ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CBLC_HUMAN (Q9ULV8) Signal transduction protein CBL-C (SH3-bindi... 32 0.36
2IBBWT_MEDSA (P16346) Bowman-Birk type wound-induced trypsin inhi... 30 1.8
3OR4L1_HUMAN (Q8NH43) Olfactory receptor 4L1 (Olfactory receptor ... 29 2.3
4TARP2_CHLTR (Q6GX35) Translocated actin-recruiting phosphoprotei... 29 3.0
5TARP1_CHLTR (O84462) Translocated actin-recruiting phosphoprotei... 29 3.0
6Y396_MYCPN (P75387) Hypothetical protein MG277 homolog (F11_orf887) 29 3.0
7CBLC_MOUSE (Q80XL1) Signal transduction protein CBL-C (SH3-bindi... 28 4.0
8ACKA_RICPR (Q9ZE38) Acetate kinase (EC 2.7.2.1) (Acetokinase) 28 4.0
9PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-b... 28 5.2
10ARHGA_MOUSE (Q8C033) Rho guanine nucleotide exchange factor 10 28 6.8
11RHG07_RAT (Q63744) Rho-GTPase-activating protein 7 (Rho-type GTP... 28 6.8
12LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa... 28 6.8
13CRHBP_XENLA (Q91653) Corticotropin-releasing factor-binding prot... 27 8.9

>CBLC_HUMAN (Q9ULV8) Signal transduction protein CBL-C (SH3-binding protein|
           CBL-C) (CBL-3) (RING finger protein 57)
          Length = 474

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 106 CGHLLI*CSLSSWQHSTS 159
           CGHLL  C L++WQHS S
Sbjct: 366 CGHLLCSCCLAAWQHSDS 383



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>IBBWT_MEDSA (P16346) Bowman-Birk type wound-induced trypsin inhibitor|
          Length = 58

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/44 (40%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
 Frame = +2

Query: 173 PCDLMIVPQYHY*NQG--CQEAC---LNTKQIPAHCHCCARNEF 289
           PC   I PQ    + G  C  AC   L TK IP  CHC     F
Sbjct: 9   PCTRSIPPQCRCTDIGETCHSACKTCLCTKSIPPQCHCADITNF 52



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>OR4L1_HUMAN (Q8NH43) Olfactory receptor 4L1 (Olfactory receptor OR14-28)|
          Length = 312

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 21/63 (33%), Positives = 30/63 (47%)
 Frame = +3

Query: 84  GKCNFSLLWPFADLVLSIILATFNFWDHITPAI**LYRSITTETKAARKRVLTLNRFQHT 263
           G C F  +WPF+ L  +  LA   F+  ITP    L  SI T      +  +   RFQ+ 
Sbjct: 252 GPCIFIYVWPFSSLASNKTLAV--FYTVITPL---LNPSIYTLRNKKMQEAIRKLRFQYV 306

Query: 264 ATA 272
           ++A
Sbjct: 307 SSA 309



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>TARP2_CHLTR (Q6GX35) Translocated actin-recruiting phosphoprotein (Tarp|
           protein)
          Length = 1005

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 227 PGSLGFSSDTAVQSSDRRGDVIPEVECCQDDREH*ISKWPQKTEVAFAVG 78
           PG  G S++  +Q++   GD++ ++E     +E  +S W   T    + G
Sbjct: 765 PGDNGGSTEGPLQANQTLGDIVQDMETTGTSQETVVSPWKGSTSSTGSAG 814



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>TARP1_CHLTR (O84462) Translocated actin-recruiting phosphoprotein (Tarp|
           protein)
          Length = 1005

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = -3

Query: 227 PGSLGFSSDTAVQSSDRRGDVIPEVECCQDDREH*ISKWPQKTEVAFAVG 78
           PG  G S++  +Q++   GD++ ++E     +E  +S W   T    + G
Sbjct: 765 PGDNGGSTEGPLQANQTLGDIVQDMETTGTSQETVVSPWKGSTSSTESAG 814



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>Y396_MYCPN (P75387) Hypothetical protein MG277 homolog (F11_orf887)|
          Length = 971

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 319 LEAWKSCPRKKFVAGTAVAVCWNLFSVKTRFLAALVSVVILRYNHQIAGVM 167
           +E+WK C ++ F       +CW         L+ALV + +  Y  Q  G +
Sbjct: 604 VESWKLCLKRSFFTMIETHICW--------LLSALVVIYLSNYQVQQLGTL 646



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>CBLC_MOUSE (Q80XL1) Signal transduction protein CBL-C (SH3-binding protein|
           CBL-C) (CBL-3)
          Length = 496

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 106 CGHLLI*CSLSSWQHSTS 159
           CGHLL  C L++WQ S S
Sbjct: 365 CGHLLCSCCLAAWQDSDS 382



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>ACKA_RICPR (Q9ZE38) Acetate kinase (EC 2.7.2.1) (Acetokinase)|
          Length = 385

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/54 (37%), Positives = 29/54 (53%)
 Frame = -3

Query: 314 SMEVLPPQEIRCGHSSGSVLESV*C*DTLPGSLGFSSDTAVQSSDRRGDVIPEV 153
           +ME LPP+ I     SGS L ++    +L  S+GFS    V  + R G++ P V
Sbjct: 190 TMEDLPPKAIIAHLGSGSSLCAIKNGLSLTSSMGFSVLDGVMMATRPGNLDPGV 243



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>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein|
           (PBP) (PPAR-binding protein) (Thyroid hormone
           receptor-associated protein complex 220 kDa component)
           (Trap220) (Thyroid receptor-interacting protein 2)
           (TRIP-2)
          Length = 1575

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 71  KAFPRQMQLQSSVAIC*SSALYHLGNIQLLGSHHPCDLMIVPQY 202
           K  PR + + +SV I  +SA+Y L    L+   HP D    P +
Sbjct: 245 KNVPRSLGMNASVTIEGTSAMYKLPIAPLIMGSHPADNKWTPSF 288



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>ARHGA_MOUSE (Q8C033) Rho guanine nucleotide exchange factor 10|
          Length = 1139

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
 Frame = -1

Query: 361 TQIHTIAENLIDRALEAWKSCPRKKFVAGTAVAVCWNLFSVKTRFLAALVSVVILRYNHQ 182
           T++ T+AE L +R  +A + C  K+            L S   R+L     V+   YN +
Sbjct: 366 TELETLAEKLNERKRDADQRCEIKQIAKAINERYLNKLLSSGNRYLVRSDDVIETVYNDR 425

Query: 181 IAGVM*SQK----LNVAKMIESTRSANGH 107
              V   Q+    LN   M  +  S N H
Sbjct: 426 GEIVKTKQRRIFMLNDVLMCATASSRNSH 454



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>RHG07_RAT (Q63744) Rho-GTPase-activating protein 7 (Rho-type|
           GTPase-activating protein 7) (p122-RhoGAP) (Deleted in
           liver cancer 1 protein homolog) (Dlc-1) (StAR-related
           lipid transfer protein 12) (StARD12) (START
           domain-containing protein 12)
          Length = 1091

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -3

Query: 296 PQEIRCGHSSGSVLESV*C*DTLPGSLGFSSDTAVQSSDRRGDVIPEVE 150
           P+E++  +SS SV   +   D +PGS+ +SS   +   +   D+ PE++
Sbjct: 423 PKELKRRNSSSSVSSRMSIYDNVPGSILYSSSGELADLENE-DIFPELD 470



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>LMD1_HUMAN (P29536) Leiomodin-1 (Leiomodin, muscle form) (64 kDa autoantigen|
           D1) (64 kDa autoantigen 1D) (64 kDa autoantigen 1D3)
           (Thyroid-associated ophthalmopathy autoantigen) (Smooth
           muscle leiomodin) (SM-Lmod)
          Length = 572

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 4/32 (12%)
 Frame = +1

Query: 280 QRISCGGKTSM----LLEPDLSNSQLSYEFEL 363
           QR  CGGKT M    LL+ + S  +L Y FEL
Sbjct: 397 QRHICGGKTEMEIAKLLKENTSLLKLGYHFEL 428



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>CRHBP_XENLA (Q91653) Corticotropin-releasing factor-binding protein precursor|
           (CRF-binding protein) (CRF-BP) (Corticotropin-releasing
           hormone-binding protein) (CRH-BP)
          Length = 321

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 75  HSHGKCNFSLLWPFADLVLSIILATFN 155
           H H  C+FS+++P    +  + L  FN
Sbjct: 199 HQHRNCSFSIIYPVVIKIFDLTLGHFN 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,090,944
Number of Sequences: 219361
Number of extensions: 1078648
Number of successful extensions: 2648
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2648
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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