Clone Name | rbart45a10 |
---|---|
Clone Library Name | barley_pub |
>CBLC_HUMAN (Q9ULV8) Signal transduction protein CBL-C (SH3-binding protein| CBL-C) (CBL-3) (RING finger protein 57) Length = 474 Score = 32.0 bits (71), Expect = 0.36 Identities = 12/18 (66%), Positives = 14/18 (77%) Frame = +1 Query: 106 CGHLLI*CSLSSWQHSTS 159 CGHLL C L++WQHS S Sbjct: 366 CGHLLCSCCLAAWQHSDS 383
>IBBWT_MEDSA (P16346) Bowman-Birk type wound-induced trypsin inhibitor| Length = 58 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 5/44 (11%) Frame = +2 Query: 173 PCDLMIVPQYHY*NQG--CQEAC---LNTKQIPAHCHCCARNEF 289 PC I PQ + G C AC L TK IP CHC F Sbjct: 9 PCTRSIPPQCRCTDIGETCHSACKTCLCTKSIPPQCHCADITNF 52
>OR4L1_HUMAN (Q8NH43) Olfactory receptor 4L1 (Olfactory receptor OR14-28)| Length = 312 Score = 29.3 bits (64), Expect = 2.3 Identities = 21/63 (33%), Positives = 30/63 (47%) Frame = +3 Query: 84 GKCNFSLLWPFADLVLSIILATFNFWDHITPAI**LYRSITTETKAARKRVLTLNRFQHT 263 G C F +WPF+ L + LA F+ ITP L SI T + + RFQ+ Sbjct: 252 GPCIFIYVWPFSSLASNKTLAV--FYTVITPL---LNPSIYTLRNKKMQEAIRKLRFQYV 306 Query: 264 ATA 272 ++A Sbjct: 307 SSA 309
>TARP2_CHLTR (Q6GX35) Translocated actin-recruiting phosphoprotein (Tarp| protein) Length = 1005 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = -3 Query: 227 PGSLGFSSDTAVQSSDRRGDVIPEVECCQDDREH*ISKWPQKTEVAFAVG 78 PG G S++ +Q++ GD++ ++E +E +S W T + G Sbjct: 765 PGDNGGSTEGPLQANQTLGDIVQDMETTGTSQETVVSPWKGSTSSTGSAG 814
>TARP1_CHLTR (O84462) Translocated actin-recruiting phosphoprotein (Tarp| protein) Length = 1005 Score = 28.9 bits (63), Expect = 3.0 Identities = 13/50 (26%), Positives = 25/50 (50%) Frame = -3 Query: 227 PGSLGFSSDTAVQSSDRRGDVIPEVECCQDDREH*ISKWPQKTEVAFAVG 78 PG G S++ +Q++ GD++ ++E +E +S W T + G Sbjct: 765 PGDNGGSTEGPLQANQTLGDIVQDMETTGTSQETVVSPWKGSTSSTESAG 814
>Y396_MYCPN (P75387) Hypothetical protein MG277 homolog (F11_orf887)| Length = 971 Score = 28.9 bits (63), Expect = 3.0 Identities = 14/51 (27%), Positives = 23/51 (45%) Frame = -1 Query: 319 LEAWKSCPRKKFVAGTAVAVCWNLFSVKTRFLAALVSVVILRYNHQIAGVM 167 +E+WK C ++ F +CW L+ALV + + Y Q G + Sbjct: 604 VESWKLCLKRSFFTMIETHICW--------LLSALVVIYLSNYQVQQLGTL 646
>CBLC_MOUSE (Q80XL1) Signal transduction protein CBL-C (SH3-binding protein| CBL-C) (CBL-3) Length = 496 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = +1 Query: 106 CGHLLI*CSLSSWQHSTS 159 CGHLL C L++WQ S S Sbjct: 365 CGHLLCSCCLAAWQDSDS 382
>ACKA_RICPR (Q9ZE38) Acetate kinase (EC 2.7.2.1) (Acetokinase)| Length = 385 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/54 (37%), Positives = 29/54 (53%) Frame = -3 Query: 314 SMEVLPPQEIRCGHSSGSVLESV*C*DTLPGSLGFSSDTAVQSSDRRGDVIPEV 153 +ME LPP+ I SGS L ++ +L S+GFS V + R G++ P V Sbjct: 190 TMEDLPPKAIIAHLGSGSSLCAIKNGLSLTSSMGFSVLDGVMMATRPGNLDPGV 243
>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein| (PBP) (PPAR-binding protein) (Thyroid hormone receptor-associated protein complex 220 kDa component) (Trap220) (Thyroid receptor-interacting protein 2) (TRIP-2) Length = 1575 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = +2 Query: 71 KAFPRQMQLQSSVAIC*SSALYHLGNIQLLGSHHPCDLMIVPQY 202 K PR + + +SV I +SA+Y L L+ HP D P + Sbjct: 245 KNVPRSLGMNASVTIEGTSAMYKLPIAPLIMGSHPADNKWTPSF 288
>ARHGA_MOUSE (Q8C033) Rho guanine nucleotide exchange factor 10| Length = 1139 Score = 27.7 bits (60), Expect = 6.8 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%) Frame = -1 Query: 361 TQIHTIAENLIDRALEAWKSCPRKKFVAGTAVAVCWNLFSVKTRFLAALVSVVILRYNHQ 182 T++ T+AE L +R +A + C K+ L S R+L V+ YN + Sbjct: 366 TELETLAEKLNERKRDADQRCEIKQIAKAINERYLNKLLSSGNRYLVRSDDVIETVYNDR 425 Query: 181 IAGVM*SQK----LNVAKMIESTRSANGH 107 V Q+ LN M + S N H Sbjct: 426 GEIVKTKQRRIFMLNDVLMCATASSRNSH 454
>RHG07_RAT (Q63744) Rho-GTPase-activating protein 7 (Rho-type| GTPase-activating protein 7) (p122-RhoGAP) (Deleted in liver cancer 1 protein homolog) (Dlc-1) (StAR-related lipid transfer protein 12) (StARD12) (START domain-containing protein 12) Length = 1091 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/49 (30%), Positives = 28/49 (57%) Frame = -3 Query: 296 PQEIRCGHSSGSVLESV*C*DTLPGSLGFSSDTAVQSSDRRGDVIPEVE 150 P+E++ +SS SV + D +PGS+ +SS + + D+ PE++ Sbjct: 423 PKELKRRNSSSSVSSRMSIYDNVPGSILYSSSGELADLENE-DIFPELD 470
>LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa autoantigen| D1) (64 kDa autoantigen 1D) (64 kDa autoantigen 1D3) (Thyroid-associated ophthalmopathy autoantigen) (Smooth muscle leiomodin) (SM-Lmod) Length = 572 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%) Frame = +1 Query: 280 QRISCGGKTSM----LLEPDLSNSQLSYEFEL 363 QR CGGKT M LL+ + S +L Y FEL Sbjct: 397 QRHICGGKTEMEIAKLLKENTSLLKLGYHFEL 428
>CRHBP_XENLA (Q91653) Corticotropin-releasing factor-binding protein precursor| (CRF-binding protein) (CRF-BP) (Corticotropin-releasing hormone-binding protein) (CRH-BP) Length = 321 Score = 27.3 bits (59), Expect = 8.9 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = +3 Query: 75 HSHGKCNFSLLWPFADLVLSIILATFN 155 H H C+FS+++P + + L FN Sbjct: 199 HQHRNCSFSIIYPVVIKIFDLTLGHFN 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,090,944 Number of Sequences: 219361 Number of extensions: 1078648 Number of successful extensions: 2648 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2582 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2648 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)