ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LSI1_ORYSA (Q6Z2T3) Silicon transporter LSI1 (Low silicon protei... 80 4e-15
2NO26_SOYBN (P08995) Nodulin-26 (N-26) 37 0.023
3NIP41_ARATH (Q9FIZ9) Putative aquaporin NIP4.1 (NOD26-like intri... 35 0.15
4NIP12_ARATH (Q8LFP7) Aquaporin NIP1.2 (NOD26-like intrinsic prot... 34 0.25
5NIP11_ARATH (Q8VZW1) Aquaporin NIP1.1 (NOD26-like intrinsic prot... 33 0.56
6NIP51_ARATH (Q9SV84) Probable aquaporin NIP5.1 (NOD26-like intri... 32 0.95
7NIP1_NICAL (P49173) Probable aquaporin NIP-type (Pollen-specific... 32 1.2
8NIP42_ARATH (Q8W036) Probable aquaporin NIP4.2 (NOD26-like intri... 31 1.6
9VGFR1_MOUSE (P35969) Vascular endothelial growth factor receptor... 31 2.1
10CRUM2_MOUSE (Q80YA8) Crumbs homolog 2 (Crumbs-like protein 2) (F... 30 4.7
11NIP31_ARATH (Q9C6T0) Putative aquaporin NIP3.1 (NOD26-like intri... 30 4.7
12ERFB_EMENI (Q5B3W7) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC... 30 4.7
13ERFB_ASPFU (Q4WWN2) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC... 29 6.2
14ILVD_METMP (Q6M0F3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 29 8.1

>LSI1_ORYSA (Q6Z2T3) Silicon transporter LSI1 (Low silicon protein 1)|
          Length = 298

 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 42/58 (72%), Positives = 52/58 (89%), Gaps = 3/58 (5%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPPKD-APQKLSSFKLRRLQS-QSVAADD-DELDHLPV 338
           LGPV+GTLSGAWTYT+IRFED PK+ + QKLSSFKLRRL+S QS+AADD DE++++ V
Sbjct: 241 LGPVMGTLSGAWTYTFIRFEDTPKEGSSQKLSSFKLRRLRSQQSIAADDVDEMENIQV 298



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>NO26_SOYBN (P08995) Nodulin-26 (N-26)|
          Length = 271

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPPKDAPQKLSSFKLRRLQSQ 380
           L PV+G ++GAW Y  +R+ D P     K +SF   R  S+
Sbjct: 231 LAPVVGAIAGAWVYNIVRYTDKPLSETTKSASFLKGRAASK 271



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>NIP41_ARATH (Q9FIZ9) Putative aquaporin NIP4.1 (NOD26-like intrinsic protein|
           4.1)
          Length = 283

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 16/33 (48%), Positives = 20/33 (60%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPPKDAPQKLSSF 404
           +GPVLG +SG + Y  IRF D P     K +SF
Sbjct: 236 VGPVLGVISGGFVYNLIRFTDKPLRELTKSASF 268



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>NIP12_ARATH (Q8LFP7) Aquaporin NIP1.2 (NOD26-like intrinsic protein 1.2)|
           (Nodulin-26-like major intrinsic protein 2) (AtNLM2)
           (NLM2 protein) (NodLikeMip2)
          Length = 294

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPPKDAPQKLSSF 404
           + P++G +SGAW Y  +R+ D P     K  SF
Sbjct: 252 VSPIVGAVSGAWVYNMVRYTDKPLREITKSGSF 284



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>NIP11_ARATH (Q8VZW1) Aquaporin NIP1.1 (NOD26-like intrinsic protein 1.1)|
           (Nodulin-26-like major intrinsic protein 1) (AtNLM1)
           (NLM1 protein) (NodLikeMip1)
          Length = 296

 Score = 32.7 bits (73), Expect = 0.56
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPPKDAPQKLSSF 404
           + P LG ++GAW Y  +R+ D P     K  SF
Sbjct: 255 VAPTLGAIAGAWVYNTVRYTDKPLREITKSGSF 287



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>NIP51_ARATH (Q9SV84) Probable aquaporin NIP5.1 (NOD26-like intrinsic protein|
           5.1) (Nodulin-26-like major intrinsic protein 6)
           (AtNLM6) (NLM6 protein) (NodLikeMip6)
          Length = 304

 Score = 32.0 bits (71), Expect = 0.95
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPPKDAPQKLSSFK 401
           + P LG +SGA  YT ++  D   D P+ + SF+
Sbjct: 270 VAPTLGAISGAAVYTGVKLNDSVTDPPRPVRSFR 303



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>NIP1_NICAL (P49173) Probable aquaporin NIP-type (Pollen-specific membrane|
           integral protein)
          Length = 270

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPP 434
           +GP++GTL+GA+ Y  IR  D P
Sbjct: 235 VGPIIGTLAGAFVYNLIRSTDKP 257



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>NIP42_ARATH (Q8W036) Probable aquaporin NIP4.2 (NOD26-like intrinsic protein|
           4.2) (Nodulin-26-like major intrinsic protein 5)
           (AtNLM5) (NLM5 protein) (NodLikeMip5)
          Length = 283

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIRFEDPPKDAPQKLSSFKLRRLQSQSVAADDD 359
           +GP +G  +G + Y ++RF D P     K +SF LR +  +  A+  D
Sbjct: 236 VGPFVGIFAGGFVYNFMRFTDKPLRELTKSASF-LRSVAQKDNASKSD 282



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>VGFR1_MOUSE (P35969) Vascular endothelial growth factor receptor 1 precursor|
           (EC 2.7.10.1) (VEGFR-1) (Tyrosine-protein kinase
           receptor FLT) (FLT-1) (Embryonic receptor kinase 2)
          Length = 1333

 Score = 30.8 bits (68), Expect = 2.1
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +1

Query: 94  VRPPSSVVCTHEQSEREQSTATMRGRTNIHMRAREYSPACIDQPLSLQVTHTHTHNNYY 270
           +RPPS V   H Q+     TAT    T + M       A     +  ++  +H+HNN +
Sbjct: 235 IRPPSPVRLLHGQTLVLNCTATTELNTRVQMSWNYPGKATKRASIRQRIDRSHSHNNVF 293



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>CRUM2_MOUSE (Q80YA8) Crumbs homolog 2 (Crumbs-like protein 2) (Fragment)|
          Length = 1248

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
 Frame = -2

Query: 219 VDTCRGVLACAHVYVCSPAHCRSRLLSLALFMCAND*AWGAHECMSART-LQSHACQVYL 43
           +D C+    C H   CS         ++A ++C    AWG H+C    T  Q H C +  
Sbjct: 329 MDECQSE-PCLHGGTCSD--------TVAGYICQCPEAWGGHDCSVQLTGCQGHTCPLAA 379

Query: 42  SC 37
           +C
Sbjct: 380 TC 381



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>NIP31_ARATH (Q9C6T0) Putative aquaporin NIP3.1 (NOD26-like intrinsic protein|
           3.1)
          Length = 269

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 502 LGPVLGTLSGAWTYTYIR 449
           + PV+G LSGAWTY  +R
Sbjct: 189 VSPVIGALSGAWTYGLLR 206



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>ERFB_EMENI (Q5B3W7) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC cysteine-rich|
           domain-containing protein erf2) (Ras protein
           acyltransferase)
          Length = 601

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 460 TYIRFEDPPKDAPQKLSSFKLRRLQSQSVAADDDELDHLP 341
           TY++F++  ++  Q+LS+ K R L   +   +D E+ H+P
Sbjct: 557 TYMQFKEYYQEGDQRLSTVKRRFLPRNTEPQNDIEMQHVP 596



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>ERFB_ASPFU (Q4WWN2) Palmitoyltransferase erf2 (EC 2.3.1.-) (DHHC cysteine-rich|
           domain-containing protein erf2) (Ras protein
           acyltransferase)
          Length = 607

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -1

Query: 460 TYIRFEDPPKDAPQKLSSFKLRRLQSQSVAADDDELDHLP 341
           TY++F+ P ++  Q+LS+ K +       A  D E+ H+P
Sbjct: 562 TYLQFKRPYQEGDQRLSAMKRKDRPRDVEAQADIEMQHVP 601



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>ILVD_METMP (Q6M0F3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 550

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 210 CRGVLACAHVYVCSPAHCRSRLLSLALFMCAND*AWGAHECMSAR 76
           C G  +CA +Y  +   C +  L L+L MCA   A  A +   A+
Sbjct: 185 CSGAGSCAGLYTANSMACLTEALGLSLPMCATTHAVDAQKVRLAK 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,953,936
Number of Sequences: 219361
Number of extensions: 1006312
Number of successful extensions: 2974
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2968
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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