ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TX3A_PHONI (P81793) Neurotoxin Pn3A precursor 30 1.8
2YAS5_SCHPO (Q10141) Hypothetical protein C3H8.05c precursor 29 3.1

>TX3A_PHONI (P81793) Neurotoxin Pn3A precursor|
          Length = 80

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = -2

Query: 216 LGLAVHNLFSET*QNSSVNLKLISENGLRSANPYKLHRCPSEPCR*SCMYQCCLGIPLRL 37
           L LA+  L  +   NS  N  LI E     A+ YK    P +PC      QC LG+  + 
Sbjct: 10  LALALITLGIQAEPNSGPNNPLIQEEARACADVYKECWYPEKPCCKDRACQCTLGMTCKC 69

Query: 36  VVVL 25
              L
Sbjct: 70  KATL 73



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>YAS5_SCHPO (Q10141) Hypothetical protein C3H8.05c precursor|
          Length = 1073

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = +2

Query: 68  YIQLYLQGSLGHLCNLYGFADLKPFSDMSFRFT------EEFCQVSEKRLCTANPNHVML 229
           Y+ L+L  +     N+Y ++  + FSD S   T       EF   S    C+  P+H ++
Sbjct: 187 YVCLFLDSNSNPRINVYRWSKTETFSDASSYITFSIPVPSEFSLASHIIPCSNIPDHFLV 246

Query: 230 L*ET 241
           L ET
Sbjct: 247 LLET 250


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,734,740
Number of Sequences: 219361
Number of extensions: 961946
Number of successful extensions: 1488
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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