ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44h05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC113416.2| Homo sapiens chromosome 5 clone RP11-560F8, compl... 46 0.10
2gb|AC166061.2| Mus musculus BAC clone RP23-177N16 from chromosom... 46 0.10
3gb|AY915300.1| Schistosoma japonicum SJCHGC04424 protein mRNA, p... 44 0.40
4gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, compl... 44 0.40
5gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complet... 44 0.40
6gb|AE001402.1| Plasmodium falciparum 3D7 chromosome 2 section 39... 42 1.6
7gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, co... 42 1.6
8gb|AF452048.1| Pyrocoelia rufa mitochondrion, complete genome 42 1.6
9ref|XM_720947.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 1.6
10gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3... 42 1.6
11emb|BX248584.1| Blochmannia floridanus complete genome; segment 1/3 42 1.6
12gb|AC154303.2| Mus musculus BAC clone RP23-387F19 from chromosom... 42 1.6
13emb|AL929371.6| Mouse DNA sequence from clone RP23-176O5 on chro... 42 1.6
14gb|AC099047.2| Homo sapiens chromosome 3 clone RP11-73I17, compl... 42 1.6
15dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16gb|AC131013.2| Homo sapiens 3 BAC RP13-584I6 (Roswell Park Cance... 42 1.6
17dbj|AP003449.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
18emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chro... 42 1.6
19gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, co... 40 6.2
20gb|AC168206.7| Mus musculus chromosome 1, clone RP23-17B20, comp... 40 6.2
21gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
22gb|AC099582.7| Mus musculus chromosome 1, clone RP23-188D7, comp... 40 6.2
23gb|AY574270.1| 'Chlorella' ellipsoidea nitrite reductase mRNA, c... 40 6.2
24gb|AC132835.7| Mus musculus chromosome 1, clone RP24-490C20, com... 40 6.2
25gb|AC008234.9| Drosophila melanogaster clone BACR32M04, complete... 40 6.2
26gb|AY814304.1| Schistosoma japonicum SJCHGC04105 protein mRNA, c... 40 6.2
27gb|AC139939.6| Mus musculus chromosome 1, clone RP23-458O23, com... 40 6.2
28gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosom... 40 6.2
29gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosom... 40 6.2
30ref|XM_814519.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 6.2
31ref|XM_961178.1| Plasmodium falciparum 3D7 hypothetical protein ... 40 6.2
32gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complet... 40 6.2
33gb|AC162035.5| Mus musculus chromosome 18, clone RP23-434N7, com... 40 6.2
34gb|AC112677.8| Mus musculus chromosome 3, clone RP23-176J23, com... 40 6.2
35gb|AC127429.25| Medicago truncatula clone mth2-9o20, complete se... 40 6.2
36gb|BC093005.1| Homo sapiens speedy homolog A (Drosophila), mRNA ... 40 6.2
37emb|AL513185.12| Human DNA sequence from clone RP11-167P22 on ch... 40 6.2
38emb|AL512368.9| Human DNA sequence from clone RP11-387L5 on chro... 40 6.2
39ref|NM_182756.2| Homo sapiens speedy homolog A (Drosophila) (SPD... 40 6.2
40emb|AL135780.11| Human DNA sequence from clone RP3-375M21 on chr... 40 6.2
41emb|Z69728.1|SPAC56F8 S.pombe chromosome I cosmid c56F8 40 6.2
42emb|CR382401.1| Plasmodium falciparum chromosome 6, complete seq... 40 6.2
43emb|AL929354.1|PFA929354 Plasmodium falciparum strain 3D7, chrom... 40 6.2
44emb|AL391603.1|SPBC29B5 S.pombe chromosome II cosmid c29B5 40 6.2
45emb|AL132972.1|ATT25B15 Arabidopsis thaliana DNA chromosome 3, B... 40 6.2
46emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BA... 40 6.2
47emb|AL645855.25| Mouse DNA sequence from clone RP23-122N23 on ch... 40 6.2
48gb|AC120797.9| Mus musculus chromosome 18, clone RP24-81D18, com... 40 6.2
49gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Ca... 40 6.2
50gb|AC175311.1| Medicago truncatula clone mth2-45n8, complete seq... 40 6.2
51gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete se... 40 6.2
52gb|AC093217.4| Homo sapiens chromosome 5 clone CTD-2120M21, comp... 40 6.2
53gb|AC073369.5| Homo sapiens chromosome 10 clone RP11-466H6, comp... 40 6.2
54gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, com... 40 6.2
55ref|XM_684477.1| PREDICTED: Danio rerio similar to Formin 1 isof... 40 6.2
56gb|AC090989.8| Homo sapiens chromosome 18, clone RP11-265C19, co... 40 6.2
57emb|CR318586.3| Zebrafish DNA sequence from clone CH211-239O22 i... 40 6.2
58ref|NM_001021549.1| Schizosaccharomyces pombe 972h- hypothetical... 40 6.2
59dbj|AK033814.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 6.2
60gb|AC022211.5|AC022211 Homo sapiens BAC clone RP11-649A18 from 1... 40 6.2
61gb|AC010581.3|AC010581 Drosophila melanogaster, chromosome 3R, r... 40 6.2
62dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
63gb|AC097720.5| Homo sapiens BAC clone RP11-1422N15 from 2, compl... 40 6.2
64gb|AC156938.3| Mus musculus BAC clone RP23-314M12 from chromosom... 40 6.2
65gb|AY166803.1| Phoenix dactylifera NADH dehydrogenase subunit A ... 40 6.2
66emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chr... 40 6.2
67emb|BX248136.12| Zebrafish DNA sequence from clone DKEY-81B15 in... 40 6.2
68emb|CT476810.5| Zebrafish DNA sequence from clone ZFOS-260D6 in ... 40 6.2
69gb|AE003682.4| Drosophila melanogaster chromosome 3R, section 20... 40 6.2
70emb|BX001021.7| Zebrafish DNA sequence from clone BUSM1-140K9 in... 40 6.2
71emb|BX293563.9| Mouse DNA sequence from clone RP23-379K6 on chro... 40 6.2
72emb|AL772352.8| Mouse DNA sequence from clone RP23-147F6 on chro... 40 6.2
73emb|AJ509355.1|AME509355 Apis mellifera microsatellite marker Am... 40 6.2
74emb|AL845299.13| Mouse DNA sequence from clone RP23-375N8 on chr... 40 6.2
75gb|BC047224.1| Homo sapiens cDNA clone IMAGE:5272725, containing... 40 6.2
76emb|CT009685.18| Pig DNA sequence from clone CH242-172A22 on chr... 40 6.2
77emb|AL840641.22| Zebrafish DNA sequence from clone DKEY-37O8, co... 40 6.2
78emb|AJ292274.1|NSY292274 Nicotiana sylvestris DNA flanking T-DNA... 40 6.2
79emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chro... 40 6.2
80emb|AL136308.4| Human DNA sequence from clone RP3-382L22 on chro... 40 6.2
81dbj|D83993.1|YSP972HB Fission yeast DNA for chromosome II cosmid... 40 6.2
82emb|AL669824.13| Mouse DNA sequence from clone RP23-396G1 on chr... 40 6.2 
>gb|AC113416.2| Homo sapiens chromosome 5 clone RP11-560F8, complete sequence
          Length = 190848

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 82     aatcatataactagaaataaata 104
              |||||||||||||||||||||||
Sbjct: 144552 aatcatataactagaaataaata 144530
to top
>gb|AC166061.2| Mus musculus BAC clone RP23-177N16 from chromosome 14, complete
             sequence
          Length = 213071

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 81    aaatcatataactagaaataaataaag 107
             ||||||||||| |||||||||||||||
Sbjct: 73046 aaatcatataaatagaaataaataaag 73072
to top
>gb|AY915300.1| Schistosoma japonicum SJCHGC04424 protein mRNA, partial cds
          Length = 711

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 93  tagaaataaataaagaaaaaac 114
           ||||||||||||||||||||||
Sbjct: 497 tagaaataaataaagaaaaaac 476
to top
>gb|AC145856.2| Pan troglodytes BAC clone RP43-5P12 from 7, complete sequence
          Length = 185183

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 80     aaaatcatataactagaaataa 101
              ||||||||||||||||||||||
Sbjct: 156773 aaaatcatataactagaaataa 156794
to top
>gb|AC004870.2| Homo sapiens PAC clone RP4-739M23 from 7, complete sequence
          Length = 144546

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 80    aaaatcatataactagaaataa 101
             ||||||||||||||||||||||
Sbjct: 99155 aaaatcatataactagaaataa 99134
to top
>gb|AE001402.1| Plasmodium falciparum 3D7 chromosome 2 section 39 of 73 of the complete
             sequence
          Length = 17470

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    tagaaataaataaagaaaaaa 113
             |||||||||||||||||||||
Sbjct: 14526 tagaaataaataaagaaaaaa 14506
to top
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence
          Length = 232199

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    tagaaataaataaagaaaaaa 113
             |||||||||||||||||||||
Sbjct: 45674 tagaaataaataaagaaaaaa 45694
to top
>gb|AF452048.1| Pyrocoelia rufa mitochondrion, complete genome
          Length = 17739

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 94    agaaataaataaagaaaaaac 114
             |||||||||||||||||||||
Sbjct: 13813 agaaataaataaagaaaaaac 13833
to top
>ref|XM_720947.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05568)
           partial mRNA
          Length = 285

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 92  ctagaaataaataaagaaaaa 112
           |||||||||||||||||||||
Sbjct: 79  ctagaaataaataaagaaaaa 59
to top
>gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete
             sequence
          Length = 252632

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 90    aactagaaataaataaagaaa 110
             |||||||||||||||||||||
Sbjct: 81567 aactagaaataaataaagaaa 81547
to top
>emb|BX248584.1| Blochmannia floridanus complete genome; segment 1/3
          Length = 250050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 93     tagaaataaataaagaaaaaa 113
              |||||||||||||||||||||
Sbjct: 160566 tagaaataaataaagaaaaaa 160546
to top
>gb|AC154303.2| Mus musculus BAC clone RP23-387F19 from chromosome 14, complete
             sequence
          Length = 199995

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 93    tagaaataaataaagaaaaaa 113
             |||||||||||||||||||||
Sbjct: 65403 tagaaataaataaagaaaaaa 65423
to top
>emb|AL929371.6| Mouse DNA sequence from clone RP23-176O5 on chromosome 11 Contains a
              ribosomal protein S2 (Rps2) pseudogene, a novel gene, an
              apurinic/apyrimidinic endonuclease 2 (Apex2) pseudogene,
              the Rtn4 gene for reticulon 4, the 3' end of the gene for a
              novel protein (C230094A16Rik) (MGC38936) and a CpG island,
              complete sequence
          Length = 212042

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    ggtggtgagaggcagctcttc 388
              |||||||||||||||||||||
Sbjct: 191585 ggtggtgagaggcagctcttc 191605
to top
>gb|AC099047.2| Homo sapiens chromosome 3 clone RP11-73I17, complete sequence
          Length = 184296

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 93     tagaaataaataaagaaaaaa 113
              |||||||||||||||||||||
Sbjct: 130724 tagaaataaataaagaaaaaa 130744
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 30       agaggaaaaagaaatacagag 50
                |||||||||||||||||||||
Sbjct: 19511103 agaggaaaaagaaatacagag 19511083
to top
>gb|AC131013.2| Homo sapiens 3 BAC RP13-584I6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 77997

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 93    tagaaataaataaagaaaaaa 113
             |||||||||||||||||||||
Sbjct: 58314 tagaaataaataaagaaaaaa 58294
to top
>dbj|AP003449.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0086A10
          Length = 151071

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 30     agaggaaaaagaaatacagag 50
              |||||||||||||||||||||
Sbjct: 119919 agaggaaaaagaaatacagag 119899
to top
>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
              sequence
          Length = 168798

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 85     catataactagaaataaataa 105
              |||||||||||||||||||||
Sbjct: 141438 catataactagaaataaataa 141418
to top
>gb|AC102303.10| Mus musculus chromosome 1, clone RP24-403I11, complete sequence
          Length = 162813

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    caaggagaaaaatgacgccc 419
              ||||||||||||||||||||
Sbjct: 104250 caaggagaaaaatgacgccc 104231
to top
>gb|AC168206.7| Mus musculus chromosome 1, clone RP23-17B20, complete sequence
          Length = 245358

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ggaaaaagaaatacagagtg 52
              ||||||||||||||||||||
Sbjct: 234136 ggaaaaagaaatacagagtg 234155
to top
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0111O13, complete sequence
          Length = 126332

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    agaaataaataaagaaaaaa 113
             ||||||||||||||||||||
Sbjct: 92818 agaaataaataaagaaaaaa 92837
to top
>gb|AC099582.7| Mus musculus chromosome 1, clone RP23-188D7, complete sequence
          Length = 192016

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ggaaaaagaaatacagagtg 52
             ||||||||||||||||||||
Sbjct: 44860 ggaaaaagaaatacagagtg 44841
to top
>gb|AY574270.1| 'Chlorella' ellipsoidea nitrite reductase mRNA, complete cds
          Length = 2344

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 431 cattgccggcatcgaccccc 450
           ||||||||||||||||||||
Sbjct: 766 cattgccggcatcgaccccc 785
to top
>gb|AC132835.7| Mus musculus chromosome 1, clone RP24-490C20, complete sequence
          Length = 148948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     agaaataaataaagaaaaaa 113
              ||||||||||||||||||||
Sbjct: 120788 agaaataaataaagaaaaaa 120769
to top
>gb|AC008234.9| Drosophila melanogaster clone BACR32M04, complete sequence
          Length = 148847

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    aaataaagaaaaaaccaccg 119
              ||||||||||||||||||||
Sbjct: 126012 aaataaagaaaaaaccaccg 125993
to top
>gb|AY814304.1| Schistosoma japonicum SJCHGC04105 protein mRNA, complete cds
          Length = 650

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  agaaataaataaagaaaaaa 113
           ||||||||||||||||||||
Sbjct: 358 agaaataaataaagaaaaaa 339
to top
>gb|AC139939.6| Mus musculus chromosome 1, clone RP23-458O23, complete sequence
          Length = 175033

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     agaaataaataaagaaaaaa 113
              ||||||||||||||||||||
Sbjct: 172478 agaaataaataaagaaaaaa 172497
to top
>gb|AC127250.3| Mus musculus BAC clone RP24-482H23 from chromosome 3, complete
            sequence
          Length = 136942

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 50   gtggttctatttatgaggaaaaccaggc 77
            ||||||||  ||||||||||||||||||
Sbjct: 8737 gtggttcttgttatgaggaaaaccaggc 8764
to top
>gb|AC132616.2| Mus musculus BAC clone RP23-317F10 from chromosome 14, complete
             sequence
          Length = 213684

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    tcatataactagaaataaat 103
             ||||||||||||||||||||
Sbjct: 96401 tcatataactagaaataaat 96382
to top
>ref|XM_814519.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510303.250) partial mRNA
          Length = 1701

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 231 gttgtcttcggcatcgacct 250
           ||||||||||||||||||||
Sbjct: 219 gttgtcttcggcatcgacct 238
to top
>ref|XM_961178.1| Plasmodium falciparum 3D7 hypothetical protein (PFF1400w) partial
            mRNA
          Length = 4131

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   agaaataaataaagaaaaaa 113
            ||||||||||||||||||||
Sbjct: 3318 agaaataaataaagaaaaaa 3337
to top
>gb|AC004894.1| Homo sapiens PAC clone RP4-808G16 from 7, complete sequence
          Length = 164511

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  ctccaacgaaccttgagaat 311
            ||||||||||||||||||||
Sbjct: 5853 ctccaacgaaccttgagaat 5872
to top
>gb|AC162035.5| Mus musculus chromosome 18, clone RP23-434N7, complete sequence
          Length = 200472

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    agaggcagctcttctacaat 394
              ||||||||||||||||||||
Sbjct: 183538 agaggcagctcttctacaat 183519
to top
>gb|AC112677.8| Mus musculus chromosome 3, clone RP23-176J23, complete sequence
          Length = 215247

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 50    gtggttctatttatgaggaaaaccaggc 77
             ||||||||  ||||||||||||||||||
Sbjct: 45766 gtggttcttgttatgaggaaaaccaggc 45739
to top
>gb|AC127429.25| Medicago truncatula clone mth2-9o20, complete sequence
          Length = 130703

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   aagaaggaaaacatcatcaa 219
             ||||||||||||||||||||
Sbjct: 36068 aagaaggaaaacatcatcaa 36087
to top
>gb|BC093005.1| Homo sapiens speedy homolog A (Drosophila), mRNA (cDNA clone
            MGC:110856 IMAGE:4839330), complete cds
          Length = 1756

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   gaaataaataaagaaaaaac 114
            ||||||||||||||||||||
Sbjct: 1653 gaaataaataaagaaaaaac 1634
to top
>emb|AL513185.12| Human DNA sequence from clone RP11-167P22 on chromosome 10 Contains the
             5' end of the CBARA1 gene for calcium binding
             atopy-related autoantigen 1, an HMG17 pseudogene, a
             cytochrome c oxidase subunit VIIc (COX7C) pseudogene, a
             novel gene, a novel pseudogene (FLJ12684) and a CpG
             island, complete sequence
          Length = 163632

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    atataactagaaataaataa 105
             ||||||||||||||||||||
Sbjct: 40076 atataactagaaataaataa 40095
to top
>emb|AL512368.9| Human DNA sequence from clone RP11-387L5 on chromosome 6, complete
             sequence
          Length = 147619

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    atcatataactagaaataaa 102
             ||||||||||||||||||||
Sbjct: 53116 atcatataactagaaataaa 53097
to top
>ref|NM_182756.2| Homo sapiens speedy homolog A (Drosophila) (SPDYA), transcript
            variant 2, mRNA
          Length = 1813

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   gaaataaataaagaaaaaac 114
            ||||||||||||||||||||
Sbjct: 1710 gaaataaataaagaaaaaac 1691
to top
>emb|AL135780.11| Human DNA sequence from clone RP3-375M21 on chromosome 6q14.1-15,
             complete sequence
          Length = 116878

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 80    aaaatcatataactagaaataaat 103
             ||||||||||| ||||||||||||
Sbjct: 74118 aaaatcatatagctagaaataaat 74095
to top
>emb|Z69728.1|SPAC56F8 S.pombe chromosome I cosmid c56F8
          Length = 37093

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gccgaaaatcatataactag 95
             ||||||||||||||||||||
Sbjct: 24492 gccgaaaatcatataactag 24473
to top
>emb|CR382401.1| Plasmodium falciparum chromosome 6, complete sequence; segment 4/5
          Length = 337203

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 94     agaaataaataaagaaaaaa 113
              ||||||||||||||||||||
Sbjct: 147461 agaaataaataaagaaaaaa 147480
to top
>emb|AL929354.1|PFA929354 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4
          Length = 340552

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 22     tttcattaagaggaaaaagaaata 45
              ||||||||||| ||||||||||||
Sbjct: 149631 tttcattaagatgaaaaagaaata 149654
to top
>emb|AL391603.1|SPBC29B5 S.pombe chromosome II cosmid c29B5
          Length = 14147

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   ataatagtgagcaagatcttcaaa 190
             ||||| ||||||||||||||||||
Sbjct: 12445 ataatggtgagcaagatcttcaaa 12422
to top
>emb|AL132972.1|ATT25B15 Arabidopsis thaliana DNA chromosome 3, BAC clone T25B15
          Length = 77350

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 80    aaaatcatataactagaaataaataaagaaaa 111
             ||||| |||||  |||||||||||||||||||
Sbjct: 72889 aaaataatatatttagaaataaataaagaaaa 72858
to top
>emb|AL050300.2|ATF22O6 Arabidopsis thaliana DNA chromosome 3, BAC clone F22O6
          Length = 93443

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 80   aaaatcatataactagaaataaataaagaaaa 111
            ||||| |||||  |||||||||||||||||||
Sbjct: 1575 aaaataatatatttagaaataaataaagaaaa 1544
to top
>emb|AL645855.25| Mouse DNA sequence from clone RP23-122N23 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 203914

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 87    tataactagaaataaataaa 106
             ||||||||||||||||||||
Sbjct: 25880 tataactagaaataaataaa 25899
to top
>gb|AC120797.9| Mus musculus chromosome 18, clone RP24-81D18, complete sequence
          Length = 210631

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    agaggcagctcttctacaat 394
              ||||||||||||||||||||
Sbjct: 171370 agaggcagctcttctacaat 171389
to top
>gb|AC084355.28| Homo sapiens 12 BAC RP11-318E11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179759

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     atataactagaaataaataa 105
              ||||||||||||||||||||
Sbjct: 153156 atataactagaaataaataa 153137
to top
>gb|AC175311.1| Medicago truncatula clone mth2-45n8, complete sequence
          Length = 94425

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   aagaaggaaaacatcatcaa 219
             ||||||||||||||||||||
Sbjct: 81259 aagaaggaaaacatcatcaa 81278
to top
>gb|AC146331.35| Medicago truncatula clone mth2-7h18, complete sequence
          Length = 138838

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 201   agaaggaaaacatcatcaac 220
             ||||||||||||||||||||
Sbjct: 47694 agaaggaaaacatcatcaac 47713
to top
>gb|AC093217.4| Homo sapiens chromosome 5 clone CTD-2120M21, complete sequence
          Length = 173501

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     agaaataaataaagaaaaaa 113
              ||||||||||||||||||||
Sbjct: 128112 agaaataaataaagaaaaaa 128093
to top
>gb|AC073369.5| Homo sapiens chromosome 10 clone RP11-466H6, complete sequence
          Length = 194855

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    agaaataaataaagaaaaaa 113
             ||||||||||||||||||||
Sbjct: 10303 agaaataaataaagaaaaaa 10284
to top
>gb|AC157786.7| Mus musculus chromosome 1, clone RP23-280O23, complete sequence
          Length = 205264

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 400   caaggagaaaaatgacgccc 419
             ||||||||||||||||||||
Sbjct: 18875 caaggagaaaaatgacgccc 18894
to top
>ref|XM_684477.1| PREDICTED: Danio rerio similar to Formin 1 isoform IV (Limb deformity
            protein) (LOC561077), mRNA
          Length = 5226

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 134  taccacctccacctatgaca 153
            ||||||||||||||||||||
Sbjct: 3701 taccacctccacctatgaca 3720
to top
>gb|AC090989.8| Homo sapiens chromosome 18, clone RP11-265C19, complete sequence
          Length = 108799

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    atataactagaaataaataa 105
             ||||||||||||||||||||
Sbjct: 37106 atataactagaaataaataa 37087
to top
>emb|CR318586.3| Zebrafish DNA sequence from clone CH211-239O22 in linkage group 7,
             complete sequence
          Length = 30205

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    agaaataaataaagaaaaaa 113
             ||||||||||||||||||||
Sbjct: 13474 agaaataaataaagaaaaaa 13455
to top
>ref|NM_001021549.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC29B5.04c),
            partial mRNA
          Length = 1818

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  ataatagtgagcaagatcttcaaa 190
            ||||| ||||||||||||||||||
Sbjct: 1241 ataatggtgagcaagatcttcaaa 1264
to top
>dbj|AK033814.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
            library, clone:9230113D18 product:unclassifiable, full
            insert sequence
          Length = 2830

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   tcatataactagaaataaat 103
            ||||||||||||||||||||
Sbjct: 994  tcatataactagaaataaat 1013
to top
>gb|AC022211.5|AC022211 Homo sapiens BAC clone RP11-649A18 from 17, complete sequence
          Length = 191155

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aggaaaaagaaatacagagt 51
             ||||||||||||||||||||
Sbjct: 85604 aggaaaaagaaatacagagt 85623
to top
>gb|AC010581.3|AC010581 Drosophila melanogaster, chromosome 3R, region 85D-85D, BAC clone
             BACR19J06, complete sequence
          Length = 175053

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aaataaagaaaaaaccaccg 119
             ||||||||||||||||||||
Sbjct: 15587 aaataaagaaaaaaccaccg 15568
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 94      agaaataaataaagaaaaaa 113
               ||||||||||||||||||||
Sbjct: 2260387 agaaataaataaagaaaaaa 2260406
to top
>gb|AC097720.5| Homo sapiens BAC clone RP11-1422N15 from 2, complete sequence
          Length = 137856

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 95    gaaataaataaagaaaaaac 114
             ||||||||||||||||||||
Sbjct: 23237 gaaataaataaagaaaaaac 23218
to top
>gb|AC156938.3| Mus musculus BAC clone RP23-314M12 from chromosome 14, complete
            sequence
          Length = 207534

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 84   tcatataactagaaataaat 103
            ||||||||||||||||||||
Sbjct: 4612 tcatataactagaaataaat 4593
to top
>gb|AY166803.1| Phoenix dactylifera NADH dehydrogenase subunit A (ndhA) gene,
           partial cds; and NADH dehydrogenase subunit I (ndhI)
           gene, complete cds; chloroplast genes for chloroplast
           products
          Length = 2787

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 92  ctagaaataaataaagaaaa 111
           ||||||||||||||||||||
Sbjct: 368 ctagaaataaataaagaaaa 387
to top
>emb|BX119968.5| Mouse DNA sequence from clone RP23-375D12 on chromosome X, complete
            sequence
          Length = 190433

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 211  catcatcaactgacaccatc 230
            ||||||||||||||||||||
Sbjct: 2479 catcatcaactgacaccatc 2460
to top
>emb|BX248136.12| Zebrafish DNA sequence from clone DKEY-81B15 in linkage group 20,
              complete sequence
          Length = 222316

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    taccacctccacctatgaca 153
              ||||||||||||||||||||
Sbjct: 192429 taccacctccacctatgaca 192410
to top
>emb|CT476810.5| Zebrafish DNA sequence from clone ZFOS-260D6 in linkage group 7,
            complete sequence
          Length = 19313

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 94   agaaataaataaagaaaaaa 113
            ||||||||||||||||||||
Sbjct: 5840 agaaataaataaagaaaaaa 5859
to top
>gb|AE003682.4| Drosophila melanogaster chromosome 3R, section 20 of 118 of the complete
              sequence
          Length = 224614

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    aaataaagaaaaaaccaccg 119
              ||||||||||||||||||||
Sbjct: 142085 aaataaagaaaaaaccaccg 142066
to top
>emb|BX001021.7| Zebrafish DNA sequence from clone BUSM1-140K9 in linkage group 20,
             complete sequence
          Length = 110590

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   taccacctccacctatgaca 153
             ||||||||||||||||||||
Sbjct: 97672 taccacctccacctatgaca 97653
to top
>emb|BX293563.9| Mouse DNA sequence from clone RP23-379K6 on chromosome 4, complete
             sequence
          Length = 104349

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 187   caaagatgtctttaagaaggaaaa 210
             ||||| ||||||||||||||||||
Sbjct: 77476 caaagttgtctttaagaaggaaaa 77499
to top
>emb|AL772352.8| Mouse DNA sequence from clone RP23-147F6 on chromosome 2, complete
              sequence
          Length = 204438

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 94     agaaataaataaagaaaaaa 113
              ||||||||||||||||||||
Sbjct: 194137 agaaataaataaagaaaaaa 194118
to top
>emb|AJ509355.1|AME509355 Apis mellifera microsatellite marker Am0124=AP080
          Length = 286

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 94  agaaataaataaagaaaaaa 113
           ||||||||||||||||||||
Sbjct: 158 agaaataaataaagaaaaaa 139
to top
>emb|AL845299.13| Mouse DNA sequence from clone RP23-375N8 on chromosome 2, complete
             sequence
          Length = 169070

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    agaaataaataaagaaaaaa 113
             ||||||||||||||||||||
Sbjct: 17490 agaaataaataaagaaaaaa 17509
to top
>gb|BC047224.1| Homo sapiens cDNA clone IMAGE:5272725, containing frame-shift errors
          Length = 1812

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 95   gaaataaataaagaaaaaac 114
            ||||||||||||||||||||
Sbjct: 1709 gaaataaataaagaaaaaac 1690
to top
>emb|CT009685.18| Pig DNA sequence from clone CH242-172A22 on chromosome 17, complete
             sequence
          Length = 130271

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    agaaataaataaagaaaaaa 113
             ||||||||||||||||||||
Sbjct: 22686 agaaataaataaagaaaaaa 22667
to top
>emb|AL840641.22| Zebrafish DNA sequence from clone DKEY-37O8, complete sequence
          Length = 177428

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 94    agaaataaataaagaaaaaa 113
             ||||||||||||||||||||
Sbjct: 42262 agaaataaataaagaaaaaa 42243
to top
>emb|AJ292274.1|NSY292274 Nicotiana sylvestris DNA flanking T-DNA insert line S22KdotNOSpro
            orphan R
          Length = 4753

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 129  gaacataccacctccaccta 148
            ||||||||||||||||||||
Sbjct: 4363 gaacataccacctccaccta 4382
to top
>emb|AL845316.3| Mouse DNA sequence from clone RP23-348I7 on chromosome X, complete
             sequence
          Length = 197688

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    agaaataaataaagaaaaaa 113
             ||||||||||||||||||||
Sbjct: 64344 agaaataaataaagaaaaaa 64363
to top
>emb|AL136308.4| Human DNA sequence from clone RP3-382L22 on chromosome 7 Contains STSs
             and GSSs, complete sequence
          Length = 86832

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   ctccaacgaaccttgagaat 311
             ||||||||||||||||||||
Sbjct: 25761 ctccaacgaaccttgagaat 25780
to top
>dbj|D83993.1|YSP972HB Fission yeast DNA for chromosome II cosmid 1228 sequence
          Length = 11941

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 167  ataatagtgagcaagatcttcaaa 190
            ||||| ||||||||||||||||||
Sbjct: 5499 ataatggtgagcaagatcttcaaa 5476
to top
>emb|AL669824.13| Mouse DNA sequence from clone RP23-396G1 on chromosome 2, complete
              sequence
          Length = 139077

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    ggcctagccaacaaccccag 336
              ||||||||||||||||||||
Sbjct: 114875 ggcctagccaacaaccccag 114856


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,842,070
Number of Sequences: 3902068
Number of extensions: 6842070
Number of successful extensions: 159777
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 159419
Number of HSP's gapped (non-prelim): 358
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top