>B2_DAUCA (P37707) B2 protein|
          Length = 207

 Score = 65.9 bits (159), Expect = 2e-11
 Identities = 29/34 (85%), Positives = 33/34 (97%)
 Frame = -1

Query: 394 EDAFRPILHHYDGPKFRLELSITEALSLLDIFED 293
           ED+FRPILHHYDGPKFRLEL+I EA+SLLDIFE+
Sbjct: 171 EDSFRPILHHYDGPKFRLELNIPEAISLLDIFEE 204

>METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 761

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 340 ELSITEALSLLDIFEDKDDA**RLLSADQGTVEEGTACNKMDW 212
           E++   AL+LLD  +D ++A  +++  D+    EG    K DW
Sbjct: 575 EIAYQIALALLDEVKDLENAGIKVIQIDEPAFREGAPLKKRDW 617

>H6ST3_MOUSE (Q9QYK4) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)|
           (HS6ST-3) (mHS6ST-3)
          Length = 470

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 389 RIPPYPAPLRRAQVPARAQHHRGSLPP 309
           R P  P+P RRAQ P      R  LPP
Sbjct: 47  RPPAVPSPARRAQAPLDEWERRPQLPP 73

>VAL1_BCTV (P14991) AL1 protein (40.8 kDa protein)|
          Length = 358

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 36  P*QYISYVHEGSSSAAITTHYRQRGAHNFIAHEMENPIKLTY 161
           P +Y S + EG S    T   R  GAHN+I   ++  ++  Y
Sbjct: 212 PLRYNSIIVEGDSRTGKTMWARSLGAHNYITGHLDFSLRTYY 253

>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)|
           (HS6ST-3)
          Length = 471

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 383 PPYPAPLRRAQVPARAQHHRGSLPP 309
           P  P P RRAQ P      R  LPP
Sbjct: 49  PAVPGPARRAQAPPEEWERRPQLPP 73

>SYN_BACTN (Q8A0Z8) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 467

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 214 WSIHTYIRFISLSINGDI*VSFIGFSISWAMKLCA 110
           W I   + F  ++ N D+   FI + + WA+  CA
Sbjct: 246 WMIEPEVAFNDIADNMDLAEEFIKYCVKWALDNCA 280

>SYN_PORGI (Q7MVE5) Asparaginyl-tRNA synthetase (EC 6.1.1.22)|
           (Asparagine--tRNA ligase) (AsnRS)
          Length = 469

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 214 WSIHTYIRFISLSINGDI*VSFIGFSISWAMKLC 113
           W I   + F+ +  N D+   FI + + WA+  C
Sbjct: 248 WMIEPEVAFLEIEDNMDLAEEFIKYCVQWALDNC 281

>RSBW_BACHK (Q6HMH0) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 291 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 184
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>RSBW_BACCZ (Q63F14) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 291 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 184
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>RSBW_BACCR (Q81H23) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 291 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 184
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>RSBW_BACAN (Q9K5J7) Serine-protein kinase rsbW (EC 2.7.11.1) (Anti-sigma-B|
           factor) (Sigma-B negative effector rsbW)
          Length = 160

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = -2

Query: 291 RMMHDEGCSVLIRGLLRKEQRAIRWTGVYIHTYDLY 184
           ++MHDEG +VL+   +++EQ  +   G  I TY+ Y
Sbjct: 127 QIMHDEGMTVLMTKYIQREQ--VENDGNPISTYESY 160

>CCMA_BORBR (Q7WIP8) Cytochrome c biogenesis ATP-binding export protein ccmA|
           (EC 3.6.3.41) (Heme exporter protein A)
          Length = 224

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 258 IRGLLRKEQRAIRWTGVYIHTYDLYHYQLMVIY 160
           + GLLR  +  +RW G  IH  DL  Y L + Y
Sbjct: 53  LAGLLRPRRGEVRWNGADIHA-DLPGYYLHMAY 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,536,443
Number of Sequences: 219361
Number of extensions: 996559
Number of successful extensions: 2122
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2122
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)