ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC007196.5| Arabidopsis thaliana chromosome 2 clone T18C20 ma... 50 0.006
2ref|XM_677105.1| Aspergillus nidulans FGSC A4 hypothetical prote... 46 0.095
3gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 46 0.095
4emb|AJ617740.1| Pseudomonas putida clc transposon 46 0.095
5gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 44 0.38
6gb|AC167201.6| Mus musculus 10 BAC RP23-402J11 (Roswell Park Can... 42 1.5
7emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 42 1.5
8gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell... 42 1.5
9dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
10gb|AC160029.3| Mus musculus 10 BAC RP24-105I7 (Roswell Park Canc... 42 1.5
11dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
12gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 ... 42 1.5
13gb|AC004713.1|AC004713 Drosophila melanogaster, chromosome 3L, r... 42 1.5
14gb|AC005618.1| Homo sapiens chromosome 5, BAC clone 249h5 (LBNL ... 40 5.9
15ref|XM_452682.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C10824g ... 40 5.9
16gb|AY915170.1| Schistosoma japonicum SJCHGC03240 protein mRNA, c... 40 5.9
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.9
18gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 5.9
19gb|AC099647.5| Homo sapiens BAC clone RP11-566O17 from 7, comple... 40 5.9
20gb|AC005998.3| Homo sapiens PAC clone RP4-622E21 from 7, complet... 40 5.9
21gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete se... 40 5.9
22ref|XM_660227.1| Cryptosporidium hominis TU502 hypothetical prot... 40 5.9
23gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, com... 40 5.9
24gb|AC142296.1| Pan troglodytes BAC clone RP43-97L1 from Y, compl... 40 5.9
25gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare str... 40 5.9
26dbj|BS000665.1| Pan troglodytes chromosome Y clone:PTB-114E01, c... 40 5.9
27gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 5.9
28gb|AC104147.4| Drosophila melanogaster X BAC RP98-33I18 (Roswell... 40 5.9
29gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell ... 40 5.9
30ref|NG_000012.2| Homo sapiens protocadherin gamma cluster extend... 40 5.9
31gb|AC024858.1| Caenorhabditis elegans cosmid Y71H2AL, complete s... 40 5.9
32gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 5.9
33gb|AF349038.1|AF349038 Homo sapiens TFIID subunit TAFII55 (TAF2F... 40 5.9
34dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
35dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
36gb|AY394670.1| Uncultured basidiomycete clone K9-20 internal tra... 40 5.9
37gb|AC008940.3|AC008940 Homo sapiens chromosome 5 clone CTD-2319M... 40 5.9
38dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.9
39dbj|AK071041.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.9
40gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 o... 40 5.9
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.9
42emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.9
43emb|AL021107.1|DMC30B7 Drosophila melanogaster cosmid clone 30B7 40 5.9
44dbj|AB012082.2| Adiantum capillus-veneris gene for PHY3, complet... 40 5.9 
>gb|AC007196.5| Arabidopsis thaliana chromosome 2 clone T18C20 map RNS1, complete
             sequence
          Length = 35137

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                      
Query: 59    aacaaacgaagaaacaaattaaaaa 83
             |||||||||||||||||||||||||
Sbjct: 11508 aacaaacgaagaaacaaattaaaaa 11532
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>ref|XM_677105.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8928.2), mRNA
          Length = 4401

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 397  cagcccatcgccgacgaacaccg 419
            |||||||||||||||||||||||
Sbjct: 2433 cagcccatcgccgacgaacaccg 2455
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                      
Query: 390     catgccgcagcccatcgccgacg 412
               |||||||||||||||||||||||
Sbjct: 3590151 catgccgcagcccatcgccgacg 3590129
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>emb|AJ617740.1| Pseudomonas putida clc transposon
          Length = 105027

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 390   catgccgcagcccatcgccgacg 412
             |||||||||||||||||||||||
Sbjct: 73966 catgccgcagcccatcgccgacg 73988
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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 69      gaaacaaattaaaaagtttgcg 90
               ||||||||||||||||||||||
Sbjct: 3522836 gaaacaaattaaaaagtttgcg 3522815
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>gb|AC167201.6| Mus musculus 10 BAC RP23-402J11 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 216676

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 59    aacaaacgaagaaacaaattaaaaa 83
             ||||||| |||||||||||||||||
Sbjct: 42476 aacaaacaaagaaacaaattaaaaa 42452
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>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL
              Y-1140 of Kluyveromyces lactis
          Length = 1753957

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 57     agaacaaacgaagaaacaaattaaa 81
              |||| ||||||||||||||||||||
Sbjct: 932311 agaagaaacgaagaaacaaattaaa 932287
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>gb|AC010063.7| Drosophila melanogaster 3L BAC RP98-16A3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194006

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 70     aaacaaattaaaaagtttgcg 90
              |||||||||||||||||||||
Sbjct: 157085 aaacaaattaaaaagtttgcg 157105
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 322      ggcgcctcctcccgtcgcctc 342
                |||||||||||||||||||||
Sbjct: 14541727 ggcgcctcctcccgtcgcctc 14541707



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 322      ggcgcctcctcccgtcgcctc 342
                |||||||||||||||||||||
Sbjct: 14538064 ggcgcctcctcccgtcgcctc 14538044
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>gb|AC160029.3| Mus musculus 10 BAC RP24-105I7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 184696

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 59    aacaaacgaagaaacaaattaaaaa 83
             ||||||| |||||||||||||||||
Sbjct: 22036 aacaaacaaagaaacaaattaaaaa 22060
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>dbj|AP005093.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1294_G06
          Length = 115468

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   ggcgcctcctcccgtcgcctc 342
             |||||||||||||||||||||
Sbjct: 40016 ggcgcctcctcccgtcgcctc 39996



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   ggcgcctcctcccgtcgcctc 342
             |||||||||||||||||||||
Sbjct: 36353 ggcgcctcctcccgtcgcctc 36333
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>gb|AE003473.3| Drosophila melanogaster chromosome 3L, section 7 of 83 of the complete
             sequence
          Length = 315108

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aaacaaattaaaaagtttgcg 90
             |||||||||||||||||||||
Sbjct: 74810 aaacaaattaaaaagtttgcg 74790
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>gb|AC004713.1|AC004713 Drosophila melanogaster, chromosome 3L, region 62B8-62B11, P1 clone
             DS04710, complete sequence
          Length = 72327

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aaacaaattaaaaagtttgcg 90
             |||||||||||||||||||||
Sbjct: 46334 aaacaaattaaaaagtttgcg 46314
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>gb|AC005618.1| Homo sapiens chromosome 5, BAC clone 249h5 (LBNL H149), complete
             sequence
          Length = 176714

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   cctctgtttcttcttcctgc 286
             ||||||||||||||||||||
Sbjct: 37963 cctctgtttcttcttcctgc 37944
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>ref|XM_452682.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C10824g predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 57  agaacaaacgaagaaacaaattaa 80
           |||| |||||||||||||||||||
Sbjct: 307 agaagaaacgaagaaacaaattaa 330
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>gb|AY915170.1| Schistosoma japonicum SJCHGC03240 protein mRNA, complete cds
          Length = 1054

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 60  acaaacgaagaaacaaattaaaaa 83
           |||| |||||||||||||||||||
Sbjct: 536 acaatcgaagaaacaaattaaaaa 513
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 310      gtcgtcgtccatggcgcctc 329
                ||||||||||||||||||||
Sbjct: 10664404 gtcgtcgtccatggcgcctc 10664385
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 262     gacggcctctgtttcttcttcctgccgc 289
               |||||| || ||||||||||||||||||
Sbjct: 3688358 gacggcttccgtttcttcttcctgccgc 3688385
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>gb|AC099647.5| Homo sapiens BAC clone RP11-566O17 from 7, complete sequence
          Length = 26922

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaggtcaaaacacaaaaatt 26
             ||||||||||||||||||||
Sbjct: 24061 aaggtcaaaacacaaaaatt 24042
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>gb|AC005998.3| Homo sapiens PAC clone RP4-622E21 from 7, complete sequence
          Length = 96556

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 7     aaggtcaaaacacaaaaatt 26
             ||||||||||||||||||||
Sbjct: 21122 aaggtcaaaacacaaaaatt 21103
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>gb|AF040648.2| Caenorhabditis elegans fosmid H19M22, complete sequence
          Length = 44699

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     aaaggtcaaaacacaaaaat 25
             ||||||||||||||||||||
Sbjct: 40748 aaaggtcaaaacacaaaaat 40729
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>ref|XM_660227.1| Cryptosporidium hominis TU502 hypothetical protein (Chro.30202)
           partial mRNA
          Length = 707

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 67  aagaaacaaattaaaaagtt 86
           ||||||||||||||||||||
Sbjct: 463 aagaaacaaattaaaaagtt 482
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>gb|AC146242.3| Pan troglodytes BAC clone CH251-163E9 from Y, complete sequence
          Length = 142863

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 12     caaaacacaaaaatttaccatgagtggt 39
              ||||||||||||||| |||| |||||||
Sbjct: 117688 caaaacacaaaaattaaccaggagtggt 117715
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>gb|AC142296.1| Pan troglodytes BAC clone RP43-97L1 from Y, complete sequence
          Length = 158231

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 12     caaaacacaaaaatttaccatgagtggt 39
              ||||||||||||||| |||| |||||||
Sbjct: 111872 caaaacacaaaaattaaccaggagtggt 111845
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>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0032G21, from chromosome 3, complete sequence
          Length = 187621

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 310   gtcgtcgtccatggcgcctc 329
             ||||||||||||||||||||
Sbjct: 81318 gtcgtcgtccatggcgcctc 81299
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>dbj|BS000665.1| Pan troglodytes chromosome Y clone:PTB-114E01, complete sequences
          Length = 178566

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 12     caaaacacaaaaatttaccatgagtggt 39
              ||||||||||||||| |||| |||||||
Sbjct: 111416 caaaacacaaaaattaaccaggagtggt 111389
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 12       caaaacacaaaaatttaccatgagtggt 39
                ||||||||||||||| |||| |||||||
Sbjct: 20359246 caaaacacaaaaattaaccaggagtggt 20359273
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>gb|AC104147.4| Drosophila melanogaster X BAC RP98-33I18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170490

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    agaaacaaattaaaaagttt 87
             ||||||||||||||||||||
Sbjct: 10910 agaaacaaattaaaaagttt 10929
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>gb|AC098576.7| Drosophila melanogaster X BAC RP98-3E12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 175262

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 68     agaaacaaattaaaaagttt 87
              ||||||||||||||||||||
Sbjct: 149541 agaaacaaattaaaaagttt 149560
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>ref|NG_000012.2| Homo sapiens protocadherin gamma cluster extended (LOC654785) on
             chromosome 5
          Length = 226150

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   cctctgtttcttcttcctgc 286
             ||||||||||||||||||||
Sbjct: 36648 cctctgtttcttcttcctgc 36629
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>gb|AC024858.1| Caenorhabditis elegans cosmid Y71H2AL, complete sequence
          Length = 19556

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 6    aaaggtcaaaacacaaaaat 25
            ||||||||||||||||||||
Sbjct: 5299 aaaggtcaaaacacaaaaat 5280
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 181     acggcgcgccgcgcatctac 200
               ||||||||||||||||||||
Sbjct: 1057221 acggcgcgccgcgcatctac 1057240
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>gb|AF349038.1|AF349038 Homo sapiens TFIID subunit TAFII55 (TAF2F) gene, complete cds
          Length = 17042

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 267  cctctgtttcttcttcctgc 286
            ||||||||||||||||||||
Sbjct: 7184 cctctgtttcttcttcctgc 7203
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 59      aacaaacgaagaaacaaattaaaa 82
               |||||||||| |||||||||||||
Sbjct: 8411260 aacaaacgaaaaaacaaattaaaa 8411283
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 310      gtcgtcgtccatggcgcctc 329
                ||||||||||||||||||||
Sbjct: 10662505 gtcgtcgtccatggcgcctc 10662486
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>gb|AY394670.1| Uncultured basidiomycete clone K9-20 internal transcribed spacer 1,
           partial sequence; 5.8S ribosomal RNA gene and internal
           transcribed spacer 2, complete sequence; and 28S
           ribosomal RNA gene, partial sequence
          Length = 687

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   aggtcaaaacacaaaaattt 27
           ||||||||||||||||||||
Sbjct: 636 aggtcaaaacacaaaaattt 617
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>gb|AC008940.3|AC008940 Homo sapiens chromosome 5 clone CTD-2319M24, complete sequence
          Length = 131975

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   ctctgtttcttcttcctgcc 287
             ||||||||||||||||||||
Sbjct: 87823 ctctgtttcttcttcctgcc 87804
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>dbj|AP005930.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0502B12
          Length = 197160

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     caagagaacaaacgaagaaa 72
              ||||||||||||||||||||
Sbjct: 172159 caagagaacaaacgaagaaa 172140
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>dbj|AK071041.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081F02, full
           insert sequence
          Length = 1575

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 310 gtcgtcgtccatggcgcctc 329
           ||||||||||||||||||||
Sbjct: 88  gtcgtcgtccatggcgcctc 69
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>gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 of 74 of the complete
             sequence
          Length = 300933

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    agaaacaaattaaaaagttt 87
             ||||||||||||||||||||
Sbjct: 53200 agaaacaaattaaaaagttt 53219
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 59      aacaaacgaagaaacaaattaaaa 82
               |||||||||| |||||||||||||
Sbjct: 8411143 aacaaacgaaaaaacaaattaaaa 8411166
to top
>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146444

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    aacaaacgaagaaacaaattaaaa 82
             |||||||||| |||||||||||||
Sbjct: 17923 aacaaacgaaaaaacaaattaaaa 17946
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>emb|AL021107.1|DMC30B7 Drosophila melanogaster cosmid clone 30B7
          Length = 36000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    agaaacaaattaaaaagttt 87
             ||||||||||||||||||||
Sbjct: 27017 agaaacaaattaaaaagttt 27036
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>dbj|AB012082.2| Adiantum capillus-veneris gene for PHY3, complete cds
          Length = 5537

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 338  gcctccaatcacctcccttg 357
            ||||||||||||||||||||
Sbjct: 2396 gcctccaatcacctcccttg 2377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,807,510
Number of Sequences: 3902068
Number of extensions: 3807510
Number of successful extensions: 112748
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 112278
Number of HSP's gapped (non-prelim): 470
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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