ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TIP32_ORYSA (Q7XKI5) Probable aquaporin TIP3.2 (Tonoplast intrin... 32 0.78
2TRMD_THEMA (Q9X1Q5) tRNA (guanine-N(1)-)-methyltransferase (EC 2... 30 2.3
3TIP31_ORYSA (Q9FWV6) Probable aquaporin TIP3.1 (Tonoplast intrin... 30 2.3
4STTP1_HUMAN (Q6IA86) Stat3-interacting protein (StIP1) (SHINC-2) 29 5.0
5SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (P... 29 5.0
6TIPA_PHAVU (P23958) Probable aquaporin TIP-type alpha (Tonoplast... 29 6.6

>TIP32_ORYSA (Q7XKI5) Probable aquaporin TIP3.2 (Tonoplast intrinsic protein|
           3.2) (OsTIP3.2)
          Length = 265

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 362 LAGWDWKRHWGCWLGRTI 309
           L GW+W+ HW  WLG  I
Sbjct: 214 LVGWNWRHHWVYWLGPLI 231



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>TRMD_THEMA (Q9X1Q5) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)|
           (M1G-methyltransferase) (tRNA [GM37] methyltransferase)
          Length = 245

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = -2

Query: 448 GSMPAMLVLAGVIFLLGGIVEELPLTTESWLXXXXXXXXXXXXXGPFS----RFVGVVLC 281
           G +PAM++   V+ L+ G+VE   +  ES+               P+     +   V+L 
Sbjct: 139 GELPAMVITDAVVRLVPGVVERESVERESF---HQGLLDHPVYTRPYEYKGMKVPDVLLS 195

Query: 280 GSG*KL-CYRRRSMPKTTMVSVDDVFLLKDIFE 185
           G   K+  +RR+   K T+    D+FL K++ E
Sbjct: 196 GDHEKVELWRRKESIKKTLAKRPDLFLAKELDE 228



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>TIP31_ORYSA (Q9FWV6) Probable aquaporin TIP3.1 (Tonoplast intrinsic protein|
           3.1) (OsTIP3.1)
          Length = 264

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 362 LAGWDWKRHWGCWLG 318
           L GW W+ HW  WLG
Sbjct: 213 LVGWRWRHHWVYWLG 227



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>STTP1_HUMAN (Q6IA86) Stat3-interacting protein (StIP1) (SHINC-2)|
          Length = 826

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -1

Query: 350 DWKR--HWGCWLGRTILKVRWS--CLVRIWVKALLSTEVDAEDNDGV 222
           DW R   W  + GR +     S  CL+RIW   + ST ++ +D+D +
Sbjct: 208 DWIRGVEWAAF-GRDLFLASCSQDCLIRIWKLYIKSTSLETQDDDNI 253



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>SAYP_DROME (Q9VWF2) Supporter of activation of yellow protein (Protein enhancer|
            of yellow 3)
          Length = 2006

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 26/127 (20%), Positives = 46/127 (36%)
 Frame = +1

Query: 64   EENQAENHITRNK*RKNHRYNTNIPPPPMTTCVQNNSEQDLQRCL*EGKHHQLTPSLSSA 243
            ++N  ENH+ R     N   ++ +PP        + ++Q  Q C       + + SL + 
Sbjct: 746  QDNNNENHLKRTNSEGNESPSSRLPPSKQRRLDNDENDQQTQNC--HDPARKCSESLQAL 803

Query: 244  STSVDNKAFTQIXXXXXXXXXXMVRPSQQPQCRFQSQPARTRW*EAALLQCLQGEK*RPQ 423
              S  ++               +  P+QQ       Q         AL   ++GE  + Q
Sbjct: 804  PPSHRSRKQKHERILNTDLEGSLFPPTQQQSISTPDQ-------NGALSSEVEGEDAKAQ 856

Query: 424  APTLPAS 444
             P  PA+
Sbjct: 857  DPLEPAT 863



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>TIPA_PHAVU (P23958) Probable aquaporin TIP-type alpha (Tonoplast intrinsic|
           protein alpha) (Alpha TIP)
          Length = 256

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 362 LAGWDWKRHWGCWLG 318
           L GW W +HW  W+G
Sbjct: 208 LVGWQWHQHWIFWVG 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,864,870
Number of Sequences: 219361
Number of extensions: 1214043
Number of successful extensions: 2873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2872
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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