>gb|AC092506.3| Homo sapiens chromosome 1 clone RP11-364B6, complete sequence
          Length = 198279

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 39     ttgaaattatgtgaaatacata 60
              ||||||||||||||||||||||
Sbjct: 190806 ttgaaattatgtgaaatacata 190827

>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome
          Length = 2467205

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 274     gtgcaggaacacgtccagcagcagc 298
               ||||||||||||| |||||||||||
Sbjct: 1362532 gtgcaggaacacgcccagcagcagc 1362556

>emb|AL049650.8|HSJ734P14 Human DNA sequence from clone RP4-734P14 on chromosome 20 Contains the
             3' end of the ZNF343 gene for zinc finger protein 343, the
             SNRPB gene for small nuclear ribonucleoprotein
             polypeptides B and B1 (B'), the 3' end of the TGM6 gene
             for transglutaminase 6 and a CpG island, complete sequence
          Length = 90220

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    aatacatacgtctaaatatcc 73
             |||||||||||||||||||||
Sbjct: 85612 aatacatacgtctaaatatcc 85592

>ref|NM_019128.3| Rattus norvegicus internexin, alpha (Inexa), mRNA
          Length = 4535

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  cacgctgcaggcgtcttcgc 221
            ||||||||||||||||||||
Sbjct: 2012 cacgctgcaggcgtcttcgc 2031

>ref|XM_610746.2| PREDICTED: Bos taurus similar to internexin neuronal intermediate
           filament protein, alpha, transcript variant 1
           (LOC532236), mRNA
          Length = 2000

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 cacgctgcaggcgtcttcgc 221
           ||||||||||||||||||||
Sbjct: 757 cacgctgcaggcgtcttcgc 776

>ref|XM_875792.1| PREDICTED: Bos taurus similar to internexin neuronal intermediate
           filament protein, alpha, transcript variant 3
           (LOC532236), mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 cacgctgcaggcgtcttcgc 221
           ||||||||||||||||||||
Sbjct: 632 cacgctgcaggcgtcttcgc 651

>ref|NM_011256.1| Mus musculus phosphatidylinositol transfer protein,
            membrane-associated 2 (Pitpnm2), mRNA
          Length = 6639

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  cccgcccgccctgagcaggc 338
            ||||||||||||||||||||
Sbjct: 4922 cccgcccgccctgagcaggc 4903

>gb|AC099315.3| Papio anubis clone RP41-403I2, complete sequence
          Length = 167836

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   gctggcacatatcagctgcc 239
             ||||||||||||||||||||
Sbjct: 69861 gctggcacatatcagctgcc 69880

>gb|AC097752.7| Rattus norvegicus 1 BAC CH230-75H6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 245907

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 202    cacgctgcaggcgtcttcgc 221
              ||||||||||||||||||||
Sbjct: 231160 cacgctgcaggcgtcttcgc 231179

>emb|AL359185.25| Human DNA sequence from clone RP11-382M16 on chromosome 1 Contains the
             3' end of the ACTN2 gene for actinin, alpha 2, the 5' end
             of the MTR gene for 5-methyltetrahydrofolate-homocysteine
             methyltransferase, a laminin receptor 1 (ribosomal protein
             SA, 67kDa) (LAMR1) pseydogene and a CpG island, complete
             sequence
          Length = 108841

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tttgcattccaagtgtgtgc 21
             ||||||||||||||||||||
Sbjct: 60090 tttgcattccaagtgtgtgc 60109

>gb|AC011726.11| Homo sapiens chromosome , clone RP11-14I17, complete sequence
          Length = 170074

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 248    gaggcgtccagtccagtgcacccg 271
              ||||||||||| ||||||||||||
Sbjct: 155756 gaggcgtccaggccagtgcacccg 155779

>gb|AC005013.3| Homo sapiens BAC clone GS1-165L15 from 7, complete sequence
          Length = 195917

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 220   gctggcacatatcagctgcc 239
             ||||||||||||||||||||
Sbjct: 31481 gctggcacatatcagctgcc 31500

>dbj|AK055792.1| Homo sapiens cDNA FLJ31230 fis, clone KIDNE2004520
          Length = 2006

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 248 gaggcgtccagtccagtgcacccg 271
           ||||||||||| ||||||||||||
Sbjct: 476 gaggcgtccaggccagtgcacccg 453

>gb|AC015743.9| Homo sapiens chromosome 8, clone RP11-1G11, complete sequence
          Length = 193989

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 248 gaggcgtccagtccagtgcacccg 271
           ||||||||||| ||||||||||||
Sbjct: 691 gaggcgtccaggccagtgcacccg 714

>gb|AC016993.4|AC016993 Homo sapiens clone RP11-18J9, complete sequence
          Length = 172241

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    atgtgaaatacatacgtcta 66
             ||||||||||||||||||||
Sbjct: 65559 atgtgaaatacatacgtcta 65540

>gb|AC023512.28|AC023512 Homo sapiens 12 BAC RP11-1018J11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 186044

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 31     ttaaacttttgaaattatgt 50
              ||||||||||||||||||||
Sbjct: 185228 ttaaacttttgaaattatgt 185209

>gb|AC024095.13|AC024095 Homo sapiens 12 BAC RP11-239A17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 122032

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    ttaaacttttgaaattatgt 50
             ||||||||||||||||||||
Sbjct: 92887 ttaaacttttgaaattatgt 92906

>gb|AF058693.1|AF058693 Mus musculus M-RdgB2 retinal degeneration protein B subtype 2 mRNA,
            complete cds
          Length = 6639

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  cccgcccgccctgagcaggc 338
            ||||||||||||||||||||
Sbjct: 4922 cccgcccgccctgagcaggc 4903

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    ctgagcaggccgaccagctc 348
              ||||||||||||||||||||
Sbjct: 927544 ctgagcaggccgaccagctc 927525

>gb|AF082285.1|AF082285 Homo sapiens neurotensin/neuromedin N gene promoter region,
           complete sequence; and exon 1, partial sequence
          Length = 2500

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 47  atgtgaaatacatacgtcta 66
           ||||||||||||||||||||
Sbjct: 922 atgtgaaatacatacgtcta 903

>gb|M73049.1|RATINTLAA Rat alpha-internexin gene, complete cds
          Length = 4593

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 202  cacgctgcaggcgtcttcgc 221
            ||||||||||||||||||||
Sbjct: 2012 cacgctgcaggcgtcttcgc 2031


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,860,741
Number of Sequences: 3902068
Number of extensions: 2860741
Number of successful extensions: 60503
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60348
Number of HSP's gapped (non-prelim): 155
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)