>DHH1_CRYNV (Q58Z64) ATP-dependent RNA helicase VAD1 (EC 3.6.1.-) (Virulence|
           associated DEAD box protein 1)
          Length = 616

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 265 APAVQEHVQQQPVRVRDLPARPEQADQLHHRRRIPPQAPTHRLRRHVPGSAGV 423
           APA+ E  ++ P       A P    Q   R+R  P  P+H++  H P +A +
Sbjct: 411 APAMVEEERESPPPKPAAIAAPPAQQQPQQRQRQHPPVPSHQVAHHSPAAAPI 463

>FUSC3_FUSCU (Q8J1X7) Allergen Fus c 3|
          Length = 450

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
 Frame = +1

Query: 199 DHAAGVFAGTYQLPERRGVQSSAPAVQEHVQQQPVRV-----RDLPARPEQAD-QLHHRR 360
           DHA       + + E   +  + P    H  QQP+       R+ P RPE  + + HH  
Sbjct: 4   DHAGDQSFYDFLIEEPEMIAPTPPGQFPH--QQPISSPNRTSRNTPLRPESTEIETHHHA 61

Query: 361 RIPPQAPTHRLRRHVPGS 414
             PP  P   ++  VPG+
Sbjct: 62  NHPPALPVLGMQLPVPGT 79

>TRUB_SYNP7 (Q8KIY0) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 294

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 244 RRGVQSSAPAVQEHVQQQPVRVRDLPARPEQADQLHHRRRIPPQAP 381
           R  ++++ P    H+QQQP +V  +  + ++  QL  R   P + P
Sbjct: 97  REAIEAALPQFLGHIQQQPPQVSAVQVQGQRLYQLARRGEAPTELP 142

>TRUB_SYNP6 (Q5N5A0) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 294

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 244 RRGVQSSAPAVQEHVQQQPVRVRDLPARPEQADQLHHRRRIPPQAP 381
           R  ++++ P    H+QQQP +V  +  + ++  QL  R   P + P
Sbjct: 97  REAIEAALPQFLGHIQQQPPQVSAVQVQGQRLYQLARRGEAPTELP 142

>SALM_DROVI (P39806) Homeotic protein spalt-major|
          Length = 1402

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
 Frame = +1

Query: 232  QLPERRGVQSSAPAVQEHVQQQPVRV--RDLPARPEQADQLHHRRRIPPQAPTHRLRRHV 405
            QLP   G+    P +Q H+QQQ   +  +        A Q HH +     A  H+ + H+
Sbjct: 1169 QLPPSVGIDCLPPGLQHHLQQQHQHLMQQQXAVAAAAAAQHHHHQMQQHAAALHQHQEHL 1228

>SOX9_PIG (O18896) Transcription factor SOX-9|
          Length = 509

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 256 QSSAPAVQEHVQQQPVRVRDLPARPEQADQLHHRRRIPPQAP 381
           +  AP    H  QQP  V   PA+P+ A  L  + + PPQ P
Sbjct: 338 KQQAPPPPPHPPQQPPPVPQAPAQPQAA--LPQQPQAPPQQP 377

>RGYR2_AERPE (Q9YC75) Reverse gyrase 2 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1222

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -1

Query: 420 AGAARDVASEAVRRGLRWDTPSMVELVGLLRAGGQVADAHG 298
           AG A  + SE   R + W         GLLR GG V DA G
Sbjct: 497 AGEAAGIISETAPRLVDWLVAEARLQGGLLRVGGLVVDARG 537

>GAST_HUMAN (P01350) Gastrin precursor [Contains: Gastrin 71 (Component I);|
           Gastrin 52 (G52); Big gastrin (Gastrin 34) (G34)
           (Component II); Gastrin (Gastrin 17) (G17) (Component
           III); Gastrin 14 (G14); Gastrin 6 (G6)]
          Length = 101

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 313 DLPARPEQADQLHHRRRIPPQAPTH 387
           +LP   +Q    HHRR++ PQ P H
Sbjct: 43  ELPWLEQQGPASHHRRQLGPQGPPH 67

>PCQAP_MOUSE (Q924H2) Positive cofactor 2 glutamine/Q-rich-associated protein|
           (PC2 glutamine/Q-rich-associated protein) (mPcqap)
          Length = 792

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +1

Query: 232 QLPERRGVQSSAPAVQEHVQQ-QPVRVRDLPARPEQADQLHH--RRRIPPQAPTHRLRRH 402
           Q  +++ +Q+  P  Q  +QQ QP   + LP   +Q  QLHH    + PPQA    + ++
Sbjct: 254 QQQQQQALQAQPPMQQPSMQQPQPPPSQALP---QQLSQLHHPQHHQPPPQAQQSPIAQN 310

Query: 403 VP 408
            P
Sbjct: 311 QP 312

>DHH1_CRYNE (Q5KJI2) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 625

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = +1

Query: 265 APAVQEHVQQQPVRVRDLPARPEQADQLHHRRRIPPQAPTHRLRRHVPGSAGV 423
           APA+ E  ++ P       A P    Q   R+R  P  P+H+  +  P +A V
Sbjct: 411 APAMVEEERESPPPKPAAIAAPPAQQQPQQRQRQHPPVPSHQAAQQSPAAAPV 463

>RS16_CHLCV (Q822M5) 30S ribosomal protein S16|
          Length = 119

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 244 ARAADMCQRRRLQRDHRSPERLESA 170
           AR A +CQ+RR  R  RS +R E+A
Sbjct: 90  ARKAAVCQKRRAYRQRRSLKRAEAA 114


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,951,957
Number of Sequences: 219361
Number of extensions: 1047770
Number of successful extensions: 3065
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3063
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)