttggcc 1276

                                                               
Query: 370  gcagctgggtcgttgtccccgaacagcaccgtctcgccaacgttgtcgccg 420
            || |  ||||||||||| |||||||||||   |||||| ||||||||||||
Sbjct: 1275 gccgtggggtcgttgtcgccgaacagcacatcctcgccgacgttgtcgccg 1225
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                            
Query: 325      accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 384
                |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 22346963 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 22346904

                                                    
Query: 385      tccccgaacagcaccgtctcgccaacgttgtcgccg 420
                || |||||||| |  || ||||||||||||||||||
Sbjct: 22346903 tctccgaacaggatggtgtcgccaacgttgtcgccg 22346868
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>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1155_H10
          Length = 140475

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                          
Query: 325    accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 384
              |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 108971 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 108912

                                                  
Query: 385    tccccgaacagcaccgtctcgccaacgttgtcgccg 420
              || |||||||| |  || ||||||||||||||||||
Sbjct: 108911 tctccgaacaggatggtgtcgccaacgttgtcgccg 108876
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>dbj|AK071558.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100J06, full
            insert sequence
          Length = 1668

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 325  accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 384
            |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 1394 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1335

                                                
Query: 385  tccccgaacagcaccgtctcgccaacgttgtcgccg 420
            || |||||||| |  || ||||||||||||||||||
Sbjct: 1334 tctccgaacaggatggtgtcgccaacgttgtcgccg 1299
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>dbj|D85764.1| Oryza sativa (japonica cultivar-group) mRNA for cytosolic
            monodehydroascorbate reductase, complete cds
          Length = 1570

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 325  accttgccgtccttgacccagtaggtgccgaacttgggcttggccgcagctgggtcgttg 384
            |||||||||||||||| ||||||||  ||||||||||||||||| |  |  |||||  ||
Sbjct: 1272 accttgccgtccttgatccagtaggacccgaacttgggcttggcagaggtcgggtcactg 1213

                                                
Query: 385  tccccgaacagcaccgtctcgccaacgttgtcgccg 420
            || |||||||| |  || ||||||||||||||||||
Sbjct: 1212 tctccgaacaggatggtgtcgccaacgttgtcgccg 1177
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>gb|DQ175833.1| Hordeum vulgare clone DsB33 Ds insertion site flanking region
           genomic sequence
          Length = 887

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 82/98 (83%)
 Strand = Plus / Minus

                                                                       
Query: 250 ggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccctct 309
           ||||||||| |||| |||| ||||||||||||    |||||||| |  || |||||||| 
Sbjct: 654 ggcggctggtccctcgcgagcttggcgatggcgccgttctcgtccggcgacccgccctcc 595

                                                 
Query: 310 aggaacacgccgatgaccttgccgtccttgacccagta 347
           ||||||||||| | |  |||||||||||||||||||||
Sbjct: 594 aggaacacgcccacgcacttgccgtccttgacccagta 557
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>gb|AY103967.1| Zea mays PCO066827 mRNA sequence
          Length = 1675

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 98/120 (81%)
 Strand = Plus / Minus

                                                                        
Query: 247  accggcggctgggccctggcgaccttggcgatggcctgattctcgtcggcggagccgccc 306
            |||||||||||||   | || |||||||| ||| |||  |||||||| |  || ||||||
Sbjct: 1386 accggcggctgggttttcgccaccttggcaatgaccttgttctcgtccggtgacccgccc 1327

                                                                        
Query: 307  tctaggaacacgccgatgaccttgccgtccttgacccagtaggtgccgaacttgggcttg 366
            || |||||  |||| | ||||||||||||||| | |||||| | ||||||||||||||||
Sbjct: 1326 tccaggaaggcgcccaagaccttgccgtccttaatccagtacgagccgaacttgggcttg 1267
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>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29
          Length = 300100

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 221    ccttggcgagcgcctccacgtcggcc 246
              ||||||||| ||||||||||||||||
Sbjct: 292100 ccttggcgaccgcctccacgtcggcc 292075
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 315     cacgccgatgaccttgccgtccttga 340
               ||||||| ||||||||||||||||||
Sbjct: 2805150 cacgccggtgaccttgccgtccttga 2805125



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 323     tgaccttgccgtccttgacc 342
               ||||||||||||||||||||
Sbjct: 4337179 tgaccttgccgtccttgacc 4337198
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>gb|AY969674.1| Uncultured basidiomycete isolate dfmo0690_245 18S ribosomal RNA
           gene, partial sequence; internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence; and 28S ribosomal RNA gene,
           partial sequence
          Length = 596

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 62  cagcaacaccatcaaactccaaaag 86
           |||||||||| ||||||||||||||
Sbjct: 419 cagcaacaccctcaaactccaaaag 395
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>gb|AY969639.1| Uncultured basidiomycete isolate dfmo0690_209 18S ribosomal RNA
           gene, partial sequence; internal transcribed spacer 1,
           5.8S ribosomal RNA gene, and internal transcribed spacer
           2, complete sequence; and 28S ribosomal RNA gene,
           partial sequence
          Length = 596

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 62  cagcaacaccatcaaactccaaaag 86
           |||||||||| ||||||||||||||
Sbjct: 419 cagcaacaccctcaaactccaaaag 395
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>gb|AY562376.1| Parma microlepis clone PM2H16 microsatellite sequence
          Length = 537

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 138 caggggagggacaaacacaag 158
           |||||||||||||||||||||
Sbjct: 194 caggggagggacaaacacaag 214
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>gb|AE004674.1| Pseudomonas aeruginosa PAO1, section 235 of 529 of the complete
            genome
          Length = 11021

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 242  cggccaccggcggctgggccctggcgacc 270
            |||||||||||||||||||| || |||||
Sbjct: 9935 cggccaccggcggctgggccatgccgacc 9963
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 255    ctgggccctggcgaccttggcgatggcct 283
              ||||||| |||| ||||||||||||||||
Sbjct: 792531 ctgggccttggccaccttggcgatggcct 792559
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 318     gccgatgaccttgccgtcctt 338
               |||||||||||||||||||||
Sbjct: 2512009 gccgatgaccttgccgtcctt 2512029
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 340    acccagtaggtgccgaacttg 360
              |||||||||||||||||||||
Sbjct: 464124 acccagtaggtgccgaacttg 464144
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 255    ctgggccctggcgaccttggcgatggcct 283
              ||||||| |||| ||||||||||||||||
Sbjct: 463611 ctgggccttggccaccttggcgatggcct 463639
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 315    cacgccgatgaccttgccgtc 335
              |||||||||||||||||||||
Sbjct: 532004 cacgccgatgaccttgccgtc 532024
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>emb|AL831781.8| Mouse DNA sequence from clone RP23-307O24 on chromosome 2, complete
              sequence
          Length = 140953

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    ggcaggggagggacaaacaca 156
              |||||||||||||||||||||
Sbjct: 127280 ggcaggggagggacaaacaca 127260
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>gb|AY714813.1| Cercopithecine herpesvirus 2, complete genome
          Length = 150715

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 235    tccacgtcggccaccggcgg 254
              ||||||||||||||||||||
Sbjct: 134504 tccacgtcggccaccggcgg 134485
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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 66      aacaccatcaaactccaaaa 85
               ||||||||||||||||||||
Sbjct: 2115717 aacaccatcaaactccaaaa 2115698
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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       gttttaaaattcttgcgaat 20
               ||||||||||||||||||||
Sbjct: 1144998 gttttaaaattcttgcgaat 1144979
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 61      acagcaacaccatcaaactc 80
               ||||||||||||||||||||
Sbjct: 6210867 acagcaacaccatcaaactc 6210848
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>emb|AL672043.15| Human DNA sequence from clone RP11-322N21 on chromosome 1 Contains a
             novel gene, the gene for  tetraspan 1 (TSPAN-1), gene
             FLJ20277 (FLJ31624) and the gene for a novel protein
             (FLJ25163), complete sequence
          Length = 87234

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ctgggccctggcgaccttgg 274
             ||||||||||||||||||||
Sbjct: 22909 ctgggccctggcgaccttgg 22928
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>gb|AE014241.1| Streptococcus agalactiae 2603V/R section 51 of 100 of the complete
             genome
          Length = 21827

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     gttttaaaattcttgcgaat 20
             ||||||||||||||||||||
Sbjct: 11922 gttttaaaattcttgcgaat 11903
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>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16
          Length = 348706

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    caccggcggctgggccctgg 265
              ||||||||||||||||||||
Sbjct: 268675 caccggcggctgggccctgg 268694
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>emb|BX640431.1| Bordetella parapertussis strain 12822, complete genome; segment 9/14
          Length = 347894

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 246    caccggcggctgggccctgg 265
              ||||||||||||||||||||
Sbjct: 340349 caccggcggctgggccctgg 340368
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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      gttttaaaattcttgcgaat 20
              ||||||||||||||||||||
Sbjct: 207300 gttttaaaattcttgcgaat 207281
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>gb|AC015855.13| Homo sapiens chromosome , clone CTC-480C19, complete sequence
          Length = 96963

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   gctgggccctggcgaccttg 273
             ||||||||||||||||||||
Sbjct: 84619 gctgggccctggcgaccttg 84600
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 323     tgaccttgccgtccttgacc 342
               ||||||||||||||||||||
Sbjct: 3687086 tgaccttgccgtccttgacc 3687067
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>dbj|AB096202.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for
            tegument protein, integral membrane protein, major capsid
            protein, capsid protein, DNA packaging protein, partial
            and complete cds, genotypes: BVlt
          Length = 7985

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 225  ggcgagcgcctccacgtcggccac 248
            ||||||||||||||||| ||||||
Sbjct: 4291 ggcgagcgcctccacgtgggccac 4268
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>dbj|AB096201.1| Cercopithecine herpesvirus 1 UL21, UL20, UL19, UL18, UL15 genes for
            tegument protein, integral membrane protein, major capsid
            protein, capsid protein, DNA packaging protein, partial
            and complete cds, genotypes: BVpt
          Length = 7910

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 225  ggcgagcgcctccacgtcggccac 248
            ||||||||||||||||| ||||||
Sbjct: 4299 ggcgagcgcctccacgtgggccac 4276
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>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome
          Length = 2256640

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    cgatgaccttgccgtccttg 339
              ||||||||||||||||||||
Sbjct: 420412 cgatgaccttgccgtccttg 420431


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,045,255
Number of Sequences: 3902068
Number of extensions: 3045255
Number of successful extensions: 65967
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65326
Number of HSP's gapped (non-prelim): 631
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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