ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart45b02 |
|---|---|
| Clone Library Name | barley_pub |
>TPT2_BRAOB (P52178) Triose phosphate/phosphate translocator, non-green| plastid, chloroplast precursor (CTPT) Length = 402 Score = 111 bits (277), Expect = 1e-24 Identities = 51/84 (60%), Positives = 65/84 (77%) Frame = -2 Query: 487 LQELCVRAALAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPV 308 +Q++ ++ +A LCFH YQ++SYMILARVSPVTHSV NC V+FF+TP+SPV Sbjct: 315 VQQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVSPV 374 Query: 307 NALGTGAALAGVYLYSRLKKTKPK 236 NA GTG ALAGV+LYSR+K+ KPK Sbjct: 375 NAFGTGIALAGVFLYSRVKRIKPK 398
>GPT1_ARATH (Q9M5A9) Glucose-6-phosphate/phosphate translocator 1, chloroplast| precursor Length = 388 Score = 62.0 bits (149), Expect = 8e-10 Identities = 28/65 (43%), Positives = 40/65 (61%) Frame = -2 Query: 445 FHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYL 266 +H Y ++SYM L ++SP+T SV N ++ FRTP+ PVNALG A+ G +L Sbjct: 323 YHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIFRTPVQPVNALGAAIAILGTFL 382 Query: 265 YSRLK 251 YS+ K Sbjct: 383 YSQAK 387
>GPT2_ARATH (Q94B38) Glucose-6-phosphate/phosphate translocator 2, chloroplast| precursor Length = 388 Score = 60.1 bits (144), Expect = 3e-09 Identities = 27/66 (40%), Positives = 40/66 (60%) Frame = -2 Query: 445 FHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYL 266 +H Y ++SYM L ++SP+T S+ N ++ F TPI PVNALG A+ G +L Sbjct: 323 YHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPIQPVNALGAAIAIFGTFL 382 Query: 265 YSRLKK 248 YS+ K+ Sbjct: 383 YSQAKQ 388
>TPT1_BRAOB (P52177) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 50.4 bits (119), Expect = 2e-06 Identities = 26/68 (38%), Positives = 38/68 (55%) Frame = -2 Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275 G+ +H Y +L+ L RV+P+TH+V N ++ F IS +GTG A+AG Sbjct: 327 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAG 386 Query: 274 VYLYSRLK 251 V LYS +K Sbjct: 387 VALYSVIK 394
>TPT_PEA (P21727) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (p36) (E30) Length = 402 Score = 49.7 bits (117), Expect = 4e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = -2 Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275 G+ +H Y +++ L RV+P+TH+V N ++ F IS +GTG A+AG Sbjct: 322 GMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAG 381 Query: 274 VYLYSRLK 251 V LYS +K Sbjct: 382 VALYSFIK 389
>SL35E_HUMAN (Q96K37) Solute carrier family 35 member E1| Length = 266 Score = 49.7 bits (117), Expect = 4e-06 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = -2 Query: 463 ALAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAA 284 A++G C +++ IL VSP+++SVAN ++ R P++ N LG A Sbjct: 122 AVSGFCNFAQNVIAFSILNLVSPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTA 181 Query: 283 LAGVYLYSRLK 251 + GV+LY++ K Sbjct: 182 ILGVFLYNKTK 192
>TPT_SPIOL (P11869) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (p36) (E29) Length = 404 Score = 49.7 bits (117), Expect = 4e-06 Identities = 26/68 (38%), Positives = 38/68 (55%) Frame = -2 Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275 G+ +H Y +L+ L RV+P+TH+V N ++ F IS A+GT A+AG Sbjct: 324 GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIAFGNKISTQTAIGTSIAIAG 383 Query: 274 VYLYSRLK 251 V LYS +K Sbjct: 384 VALYSLIK 391
>TPT_MAIZE (P49133) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 409 Score = 49.3 bits (116), Expect = 6e-06 Identities = 25/70 (35%), Positives = 38/70 (54%) Frame = -2 Query: 460 LAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAAL 281 L GL +H Y +++ L RV+P+TH+V N ++ F IS +GT A+ Sbjct: 328 LVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAI 387 Query: 280 AGVYLYSRLK 251 AGV +YS +K Sbjct: 388 AGVAMYSYIK 397
>TPT_FLAPR (P49131) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 408 Score = 49.3 bits (116), Expect = 6e-06 Identities = 25/68 (36%), Positives = 38/68 (55%) Frame = -2 Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275 G+ +H Y +L+ L RV+P+TH+V N ++ F IS A+GT A+AG Sbjct: 328 GMFYHLYNQLAINTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAG 387 Query: 274 VYLYSRLK 251 V +YS +K Sbjct: 388 VAVYSLIK 395
>SL35E_MOUSE (Q8CD26) Solute carrier family 35 member E1| Length = 265 Score = 49.3 bits (116), Expect = 6e-06 Identities = 22/71 (30%), Positives = 39/71 (54%) Frame = -2 Query: 463 ALAGLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAA 284 A++G C +++ IL +SP+++SVAN ++ R P++ N LG A Sbjct: 122 AVSGFCNFAQNVIAFSILNLISPLSYSVANATKRIMVITVSLIMLRNPVTSTNVLGMMTA 181 Query: 283 LAGVYLYSRLK 251 + GV+LY++ K Sbjct: 182 ILGVFLYNKTK 192
>TPT_FLATR (P49132) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) Length = 407 Score = 48.5 bits (114), Expect = 9e-06 Identities = 24/68 (35%), Positives = 38/68 (55%) Frame = -2 Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275 G+ +H Y +++ L RV+P+TH+V N ++ F IS A+GT A+AG Sbjct: 327 GMFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAG 386 Query: 274 VYLYSRLK 251 V +YS +K Sbjct: 387 VAIYSLIK 394
>TPT_SOLTU (P29463) Triose phosphate/phosphate translocator, chloroplast| precursor (cTPT) (E29) Length = 414 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/68 (33%), Positives = 37/68 (54%) Frame = -2 Query: 454 GLCFHGYQKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAG 275 G+ +H Y +++ L RV+P+TH+V N ++ F IS +GT A+AG Sbjct: 334 GMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTCIAIAG 393 Query: 274 VYLYSRLK 251 V +YS +K Sbjct: 394 VAIYSFIK 401
>CSPG4_HUMAN (Q6UVK1) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin| sulfate proteoglycan NG2) (Melanoma chondroitin sulfate proteoglycan) (Melanoma-associated chondroitin sulfate proteoglycan) Length = 2322 Score = 33.9 bits (76), Expect = 0.24 Identities = 24/54 (44%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = -1 Query: 467 GGTGRPLLPWLPEAVVHDPGEGVARDPLRGQLRQAS-GGHRLFRPLLPDAHLPC 309 GGTG LP+L G +R PLRG L A+ G L RPL PD H C Sbjct: 149 GGTGTLGLPYL---------RGTSR-PLRGCLHAATLNGRSLLRPLTPDVHEGC 192
>VGLC_HHV2G (P03173) Glycoprotein C precursor (Glycoprotein F)| Length = 479 Score = 32.0 bits (71), Expect = 0.91 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAP 483 RS R TP+P A+ S S +P PP +T P Sbjct: 52 RSAPRTTPTPPQPRKATKSKASTAKPAPPPKTGP 85
>CSPG4_RAT (Q00657) Chondroitin sulfate proteoglycan 4 precursor (Chondroitin| sulfate proteoglycan NG2) (HSN tumor-specific antigen) Length = 2326 Score = 31.6 bits (70), Expect = 1.2 Identities = 27/71 (38%), Positives = 32/71 (45%), Gaps = 4/71 (5%) Frame = -1 Query: 467 GGTGRPLLPWLPEAVVHDPGEGVARDPLRGQLRQAS-GGHRLFRPLLPDAHLPCQ---CT 300 G +G LP+L +G++R PLRG L A G L RPL PD H C Sbjct: 150 GSSGSLDLPYL---------KGISR-PLRGCLHSAILNGRNLLRPLTPDVHEGCAEEFSA 199 Query: 299 GDWCSTGGSLP 267 GD G S P Sbjct: 200 GDEVGLGFSGP 210
>PHF1_CLOPA (P29166) Periplasmic [Fe] hydrogenase 1 (EC 1.12.7.2) (Fe-only| hydrogenase) (CpI) Length = 574 Score = 31.2 bits (69), Expect = 1.6 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +3 Query: 42 EDVTNLQDQKFGLATIERSCCRL*YRCTTGCGKFCTTYYLNTFSR 176 +D T D++ T++R+ C L RC CGK TY + ++ Sbjct: 127 KDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNK 171
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +1 Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAPA 486 G R +P P +GS G +G+P PP PA Sbjct: 622 GERGSPGPAGERGPAGSQGIQGQPGPPGDAGPA 654
>VGLC_HHV2H (Q89730) Glycoprotein C precursor| Length = 480 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +1 Query: 379 PRSGS--RATPSPGSCTTASGSHGSRGRPVPPSRTAP 483 PR+ S R TP+P A+ S S +P PP +T P Sbjct: 50 PRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGP 86
>VGLC_HHV23 (P06475) Glycoprotein C precursor| Length = 480 Score = 30.4 bits (67), Expect = 2.7 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = +1 Query: 379 PRSGS--RATPSPGSCTTASGSHGSRGRPVPPSRTAP 483 PR+ S R TP+P A+ S S +P PP +T P Sbjct: 50 PRNASAPRTTPTPPQPRKATKSKASTAKPAPPPKTGP 86
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 30.4 bits (67), Expect = 2.7 Identities = 14/32 (43%), Positives = 15/32 (46%) Frame = +1 Query: 388 GSRATPSPGSCTTASGSHGSRGRPVPPSRTAP 483 G R TP G SG+ GS G P PP P Sbjct: 2701 GERGTPGIGGFPGPSGNDGSAGPPGPPGSVGP 2732
>CELR3_MOUSE (Q91ZI0) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| Length = 3301 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 347 LFRPLLPDAHLPCQC----TGDWCST 282 LFRP+ P A L C+C TGD+C T Sbjct: 1400 LFRPIQPIAGLRCRCPPGFTGDFCET 1425
>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 3.5 Identities = 13/35 (37%), Positives = 15/35 (42%) Frame = +1 Query: 382 RSGSRATPSPGSCTTASGSHGSRGRPVPPSRTAPA 486 + G R P P A+G G G PP T PA Sbjct: 583 KPGERGAPGPPGAVGAAGKDGEAGAQGPPGPTGPA 617
>CELR3_HUMAN (Q9NYQ7) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Flamingo homolog 1) (hFmi1) (Multiple epidermal growth factor-like domains 2) (Epidermal growth factor-like 1) Length = 3312 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 347 LFRPLLPDAHLPCQC----TGDWCST 282 LFRP+ P A L C+C TGD+C T Sbjct: 1409 LFRPIQPIAGLRCRCPPGFTGDFCET 1434
>CELR3_RAT (O88278) Cadherin EGF LAG seven-pass G-type receptor 3 precursor| (Multiple epidermal growth factor-like domains 2) Length = 3313 Score = 30.0 bits (66), Expect = 3.5 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 4/26 (15%) Frame = -1 Query: 347 LFRPLLPDAHLPCQC----TGDWCST 282 LFRP+ P A L C+C TGD+C T Sbjct: 1400 LFRPIQPIAGLRCRCPPGFTGDFCET 1425
>RGS2_MOUSE (O08849) Regulator of G-protein signaling 2 (RGS2)| Length = 211 Score = 29.6 bits (65), Expect = 4.5 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +1 Query: 58 FKTKSLVWPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFY 189 F+TKSL+ ++EA GC T + V S ++ FL+ FY Sbjct: 152 FQTKSLIAQNIQEATSGCFTTAQKRVYSLMENNSYPRFLESEFY 195
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 29.3 bits (64), Expect = 5.9 Identities = 11/33 (33%), Positives = 15/33 (45%) Frame = +1 Query: 385 SGSRATPSPGSCTTASGSHGSRGRPVPPSRTAP 483 +G+ P P +G HG+RG P P P Sbjct: 963 TGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGP 995
>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 29.3 bits (64), Expect = 5.9 Identities = 11/33 (33%), Positives = 15/33 (45%) Frame = +1 Query: 385 SGSRATPSPGSCTTASGSHGSRGRPVPPSRTAP 483 +G+ P P +G HG+RG P P P Sbjct: 963 TGAAGAPGPHGSVGPAGKHGNRGEPGPAGSVGP 995
>S12A7_MOUSE (Q9WVL3) Solute carrier family 12 member 7 (Electroneutral| potassium-chloride cotransporter 4) (K-Cl cotransporter 4) Length = 1083 Score = 29.3 bits (64), Expect = 5.9 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = +1 Query: 79 WPLLKEAAVGCSTGVLRAVASSVQPTISIHFLDLVFYI 192 W LL A + C TG+L A SV P +S+ FL ++ Sbjct: 556 WALLLTALI-CETGILIASLDSVAPILSMFFLMCYMFV 592
>YDB1_SCHPO (Q10354) Hypothetical protein C22E12.01 in chromosome I| Length = 374 Score = 28.9 bits (63), Expect = 7.7 Identities = 15/58 (25%), Positives = 26/58 (44%) Frame = -2 Query: 415 ILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYLYSRLKKTK 242 ++ + S VT SV LF+ + P+N +G L G+ +Y+ + TK Sbjct: 298 LIQKTSIVTLSVCGILKEIITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITK 355
>CTTB2_OTOGA (Q2QLG9) Cortactin-binding protein 2 (CortBP2)| Length = 1655 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/38 (44%), Positives = 17/38 (44%), Gaps = 3/38 (7%) Frame = +1 Query: 379 PRSGSRAT---PSPGSCTTASGSHGSRGRPVPPSRTAP 483 P S SR PSPGS A GS G PP AP Sbjct: 367 PPSASRIEENGPSPGSTPDAPGSAAPPGSAAPPGSAAP 404
>S35B1_HUMAN (P78383) Solute carrier family 35 member B1 (UDP-galactose| transporter-related protein 1) (UGTrel1) (hUGTrel1) Length = 322 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/67 (25%), Positives = 28/67 (41%) Frame = -2 Query: 433 QKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYLYSRL 254 Q +M + P+T S+ V+ F PISP+ +GT G+ L ++ Sbjct: 254 QSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDAKF 313 Query: 253 KKTKPKS 233 K K+ Sbjct: 314 GKGAKKT 320
>S35B1_BOVIN (Q8MII5) Solute carrier family 35 member B1 (Endoplasmic reticulum| nucleotide sugar transporter 1) Length = 322 Score = 28.9 bits (63), Expect = 7.7 Identities = 17/67 (25%), Positives = 28/67 (41%) Frame = -2 Query: 433 QKLSYMILARVSPVTHSVANCXXXXXXXXXXVLFFRTPISPVNALGTGAALAGVYLYSRL 254 Q +M + P+T S+ V+ F PISP+ +GT G+ L ++ Sbjct: 254 QSFIFMTVVYFGPLTCSIITTTRKFFTILASVILFANPISPMQWVGTVLVFLGLGLDAKF 313 Query: 253 KKTKPKS 233 K K+ Sbjct: 314 GKGAKKT 320 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,260,727 Number of Sequences: 219361 Number of extensions: 1345868 Number of successful extensions: 4605 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4600 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
