Clone Name | rbart45c08 |
---|---|
Clone Library Name | barley_pub |
>gb|AF029857.1|AF029857 Sorghum bicolor cytochrome P450 CYP99A1 (CYP99A1) mRNA, partial cds Length = 1689 Score = 81.8 bits (41), Expect = 2e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 365 gggaggctccaatcaaagtagtagaggagtcgtgccaccatgagctgaagcgtggccagc 424 |||||||||||||||||||||||||| || ||||| |||||||||| |||| ||| ||| Sbjct: 1436 gggaggctccaatcaaagtagtagagcagccgtgcaaccatgagctccagcgcggcgagc 1377 Query: 425 ccaaaggtatcgccggggcacttcctcct 453 |||||||| | || |||||| ||||||| Sbjct: 1376 ccaaaggtgtttccagggcacatcctcct 1348
>ref|XM_474673.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1524 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 357 ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410 |||| ||||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 1414 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 1361
>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16, complete sequence Length = 155702 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 357 ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410 |||| ||||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 151921 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 151868
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 357 ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410 |||| ||||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 5451272 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 5451219
>dbj|AK071546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100C12, full insert sequence Length = 1750 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 357 ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410 |||| ||||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 1478 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 1425
>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01, complete sequence Length = 150283 Score = 67.9 bits (34), Expect = 3e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 357 ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410 |||| ||||||||||||||||| ||||||||||| || |||||||| ||||||| Sbjct: 5902 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 5849
>gb|AF321864.1|AF321864 Lolium rigidum clone Lol-5-v putative cytochrome P450 mRNA, complete cds Length = 1757 Score = 61.9 bits (31), Expect = 2e-06 Identities = 73/87 (83%) Strand = Plus / Minus Query: 370 gctccaatcaaagtagtagaggagtcgtgccaccatgagctgaagcgtggccagcccaaa 429 |||||| ||||| ||||| || ||||||||||||||||||| | |||||| || |||| Sbjct: 1431 gctccattcaaaatagtacagaagtcgtgccaccatgagctccaacgtggctagtgcaaa 1372 Query: 430 ggtatcgccggggcacttcctcctccc 456 | ||| ||||||||| |||||||||| Sbjct: 1371 gccatcaccggggcacatcctcctccc 1345
>ref|XM_464360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Minus Query: 359 ccagcagggaggctccaatcaaagtagtagag 390 |||||||||||||||||||| |||| |||||| Sbjct: 1445 ccagcagggaggctccaatcgaagtggtagag 1414
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 359 ccagcagggaggctccaatcaaagtagtagag 390 |||||||||||||||||||| |||| |||||| Sbjct: 4724431 ccagcagggaggctccaatcgaagtggtagag 4724462
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 359 ccagcagggaggctccaatcaaagtagtagag 390 |||||||||||||||||||| |||| |||||| Sbjct: 5021 ccagcagggaggctccaatcgaagtggtagag 5052
>emb|AL138962.16| Human DNA sequence from clone RP11-279N8 on chromosome 13 Contains two novel genes, complete sequence Length = 124518 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 ctccactgtgaatttatttttg 214 |||||||||||||||||||||| Sbjct: 79000 ctccactgtgaatttatttttg 79021
>gb|AC134729.2| Homo sapiens 3 BAC RP11-671L3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 155733 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 199 tgtgaatttatttttgtgtaca 220 |||||||||||||||||||||| Sbjct: 128603 tgtgaatttatttttgtgtaca 128582
>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 199945 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 246 taatagtatttatctgctatca 267 |||||||||||||||||||||| Sbjct: 192364 taatagtatttatctgctatca 192385
>gb|DQ094188.2| Toxoplasma gondii ATP-binding cassette protein subfamily B member 1 (ABC.B1) gene, complete cds Length = 24600 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 agaaaagaagaagagaagcac 240 ||||||||||||||||||||| Sbjct: 17254 agaaaagaagaagagaagcac 17234
>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14, complete sequence Length = 262038 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 201 tgaatttatttttgtgtacagaaaa 225 |||| |||||||||||||||||||| Sbjct: 162244 tgaaattatttttgtgtacagaaaa 162268
>gb|AC022024.7| Homo sapiens chromosome 10 clone RP11-432B10, complete sequence Length = 168862 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 agcccttggctaaaagtttct 22 ||||||||||||||||||||| Sbjct: 85394 agcccttggctaaaagtttct 85374
>emb|BX005309.14| Zebrafish DNA sequence from clone CH211-265M20 in linkage group 10, complete sequence Length = 179240 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 gtgtgtgtttgtctattctga 47 ||||||||||||||||||||| Sbjct: 82290 gtgtgtgtttgtctattctga 82270
>emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in linkage group 10, complete sequence Length = 156486 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 27 gtgtgtgtttgtctattctga 47 ||||||||||||||||||||| Sbjct: 105582 gtgtgtgtttgtctattctga 105562
>gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, complete sequence Length = 174529 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 tacagaaaagaagaagagaag 237 ||||||||||||||||||||| Sbjct: 39611 tacagaaaagaagaagagaag 39591
>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence Length = 211664 Score = 40.1 bits (20), Expect = 6.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 45 tgatgtgattgatccatgtacaagtttcaaca 76 ||||||||||||||| || || |||||||||| Sbjct: 119206 tgatgtgattgatccgtggacgagtttcaaca 119175
>gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, complete sequence Length = 182311 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tacagaaaagaagaagagaa 236 |||||||||||||||||||| Sbjct: 47294 tacagaaaagaagaagagaa 47275
>ref|XM_609087.2| PREDICTED: Bos taurus similar to Ryanodine receptor 3 (Brain-type ryanodine receptor) (RyR3) (RYR-3) (Brain ryanodine receptor-calcium release channel) (LOC530612), partial mRNA Length = 4492 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 359 ccagcagggaggctccaatcaaag 382 |||||||||||||||| ||||||| Sbjct: 3190 ccagcagggaggctcccatcaaag 3213
>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete sequence Length = 175745 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 tttgtgtacagaaaagaagaagag 234 ||||||||| |||||||||||||| Sbjct: 56888 tttgtgtactgaaaagaagaagag 56911
>gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence Length = 140345 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gcagttggttcttcctcctc 316 |||||||||||||||||||| Sbjct: 70666 gcagttggttcttcctcctc 70685
>gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, complete sequence Length = 146338 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 tacagaaaagaagaagagaa 236 |||||||||||||||||||| Sbjct: 107773 tacagaaaagaagaagagaa 107754
>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5' end of the Car10 gene for carbonic anhydrase 10 and one CpG island, complete sequence Length = 203449 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 ttttgtgtacagaaaagaag 229 |||||||||||||||||||| Sbjct: 157847 ttttgtgtacagaaaagaag 157866
>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence Length = 197483 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 190 caactccactgtgaatttattttt 213 |||| ||||||||||||||||||| Sbjct: 37848 caacaccactgtgaatttattttt 37871
>gb|AC164624.3| Mus musculus 10 BAC RP24-324P5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 199853 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaaagaagaagagaagca 239 |||||||||||||||||||| Sbjct: 19859 agaaaagaagaagagaagca 19840
>ref|XM_682489.1| PREDICTED: Danio rerio similar to homer homolog 3 (LOC559173), partial mRNA Length = 660 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 gtcgagctcatgtgttccag 362 |||||||||||||||||||| Sbjct: 284 gtcgagctcatgtgttccag 303
>gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183526 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 agaaaagaagaagagaagca 239 |||||||||||||||||||| Sbjct: 108317 agaaaagaagaagagaagca 108336
>gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chromosome unknown, complete sequence Length = 159393 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 186 aatacaactccactgtgaatttat 209 |||||||||||||||| ||||||| Sbjct: 4185 aatacaactccactgtaaatttat 4162
>dbj|AB007647.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21 Length = 78369 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 205 tttatttttgtgtacagaaa 224 |||||||||||||||||||| Sbjct: 27316 tttatttttgtgtacagaaa 27297
>emb|AJ332929.1|HSA332929 Homo sapiens genomic sequence surrounding NotI site, clone NR5-KC12R Length = 669 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 15 aagtttcttgtcgtgtgtgtttgt 38 ||||||||| |||||||||||||| Sbjct: 293 aagtttcttatcgtgtgtgtttgt 270
>gb|AC147900.2| Xenopus tropicalis clone CH216-53P23, complete sequence Length = 157316 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 319 atttgcccccacttttgtttccat 342 ||||||| |||||||||||||||| Sbjct: 112966 atttgccaccacttttgtttccat 112989
>gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region FRA3B sequence Length = 185763 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 190 caactccactgtgaatttattttt 213 |||| ||||||||||||||||||| Sbjct: 47176 caacaccactgtgaatttattttt 47153
>emb|Z75955.1|CER07B7 Caenorhabditis elegans Cosmid R07B7, complete sequence Length = 43469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 acagaaaagaagaagagaag 237 |||||||||||||||||||| Sbjct: 21471 acagaaaagaagaagagaag 21452
>gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, complete sequence Length = 171550 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 cgtgtgtgtttgtctattct 45 |||||||||||||||||||| Sbjct: 73233 cgtgtgtgtttgtctattct 73214
>gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, complete sequence Length = 178210 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 agaaaagaagaagagaagca 239 |||||||||||||||||||| Sbjct: 166389 agaaaagaagaagagaagca 166370 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,634,484 Number of Sequences: 3902068 Number of extensions: 5634484 Number of successful extensions: 122233 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122096 Number of HSP's gapped (non-prelim): 137 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)