ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF029857.1|AF029857 Sorghum bicolor cytochrome P450 CYP99A1 (... 82 2e-12
2ref|XM_474673.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
3emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AK071546.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
6emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4,... 68 3e-08
7gb|AF321864.1|AF321864 Lolium rigidum clone Lol-5-v putative cyt... 62 2e-06
8ref|XM_464360.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
10dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
11emb|AL138962.16| Human DNA sequence from clone RP11-279N8 on chr... 44 0.40
12gb|AC134729.2| Homo sapiens 3 BAC RP11-671L3 (Roswell Park Cance... 44 0.40
13gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Can... 44 0.40
14gb|DQ094188.2| Toxoplasma gondii ATP-binding cassette protein su... 42 1.6
15emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 42 1.6
16gb|AC022024.7| Homo sapiens chromosome 10 clone RP11-432B10, com... 42 1.6
17emb|BX005309.14| Zebrafish DNA sequence from clone CH211-265M20 ... 42 1.6
18emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in... 42 1.6
19gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, c... 42 1.6
20gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence 40 6.3
21gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, c... 40 6.3
22ref|XM_609087.2| PREDICTED: Bos taurus similar to Ryanodine rece... 40 6.3
23emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on ... 40 6.3
24gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence 40 6.3
25gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, co... 40 6.3
26emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chr... 40 6.3
27gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, comp... 40 6.3
28gb|AC164624.3| Mus musculus 10 BAC RP24-324P5 (Roswell Park Canc... 40 6.3
29ref|XM_682489.1| PREDICTED: Danio rerio similar to homer homolog... 40 6.3
30gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Canc... 40 6.3
31gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chrom... 40 6.3
32dbj|AB007647.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 6.3
33emb|AJ332929.1|HSA332929 Homo sapiens genomic sequence surroundi... 40 6.3
34gb|AC147900.2| Xenopus tropicalis clone CH216-53P23, complete se... 40 6.3
35gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region ... 40 6.3
36emb|Z75955.1|CER07B7 Caenorhabditis elegans Cosmid R07B7, comple... 40 6.3
37gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, co... 40 6.3
38gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, compl... 40 6.3

>gb|AF029857.1|AF029857 Sorghum bicolor cytochrome P450 CYP99A1 (CYP99A1) mRNA, partial cds
          Length = 1689

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 365  gggaggctccaatcaaagtagtagaggagtcgtgccaccatgagctgaagcgtggccagc 424
            |||||||||||||||||||||||||| || ||||| ||||||||||  |||| ||| |||
Sbjct: 1436 gggaggctccaatcaaagtagtagagcagccgtgcaaccatgagctccagcgcggcgagc 1377

                                         
Query: 425  ccaaaggtatcgccggggcacttcctcct 453
            |||||||| |  || |||||| |||||||
Sbjct: 1376 ccaaaggtgtttccagggcacatcctcct 1348



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>ref|XM_474673.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1524

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 357  ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410
            |||| ||||||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 1414 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 1361



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>emb|AL662936.4|OSJN00137 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0052P16,
              complete sequence
          Length = 155702

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                    
Query: 357    ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410
              |||| ||||||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 151921 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 151868



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                     
Query: 357     ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410
               |||| ||||||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 5451272 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 5451219



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>dbj|AK071546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100C12, full
            insert sequence
          Length = 1750

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 357  ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410
            |||| ||||||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 1478 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 1425



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>emb|AL662934.3|OSJN00136 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027O01,
            complete sequence
          Length = 150283

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 49/54 (90%)
 Strand = Plus / Minus

                                                                  
Query: 357  ttccagcagggaggctccaatcaaagtagtagaggagtcgtgccaccatgagct 410
            |||| ||||||||||||||||| ||||||||||| || |||||||| |||||||
Sbjct: 5902 ttccggcagggaggctccaatcgaagtagtagagaaggcgtgccacgatgagct 5849



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>gb|AF321864.1|AF321864 Lolium rigidum clone Lol-5-v putative cytochrome P450 mRNA, complete
            cds
          Length = 1757

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 73/87 (83%)
 Strand = Plus / Minus

                                                                        
Query: 370  gctccaatcaaagtagtagaggagtcgtgccaccatgagctgaagcgtggccagcccaaa 429
            |||||| ||||| ||||| || |||||||||||||||||||  | |||||| ||  ||||
Sbjct: 1431 gctccattcaaaatagtacagaagtcgtgccaccatgagctccaacgtggctagtgcaaa 1372

                                       
Query: 430  ggtatcgccggggcacttcctcctccc 456
            |  ||| ||||||||| ||||||||||
Sbjct: 1371 gccatcaccggggcacatcctcctccc 1345



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>ref|XM_464360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1560

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 359  ccagcagggaggctccaatcaaagtagtagag 390
            |||||||||||||||||||| |||| ||||||
Sbjct: 1445 ccagcagggaggctccaatcgaagtggtagag 1414



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                               
Query: 359     ccagcagggaggctccaatcaaagtagtagag 390
               |||||||||||||||||||| |||| ||||||
Sbjct: 4724431 ccagcagggaggctccaatcgaagtggtagag 4724462



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>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1115_B01
          Length = 129329

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                            
Query: 359  ccagcagggaggctccaatcaaagtagtagag 390
            |||||||||||||||||||| |||| ||||||
Sbjct: 5021 ccagcagggaggctccaatcgaagtggtagag 5052



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>emb|AL138962.16| Human DNA sequence from clone RP11-279N8 on chromosome 13 Contains two
             novel genes, complete sequence
          Length = 124518

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 193   ctccactgtgaatttatttttg 214
             ||||||||||||||||||||||
Sbjct: 79000 ctccactgtgaatttatttttg 79021



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>gb|AC134729.2| Homo sapiens 3 BAC RP11-671L3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 155733

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 199    tgtgaatttatttttgtgtaca 220
              ||||||||||||||||||||||
Sbjct: 128603 tgtgaatttatttttgtgtaca 128582



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>gb|AC126471.4| Homo sapiens 12 BAC RP11-629O19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 199945

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 246    taatagtatttatctgctatca 267
              ||||||||||||||||||||||
Sbjct: 192364 taatagtatttatctgctatca 192385



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>gb|DQ094188.2| Toxoplasma gondii ATP-binding cassette protein subfamily B member 1
             (ABC.B1) gene, complete cds
          Length = 24600

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 220   agaaaagaagaagagaagcac 240
             |||||||||||||||||||||
Sbjct: 17254 agaaaagaagaagagaagcac 17234



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>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
              complete sequence
          Length = 262038

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 201    tgaatttatttttgtgtacagaaaa 225
              |||| ||||||||||||||||||||
Sbjct: 162244 tgaaattatttttgtgtacagaaaa 162268



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>gb|AC022024.7| Homo sapiens chromosome 10 clone RP11-432B10, complete sequence
          Length = 168862

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     agcccttggctaaaagtttct 22
             |||||||||||||||||||||
Sbjct: 85394 agcccttggctaaaagtttct 85374



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>emb|BX005309.14| Zebrafish DNA sequence from clone CH211-265M20 in linkage group 10,
             complete sequence
          Length = 179240

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    gtgtgtgtttgtctattctga 47
             |||||||||||||||||||||
Sbjct: 82290 gtgtgtgtttgtctattctga 82270



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>emb|BX088560.7| Zebrafish DNA sequence from clone DKEY-237O15 in linkage group 10,
              complete sequence
          Length = 156486

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 27     gtgtgtgtttgtctattctga 47
              |||||||||||||||||||||
Sbjct: 105582 gtgtgtgtttgtctattctga 105562



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>gb|AC131987.10| Mus musculus chromosome 13, clone RP24-184L10, complete sequence
          Length = 174529

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 217   tacagaaaagaagaagagaag 237
             |||||||||||||||||||||
Sbjct: 39611 tacagaaaagaagaagagaag 39591



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>gb|AF521177.1| Hordeum vulgare contig 211252, complete sequence
          Length = 211664

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 45     tgatgtgattgatccatgtacaagtttcaaca 76
              ||||||||||||||| || || ||||||||||
Sbjct: 119206 tgatgtgattgatccgtggacgagtttcaaca 119175



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>gb|AC114677.13| Mus musculus chromosome 18, clone RP24-213K19, complete sequence
          Length = 182311

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   tacagaaaagaagaagagaa 236
             ||||||||||||||||||||
Sbjct: 47294 tacagaaaagaagaagagaa 47275



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>ref|XM_609087.2| PREDICTED: Bos taurus similar to Ryanodine receptor 3 (Brain-type
            ryanodine receptor) (RyR3) (RYR-3) (Brain ryanodine
            receptor-calcium release channel) (LOC530612), partial
            mRNA
          Length = 4492

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 359  ccagcagggaggctccaatcaaag 382
            |||||||||||||||| |||||||
Sbjct: 3190 ccagcagggaggctcccatcaaag 3213



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>emb|Z76735.1|HS246O8 Human DNA sequence from clone RP1-246O8 on chromosome X, complete
             sequence
          Length = 175745

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 211   tttgtgtacagaaaagaagaagag 234
             ||||||||| ||||||||||||||
Sbjct: 56888 tttgtgtactgaaaagaagaagag 56911



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>gb|AC175208.3| Cavia porcellus clone CH234-14J14, complete sequence
          Length = 140345

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   gcagttggttcttcctcctc 316
             ||||||||||||||||||||
Sbjct: 70666 gcagttggttcttcctcctc 70685



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>gb|AC163451.2| Mus musculus chromosome 18, clone RP24-173G16, complete sequence
          Length = 146338

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 217    tacagaaaagaagaagagaa 236
              ||||||||||||||||||||
Sbjct: 107773 tacagaaaagaagaagagaa 107754



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>emb|AL713960.17| Mouse DNA sequence from clone RP23-448I9 on chromosome 11 Contains the 5'
              end of the Car10 gene for carbonic anhydrase 10 and one CpG
              island, complete sequence
          Length = 203449

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    ttttgtgtacagaaaagaag 229
              ||||||||||||||||||||
Sbjct: 157847 ttttgtgtacagaaaagaag 157866



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>gb|AC104164.2| Homo sapiens chromosome 3 clone RP11-641C17, complete sequence
          Length = 197483

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 190   caactccactgtgaatttattttt 213
             |||| |||||||||||||||||||
Sbjct: 37848 caacaccactgtgaatttattttt 37871



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>gb|AC164624.3| Mus musculus 10 BAC RP24-324P5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 199853

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 220   agaaaagaagaagagaagca 239
             ||||||||||||||||||||
Sbjct: 19859 agaaaagaagaagagaagca 19840



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>ref|XM_682489.1| PREDICTED: Danio rerio similar to homer homolog 3 (LOC559173),
           partial mRNA
          Length = 660

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 gtcgagctcatgtgttccag 362
           ||||||||||||||||||||
Sbjct: 284 gtcgagctcatgtgttccag 303



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>gb|AC158642.8| Mus musculus 10 BAC RP23-475H6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 183526

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 220    agaaaagaagaagagaagca 239
              ||||||||||||||||||||
Sbjct: 108317 agaaaagaagaagagaagca 108336



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>gb|AC160568.2| Pan troglodytes BAC clone CH251-293A11 from chromosome unknown,
            complete sequence
          Length = 159393

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 186  aatacaactccactgtgaatttat 209
            |||||||||||||||| |||||||
Sbjct: 4185 aatacaactccactgtaaatttat 4162



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>dbj|AB007647.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJB21
          Length = 78369

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   tttatttttgtgtacagaaa 224
             ||||||||||||||||||||
Sbjct: 27316 tttatttttgtgtacagaaa 27297



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>emb|AJ332929.1|HSA332929 Homo sapiens genomic sequence surrounding NotI site, clone
           NR5-KC12R
          Length = 669

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 15  aagtttcttgtcgtgtgtgtttgt 38
           ||||||||| ||||||||||||||
Sbjct: 293 aagtttcttatcgtgtgtgtttgt 270



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>gb|AC147900.2| Xenopus tropicalis clone CH216-53P23, complete sequence
          Length = 157316

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 319    atttgcccccacttttgtttccat 342
              ||||||| ||||||||||||||||
Sbjct: 112966 atttgccaccacttttgtttccat 112989



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>gb|AF152363.1|AF152363 Homo sapiens constitutive fragile region FRA3B sequence
          Length = 185763

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 190   caactccactgtgaatttattttt 213
             |||| |||||||||||||||||||
Sbjct: 47176 caacaccactgtgaatttattttt 47153



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>emb|Z75955.1|CER07B7 Caenorhabditis elegans Cosmid R07B7, complete sequence
          Length = 43469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 218   acagaaaagaagaagagaag 237
             ||||||||||||||||||||
Sbjct: 21471 acagaaaagaagaagagaag 21452



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>gb|AC111082.23| Mus musculus chromosome 17, clone RP23-140I9, complete sequence
          Length = 171550

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    cgtgtgtgtttgtctattct 45
             ||||||||||||||||||||
Sbjct: 73233 cgtgtgtgtttgtctattct 73214



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>gb|AC131789.4| Mus musculus BAC clone RP24-444D19 from 10, complete sequence
          Length = 178210

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 220    agaaaagaagaagagaagca 239
              ||||||||||||||||||||
Sbjct: 166389 agaaaagaagaagagaagca 166370


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,634,484
Number of Sequences: 3902068
Number of extensions: 5634484
Number of successful extensions: 122233
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122096
Number of HSP's gapped (non-prelim): 137
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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