>ZN133_HUMAN (P52736) Zinc finger protein 133|
          Length = 654

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
 Frame = -2

Query: 286 CMHQFSLPPTSLISGKHTHAGHSPWE--------GIKSMLGRFQ-WHGGEPPVL 152
           C H FS   T LIS + TH G  P+          +KS L R Q  H GE P++
Sbjct: 415 CGHSFSQNST-LISHRRTHTGEKPYVCGVCGRGFSLKSHLNRHQNIHSGEKPIV 467

>RL26_LITLI (Q95WA0) 60S ribosomal protein L26|
          Length = 144

 Score = 29.6 bits (65), Expect = 5.5
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 335 KRFKAADHAPAHANKKVYASIFTSSNKSDFRETYSCRSLPLGRN 204
           K  K   +AP+H  +K    I +S    + R+ Y+CRS+P+ ++
Sbjct: 13  KNRKRHFNAPSHMRRK----IMSSPMSKELRQKYNCRSMPIRKD 52

>YGCF_SHIFL (P64556) Hypothetical protein ygcF|
          Length = 223

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 105 ILELMGKPWYEANR*ISTGGSPPCHWNLPNIDLIPSQG 218
           +L ++G+  Y A   + TGG P  H  LP  DL+   G
Sbjct: 75  LLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNG 112

>YGCF_ECOLI (P64554) Hypothetical protein ygcF|
          Length = 223

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 105 ILELMGKPWYEANR*ISTGGSPPCHWNLPNIDLIPSQG 218
           +L ++G+  Y A   + TGG P  H  LP  DL+   G
Sbjct: 75  LLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNG 112

>YGCF_ECO57 (P64555) Hypothetical protein ygcF|
          Length = 223

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 105 ILELMGKPWYEANR*ISTGGSPPCHWNLPNIDLIPSQG 218
           +L ++G+  Y A   + TGG P  H  LP  DL+   G
Sbjct: 75  LLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNG 112

>RPH1_YEAST (P39956) DNA damage-responsive transcriptional repressor RPH1|
          Length = 796

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 377 EKLENGKKGEAAP--AKRFKAADHAPAHANKKV 285
           + + +G+K  + P   KRFK  DH   H NKK+
Sbjct: 729 KSVHSGEKPHSCPKCGKRFKRRDHVLQHLNKKI 761

>GIS1_YEAST (Q03833) Transcriptional activator/repressor GIS1|
          Length = 894

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -1

Query: 377 EKLENGKKGEAAP--AKRFKAADHAPAHANKKV 285
           + + +G+K  + P   KRFK  DH   H NKK+
Sbjct: 848 KSVHSGEKPHSCPRCGKRFKRRDHVLQHLNKKI 880

>FREM1_MOUSE (Q684R7) FRAS1-related extracellular matrix protein 1 precursor|
            (QBRICK protein)
          Length = 2191

 Score = 28.9 bits (63), Expect = 9.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
 Frame = -2

Query: 295  TRKCMHQFSLPPTSLISGKHTH-----AGHSP-WEGIKSM--LGRFQWHGGEP 161
            TR C  Q      +++S +H       +G  P W G+K+    G ++W GGEP
Sbjct: 2091 TRACREQHQGDLVTVLSRRHMQWLWAMSGRKPFWIGLKNQPRTGHWEWIGGEP 2143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,874,289
Number of Sequences: 219361
Number of extensions: 1231237
Number of successful extensions: 3097
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3093
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4142954952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)