ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart45a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470576.1| Oryza sativa (japonica cultivar-group), predic... 192 7e-46
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 192 7e-46
3gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome... 192 7e-46
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 192 7e-46
5emb|AL513303.11| Human DNA sequence from clone RP11-464C19 on ch... 42 1.6
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
7dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
8dbj|AP006417.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.6
9ref|NM_118428.2| Arabidopsis thaliana unknown protein AT4G22990 ... 40 6.5
10gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.5
11gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
12ref|XM_538481.2| PREDICTED: Canis familiaris similar to Tumor-as... 40 6.5
13emb|X77160.1|PAAMIB Pseudomonas aeruginosa (PAC1) amiB gene 40 6.5
14emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, ... 40 6.5
15emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BA... 40 6.5
16gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Can... 40 6.5
17gb|AF116463.2|AF116463 Streptomyces lincolnensis putative oxidor... 40 6.5
18gb|AY056374.1| Arabidopsis thaliana AT4g22990/F7H19_170 mRNA, co... 40 6.5
19gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.5
20dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
21dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
22dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
24dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
25gb|AE004758.1| Pseudomonas aeruginosa PAO1, section 319 of 529 o... 40 6.5
26gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 6.5
27gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
28emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.5
29dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome 40 6.5
30dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
31dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
32dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
33dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
34dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
35dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.5
36dbj|AK108933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.5
37emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 40 6.5
38gb|AF170704.1|AF170704 Streptomyces spectabilis SpcC (spcC) gene... 40 6.5
39gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.5
40gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.5
41emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E... 40 6.5 
>ref|XM_470576.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1254

 Score =  192 bits (97), Expect = 7e-46
 Identities = 136/149 (91%)
 Strand = Plus / Minus

                                                                        
Query: 331  ctagaaggcggcggccctgtccttgacgacgacgtcctccacctcccgccgcatgagctt 390
            ||||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct: 1254 ctagaaggcagctgccctgtccttgacgacgacgtcctcgacctccctcctcatgagctt 1195

                                                                        
Query: 391  ctcctcgtgctgcctccggcagaacaccacccatgcgttcacctccagcgccacgcagcc 450
            |||||| |||||||||| |||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 1194 ctcctcctgctgcctcctgcagaagacgacccaggcgttcacctccagcgccacgcagcc 1135

                                         
Query: 451  gccgacgagcgtcgccagcgccatgcagt 479
            |||| | ||||| ||||||||||||||||
Sbjct: 1134 gccggccagcgtggccagcgccatgcagt 1106
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  192 bits (97), Expect = 7e-46
 Identities = 136/149 (91%)
 Strand = Plus / Plus

                                                                           
Query: 331     ctagaaggcggcggccctgtccttgacgacgacgtcctccacctcccgccgcatgagctt 390
               ||||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct: 4870638 ctagaaggcagctgccctgtccttgacgacgacgtcctcgacctccctcctcatgagctt 4870697

                                                                           
Query: 391     ctcctcgtgctgcctccggcagaacaccacccatgcgttcacctccagcgccacgcagcc 450
               |||||| |||||||||| |||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 4870698 ctcctcctgctgcctcctgcagaagacgacccaggcgttcacctccagcgccacgcagcc 4870757

                                            
Query: 451     gccgacgagcgtcgccagcgccatgcagt 479
               |||| | ||||| ||||||||||||||||
Sbjct: 4870758 gccggccagcgtggccagcgccatgcagt 4870786



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     tgacgacgacgtcctccacc 373
               ||||||||||||||||||||
Sbjct: 2456744 tgacgacgacgtcctccacc 2456725
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>gb|AC105731.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0064E16,
              complete sequence
          Length = 159092

 Score =  192 bits (97), Expect = 7e-46
 Identities = 136/149 (91%)
 Strand = Plus / Minus

                                                                          
Query: 331    ctagaaggcggcggccctgtccttgacgacgacgtcctccacctcccgccgcatgagctt 390
              ||||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct: 124909 ctagaaggcagctgccctgtccttgacgacgacgtcctcgacctccctcctcatgagctt 124850

                                                                          
Query: 391    ctcctcgtgctgcctccggcagaacaccacccatgcgttcacctccagcgccacgcagcc 450
              |||||| |||||||||| |||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 124849 ctcctcctgctgcctcctgcagaagacgacccaggcgttcacctccagcgccacgcagcc 124790

                                           
Query: 451    gccgacgagcgtcgccagcgccatgcagt 479
              |||| | ||||| ||||||||||||||||
Sbjct: 124789 gccggccagcgtggccagcgccatgcagt 124761
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  192 bits (97), Expect = 7e-46
 Identities = 136/149 (91%)
 Strand = Plus / Plus

                                                                           
Query: 331     ctagaaggcggcggccctgtccttgacgacgacgtcctccacctcccgccgcatgagctt 390
               ||||||||| || |||||||||||||||||||||||||| ||||||| || |||||||||
Sbjct: 4869853 ctagaaggcagctgccctgtccttgacgacgacgtcctcgacctccctcctcatgagctt 4869912

                                                                           
Query: 391     ctcctcgtgctgcctccggcagaacaccacccatgcgttcacctccagcgccacgcagcc 450
               |||||| |||||||||| |||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 4869913 ctcctcctgctgcctcctgcagaagacgacccaggcgttcacctccagcgccacgcagcc 4869972

                                            
Query: 451     gccgacgagcgtcgccagcgccatgcagt 479
               |||| | ||||| ||||||||||||||||
Sbjct: 4869973 gccggccagcgtggccagcgccatgcagt 4870001



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 354     tgacgacgacgtcctccacc 373
               ||||||||||||||||||||
Sbjct: 2456854 tgacgacgacgtcctccacc 2456835
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>emb|AL513303.11| Human DNA sequence from clone RP11-464C19 on chromosome 10 Contains
            the 5' end of the COPEB gene for core promoter element
            binding protein (GBF ZF9 Zf9 BCD1 CPBP KLF6), two novel
            genes and a CpG island, complete sequence
          Length = 187833

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 80   aggagaagaaaaacagtggag 100
            |||||||||||||||||||||
Sbjct: 5819 aggagaagaaaaacagtggag 5799
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 82       gagaagaaaaacagtggagta 102
                |||||||||||||||||||||
Sbjct: 20954186 gagaagaaaaacagtggagta 20954206
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>dbj|AP004876.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0470G10
          Length = 145419

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 82    gagaagaaaaacagtggagta 102
             |||||||||||||||||||||
Sbjct: 77658 gagaagaaaaacagtggagta 77678
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>dbj|AP006417.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT05D12, TM0303,
             complete sequence
          Length = 123806

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    taggagaagaaaaacagtgga 99
             |||||||||||||||||||||
Sbjct: 68807 taggagaagaaaaacagtgga 68827
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>ref|NM_118428.2| Arabidopsis thaliana unknown protein AT4G22990 mRNA, complete cds
          Length = 2429

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  atcaagaactaggagaagaa 89
           ||||||||||||||||||||
Sbjct: 230 atcaagaactaggagaagaa 249
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 442     cacgcagccgccgacgagcg 461
               ||||||||||||||||||||
Sbjct: 2701886 cacgcagccgccgacgagcg 2701905
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>gb|AC079356.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0016H04,
              complete sequence
          Length = 176678

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    gacgacgacgtcctccacct 374
              ||||||||||||||||||||
Sbjct: 145159 gacgacgacgtcctccacct 145140
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>ref|XM_538481.2| PREDICTED: Canis familiaris similar to Tumor-associated calcium
           signal transducer 1 precursor (Major gastrointestinal
           tumor-associated protein GA733-2) (Epithelial cell
           surface antigen) (Epithelial glycoprotein) (EGP)
           (Adenocarcinoma-associated antigen) (KSA) (KS 1/4
           antigen)... (LOC481360), mRNA
          Length = 1771

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 395 tcgtgctgcctccggcagaa 414
           ||||||||||||||||||||
Sbjct: 333 tcgtgctgcctccggcagaa 352
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>emb|X77160.1|PAAMIB Pseudomonas aeruginosa (PAC1) amiB gene
          Length = 1212

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 453 cgacgagcgtcgccagcgcc 472
           ||||||||||||||||||||
Sbjct: 768 cgacgagcgtcgccagcgcc 787
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>emb|AL161558.2|ATCHRIV58 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 58
          Length = 193550

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    atcaagaactaggagaagaa 89
             ||||||||||||||||||||
Sbjct: 93524 atcaagaactaggagaagaa 93505
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>emb|AL031018.1|ATF7H19 Arabidopsis thaliana DNA chromosome 4, BAC clone F7H19 (ESSA project)
          Length = 139316

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 70    atcaagaactaggagaagaa 89
             ||||||||||||||||||||
Sbjct: 64437 atcaagaactaggagaagaa 64418
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>gb|AC018898.17| Homo sapiens 3 BAC RP11-178K17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 170606

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aaaaagtggaacaacttgta 29
             ||||||||||||||||||||
Sbjct: 89187 aaaaagtggaacaacttgta 89168
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>gb|AF116463.2|AF116463 Streptomyces lincolnensis putative oxidoreductase gene, partial cds;
            putative secreted protein, putative DNA binding protein,
            hypothetical proteins, and putative regulatory protein
            WdlA (wdlA) genes, complete cds; and hypothetical protein
            gene, partial cds
          Length = 7152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 356  acgacgacgtcctccacctc 375
            ||||||||||||||||||||
Sbjct: 5569 acgacgacgtcctccacctc 5588
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>gb|AY056374.1| Arabidopsis thaliana AT4g22990/F7H19_170 mRNA, complete cds
          Length = 2428

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 70  atcaagaactaggagaagaa 89
           ||||||||||||||||||||
Sbjct: 229 atcaagaactaggagaagaa 248
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 448    gccgccgacgagcgtcgccagcgc 471
              |||| |||||||||||||||||||
Sbjct: 513176 gccggcgacgagcgtcgccagcgc 513199
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 354     tgacgacgacgtcctccacc 373
               ||||||||||||||||||||
Sbjct: 5410768 tgacgacgacgtcctccacc 5410787
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 79      taggagaagaaaaacagtggagta 102
               ||||||||| ||||||||||||||
Sbjct: 1227717 taggagaagtaaaacagtggagta 1227694
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 79      taggagaagaaaaacagtggagta 102
               ||||||||| ||||||||||||||
Sbjct: 5256815 taggagaagtaaaacagtggagta 5256792
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5,
              complete sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 355    gacgacgacgtcctccacct 374
              ||||||||||||||||||||
Sbjct: 627760 gacgacgacgtcctccacct 627741
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 365      tcctccacctcccgccgcat 384
                ||||||||||||||||||||
Sbjct: 35860670 tcctccacctcccgccgcat 35860651
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>gb|AE004758.1| Pseudomonas aeruginosa PAO1, section 319 of 529 of the complete
            genome
          Length = 10453

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 453  cgacgagcgtcgccagcgcc 472
            ||||||||||||||||||||
Sbjct: 9711 cgacgagcgtcgccagcgcc 9692
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 453     cgacgagcgtcgccagcgcc 472
               ||||||||||||||||||||
Sbjct: 4119869 cgacgagcgtcgccagcgcc 4119850
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>gb|AC119796.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1172F09,
             complete sequence
          Length = 106057

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   tgacgacgacgtcctccacc 373
             ||||||||||||||||||||
Sbjct: 29240 tgacgacgacgtcctccacc 29221
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>emb|AL845348.4|CNS08CBA Oryza sativa chromosome 12, . BAC OSJNBb0070A23 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 105645

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 354   tgacgacgacgtcctccacc 373
             ||||||||||||||||||||
Sbjct: 82785 tgacgacgacgtcctccacc 82804
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>dbj|BA000004.3| Bacillus halodurans C-125 DNA, complete genome
          Length = 4202352

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 73      aagaactaggagaagaaaaa 92
               ||||||||||||||||||||
Sbjct: 1303150 aagaactaggagaagaaaaa 1303131
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>dbj|AP003848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1715_A07
          Length = 130907

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     taggagaagaaaaacagtggagta 102
              ||||||||| ||||||||||||||
Sbjct: 123529 taggagaagtaaaacagtggagta 123506
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>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1203H11
          Length = 156561

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     taggagaagaaaaacagtggagta 102
              ||||||||| ||||||||||||||
Sbjct: 140954 taggagaagtaaaacagtggagta 140931
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>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0073J19
          Length = 165174

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    taggagaagaaaaacagtggagta 102
             ||||||||| ||||||||||||||
Sbjct: 57024 taggagaagtaaaacagtggagta 57001
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>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0506B12
          Length = 170759

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    tcctccacctcccgccgcat 384
              ||||||||||||||||||||
Sbjct: 125128 tcctccacctcccgccgcat 125109
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>dbj|AP004379.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0589E08
          Length = 138416

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    taggagaagaaaaacagtggagta 102
             ||||||||| ||||||||||||||
Sbjct: 55578 taggagaagtaaaacagtggagta 55555
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>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0091F23
          Length = 147699

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    taggagaagaaaaacagtggagta 102
             ||||||||| ||||||||||||||
Sbjct: 94796 taggagaagtaaaacagtggagta 94773
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>dbj|AK108933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A09, full
           insert sequence
          Length = 1520

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 355 gacgacgacgtcctccacct 374
           ||||||||||||||||||||
Sbjct: 526 gacgacgacgtcctccacct 545
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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 435    ccagcgccacgcagccgccg 454
              ||||||||||||||||||||
Sbjct: 232612 ccagcgccacgcagccgccg 232631
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>gb|AF170704.1|AF170704 Streptomyces spectabilis SpcC (spcC) gene, partial cds; SpcB (spcB),
            SpcA (spcA), SpcT (spcT), SpcN (spcN), and SpcZ (spcZ)
            genes, complete cds; and unknown gene, partial cds
          Length = 6682

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 296  cggcgccgatcatggcgcggcgcg 319
            |||||||||||||| |||||||||
Sbjct: 2986 cggcgccgatcatgacgcggcgcg 2963
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 427    gttcacctccagcgccacgc 446
              ||||||||||||||||||||
Sbjct: 605387 gttcacctccagcgccacgc 605368
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 354     tgacgacgacgtcctccacc 373
               ||||||||||||||||||||
Sbjct: 5410757 tgacgacgacgtcctccacc 5410776
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>emb|BX664711.2|CNS09SC1 Oryza sativa chromosome 12, . BAC B1001E08 of chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 141841

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   tgacgacgacgtcctccacc 373
             ||||||||||||||||||||
Sbjct: 55040 tgacgacgacgtcctccacc 55021


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,703,941
Number of Sequences: 3902068
Number of extensions: 3703941
Number of successful extensions: 70749
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70023
Number of HSP's gapped (non-prelim): 726
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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