ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44h04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC137821.22| Medicago truncatula clone mth2-15o11, complete sequence Length = 117225 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataa 66 |||||||||||||||||||||||| Sbjct: 59377 tactccctctgtaacaaaatataa 59400
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| |||||||||||| Sbjct: 22911008 tagtactccctctgtcacaaaatataag 22910981 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 8003386 tagtactccctctgttccaaaatataag 8003359 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 acataacttttcaagtttaa 37 |||||||||||||||||||| Sbjct: 1067724 acataacttttcaagtttaa 1067743
>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1019_E02 Length = 121607 Score = 48.1 bits (24), Expect = 0.026 Identities = 27/28 (96%) Strand = Plus / Minus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| |||||||||||| Sbjct: 104275 tagtactccctctgtcacaaaatataag 104248
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataagtttttt 73 ||||||||||||| |||||||||||| |||| Sbjct: 174813 tactccctctgtaccaaaatataagtatttt 174783
>emb|AL662937.4|OSJN00140 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0027G07, complete sequence Length = 179021 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataagtttttt 73 ||||||||||||| |||||||||||| |||| Sbjct: 13158 tactccctctgtaccaaaatataagtatttt 13128
>gb|AC087192.14| Oryza sativa chromosome 10 BAC OSJNBa0005K07 genomic sequence, complete sequence Length = 113606 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataagtttttt 73 ||||||||||||| |||||||||||| |||| Sbjct: 63539 tactccctctgtaccaaaatataagtatttt 63569
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataagtttttt 73 ||||||||||||| |||||||||||| |||| Sbjct: 22571058 tactccctctgtaccaaaatataagtatttt 22571028 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 ggaggaagtagtatgtacacta 134 |||||||||||||||||||||| Sbjct: 21860750 ggaggaagtagtatgtacacta 21860729 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 32394242 tagtactccctctgtcccaaaatataag 32394269
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataagtttttt 73 ||||||||||||| |||||||||||| |||| Sbjct: 19110968 tactccctctgtaccaaaatataagtatttt 19110998
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 96 gtcttatattttgatgaggaggaagta 122 |||||||||||||| |||||||||||| Sbjct: 11938569 gtcttatattttgaagaggaggaagta 11938595 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatat 64 |||||||||||||||||||||| Sbjct: 35395703 tactccctctgtaacaaaatat 35395724 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataagt 68 ||||||||| |||||||||||||||| Sbjct: 32355441 tactccctccgtaacaaaatataagt 32355416 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 42 gtactccctctgtaacaaaatataag 67 ||||||||||||| |||||||||||| Sbjct: 22636358 gtactccctctgttacaaaatataag 22636383 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 38 tttagtactccctctgtaacaaaatataagtttttt 73 |||| |||||||||||| |||||||||||| |||| Sbjct: 15408112 tttattactccctctgtcccaaaatataagtatttt 15408147
>dbj|AP005743.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0543C11 Length = 159075 Score = 46.1 bits (23), Expect = 0.10 Identities = 26/27 (96%) Strand = Plus / Plus Query: 96 gtcttatattttgatgaggaggaagta 122 |||||||||||||| |||||||||||| Sbjct: 35847 gtcttatattttgaagaggaggaagta 35873
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataagtttttt 73 ||||||||||||| |||||||||||| |||| Sbjct: 19122244 tactccctctgtaccaaaatataagtatttt 19122274
>emb|AL929516.15| Zebrafish DNA sequence from clone CH211-10C20 in linkage group 1, complete sequence Length = 165892 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 54 taacaaaatataagttttttgtt 76 ||||||||||||||||||||||| Sbjct: 87425 taacaaaatataagttttttgtt 87447
>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome Length = 706569 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 62 tataagttttttgttctaaatctagt 87 ||||| |||||||||||||||||||| Sbjct: 632720 tataatttttttgttctaaatctagt 632695
>gb|AY533110.1| Aster yellows witches'-broom phytoplasma cmp binding factor mRNA, complete cds Length = 966 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 62 tataagttttttgttctaaatctagt 87 ||||| |||||||||||||||||||| Sbjct: 628 tataatttttttgttctaaatctagt 603
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 gtactccctctgtaacaaaata 63 |||||||||||||||||||||| Sbjct: 28510816 gtactccctctgtaacaaaata 28510795 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 ||||||||||||| ||||||||||| Sbjct: 5549076 tactccctctgtatcaaaatataag 5549100 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 |||||||||||| |||||||||||| Sbjct: 3016886 tactccctctgttacaaaatataag 3016910 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 41 agtactccctctgtaacaaaatataagt 68 |||||||||||||| |||||||||||| Sbjct: 482648 agtactccctctgtttcaaaatataagt 482621
>ref|XM_850187.1| PREDICTED: Canis familiaris hypothetical protein LOC612458 (LOC612458), mRNA Length = 1831 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 agcagaaggcaagtgtttgctc 305 |||||||||||||||||||||| Sbjct: 1715 agcagaaggcaagtgtttgctc 1736
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 gtactccctctgtaacaaaata 63 |||||||||||||||||||||| Sbjct: 28602140 gtactccctctgtaacaaaata 28602119 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 ||||||||||||| ||||||||||| Sbjct: 5548291 tactccctctgtatcaaaatataag 5548315 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 |||||||||||| |||||||||||| Sbjct: 3017001 tactccctctgttacaaaatataag 3017025 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 41 agtactccctctgtaacaaaatataagt 68 |||||||||||||| |||||||||||| Sbjct: 482646 agtactccctctgtttcaaaatataagt 482619
>gb|AC082645.13|AC082645 Oryza sativa chromosome 3 BAC OSJNBb0033N16 genomic sequence, complete sequence Length = 143681 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 42 gtactccctctgtaacaaaata 63 |||||||||||||||||||||| Sbjct: 104946 gtactccctctgtaacaaaata 104925
>emb|AL606452.2|OSJN00007 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000114_01, complete sequence Length = 127713 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 113 ggaggaagtagtatgtacacta 134 |||||||||||||||||||||| Sbjct: 45351 ggaggaagtagtatgtacacta 45330
>dbj|AP003989.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1063_D06 Length = 102439 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatat 64 |||||||||||||||||||||| Sbjct: 7224 tactccctctgtaacaaaatat 7245
>dbj|AP004026.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1136_C04 Length = 103194 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatat 64 |||||||||||||||||||||| Sbjct: 56251 tactccctctgtaacaaaatat 56272
>dbj|AP005644.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0056I22 Length = 147728 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 42 gtactccctctgtaacaaaatataag 67 ||||||||||||| |||||||||||| Sbjct: 84169 gtactccctctgttacaaaatataag 84194
>dbj|AP005287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1004_A11 Length = 132352 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataagt 68 ||||||||| |||||||||||||||| Sbjct: 131273 tactccctccgtaacaaaatataagt 131248
>dbj|AP004125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1767_D02 Length = 139145 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataagt 68 ||||||||| |||||||||||||||| Sbjct: 16954 tactccctccgtaacaaaatataagt 16929
>emb|CR954185.2| Medicago truncatula chromosome 5 clone mth4-20m5, COMPLETE SEQUENCE Length = 210708 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 46 tccctctgtaacaaaatataag 67 |||||||||||||||||||||| Sbjct: 177544 tccctctgtaacaaaatataag 177523
>gb|AC005178.1| Homo sapiens chromosome 5, P1 clone 328E3 (LBNL H53), complete sequence Length = 84969 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 taagttttttgttctaaatctagtc 88 |||||||||| |||||||||||||| Sbjct: 83337 taagtttttttttctaaatctagtc 83313
>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0015P05 map C53961S, complete sequence Length = 175121 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 taatttagtactccctctgtaacaaaatataag 67 ||||||| |||||||||||| ||||||||||| Sbjct: 53951 taatttactactccctctgtcccaaaatataag 53919
>gb|AF394555.1| Oryza sativa alpha-expansin OsEXPA20 (EXPA20) gene, complete cds Length = 4996 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 |||||||||||| |||||||||||| Sbjct: 514 tactccctctgttacaaaatataag 538
>gb|AC124463.2| Mus musculus BAC clone RP24-152K14 from chromosome 1, complete sequence Length = 153199 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 ttatattttgatgaggaggaa 119 ||||||||||||||||||||| Sbjct: 105016 ttatattttgatgaggaggaa 104996
>gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete sequence Length = 121026 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 |||||||||| |||||||||||||| Sbjct: 112415 tactccctctctaacaaaatataag 112439
>emb|AL136985.11| Human DNA sequence from clone RP11-63G10 on chromosome 1p32.1-32.3 Contains the JUN gene for v-jun sarcoma virus 17 oncogene homolog (avian), a novel gene, the 5' end of a novel gene and a CpG island, complete sequence Length = 142664 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 134 aaaagagcagtattttgatga 154 ||||||||||||||||||||| Sbjct: 130774 aaaagagcagtattttgatga 130794
>gb|AC132214.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0040M05, from chromosome 3, complete sequence Length = 153126 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 ||||||||||||| ||||||||||| Sbjct: 92608 tactccctctgtatcaaaatataag 92632
>gb|AC105730.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0011L14, complete sequence Length = 117974 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataag 67 |||||||||||| |||||||||||| Sbjct: 79375 tactccctctgttacaaaatataag 79351
>gb|AC117534.2| Homo sapiens chromosome 5 clone RP11-880E14, complete sequence Length = 94993 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 64 taagttttttgttctaaatctagtc 88 |||||||||| |||||||||||||| Sbjct: 5491 taagtttttttttctaaatctagtc 5467
>gb|AC023061.4| Homo sapiens chromosome 5 clone RP1-59F3, complete sequence Length = 88200 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 64 taagttttttgttctaaatctagtc 88 |||||||||| |||||||||||||| Sbjct: 48812 taagtttttttttctaaatctagtc 48836
>gb|AC100828.2| Homo sapiens chromosome 15, clone RP11-184D12, complete sequence Length = 175123 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 aaaaaccaccccaaaaaacca 200 ||||||||||||||||||||| Sbjct: 172801 aaaaaccaccccaaaaaacca 172821
>gb|AC040918.7| Homo sapiens chromosome 15, clone RP11-684B21, complete sequence Length = 175919 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 aaaaaccaccccaaaaaacca 200 ||||||||||||||||||||| Sbjct: 35315 aaaaaccaccccaaaaaacca 35335
>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15, complete sequence Length = 166282 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 |||||||||||| |||||||||||| Sbjct: 154377 tactccctctgttacaaaatataag 154401
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 30 aagtttaatttagtactccctctgtaacaaaatataa 66 |||||||||||| ||||||||| || |||||||||| Sbjct: 23069747 aagtttaatttactactccctccgttccaaaatataa 23069783
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 taatttagtactccctctgtaacaaaatataag 67 ||||||| |||||||||||| ||||||||||| Sbjct: 11267593 taatttactactccctctgtcccaaaatataag 11267561 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataa 66 ||||||||||||| |||||||||| Sbjct: 18952193 tactccctctgtaccaaaatataa 18952170
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaata 63 ||||||||||||||||||||| Sbjct: 1023578 tactccctctgtaacaaaata 1023598
>gb|AC105928.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0014O06, complete sequence Length = 168031 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaatataag 67 ||||||||||||| ||||||||||| Sbjct: 12775 tactccctctgtatcaaaatataag 12799
>dbj|AP003925.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1005_B05 Length = 144799 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tactccctctgtaacaaaata 63 ||||||||||||||||||||| Sbjct: 52105 tactccctctgtaacaaaata 52125
>gb|AY880061.1| Avena sativa clone CRC.LB3 crown rust resistance gene Pc68-related sequence Length = 774 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 41 agtactccctctgtaacaaaatataagtttttt 73 |||||||||||||| ||| |||||||| ||||| Sbjct: 532 agtactccctctgttacataatataagattttt 500
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.6 Identities = 30/33 (90%) Strand = Plus / Minus Query: 35 taatttagtactccctctgtaacaaaatataag 67 ||||||| |||||||||||| ||||||||||| Sbjct: 11346782 taatttactactccctctgtcccaaaatataag 11346750 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataa 66 ||||||||||||| |||||||||| Sbjct: 19110842 tactccctctgtaccaaaatataa 19110819
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 30 aagtttaatttagtactccctctgtaacaaaatataa 66 |||||||||||| ||||||||| || |||||||||| Sbjct: 22997938 aagtttaatttactactccctccgttccaaaatataa 22997974
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 135323 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 30 aagtttaatttagtactccctctgtaacaaaatataa 66 |||||||||||| ||||||||| || |||||||||| Sbjct: 108650 aagtttaatttactactccctccgttccaaaatataa 108614
>gb|AC147236.3| Mus musculus BAC clone RP23-357C20 from 1, complete sequence Length = 217902 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ttatattttgatgaggaggaa 119 ||||||||||||||||||||| Sbjct: 197551 ttatattttgatgaggaggaa 197571
>emb|AL772366.7| Mouse DNA sequence from clone RP23-171C7 on chromosome 2, complete sequence Length = 167389 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 aaacaaatttcacataacttt 27 ||||||||||||||||||||| Sbjct: 79193 aaacaaatttcacataacttt 79213
>ref|XM_958378.1| Neurospora crassa OR74A hypothetical protein (NCU05480.1) partial mRNA Length = 819 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gccattgagaagcagaaggc 293 |||||||||||||||||||| Sbjct: 57 gccattgagaagcagaaggc 38
>ref|XM_325334.1| Neurospora crassa OR74A hypothetical protein (NCU05480.1) partial mRNA Length = 819 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gccattgagaagcagaaggc 293 |||||||||||||||||||| Sbjct: 57 gccattgagaagcagaaggc 38
>gb|AC151805.20| Medicago truncatula clone mth2-59n17, complete sequence Length = 143937 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 90585 tagtactccctctgtttcaaaatataag 90612
>gb|AC170084.13| Medicago truncatula clone mth2-156k10, complete sequence Length = 143943 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 53352 tagtactccctctgtttcaaaatataag 53325
>gb|AC134925.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041J17, complete sequence Length = 148829 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 tactccctctgtaacaaaatataa 66 ||||||||||||| |||||||||| Sbjct: 55391 tactccctctgtaccaaaatataa 55368
>ref|XR_002051.1| PREDICTED: Mus musculus similar to SET translocation (predicted) (LOC633639), mRNA Length = 1116 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 tgatgaggaggaagtagtat 126 |||||||||||||||||||| Sbjct: 945 tgatgaggaggaagtagtat 964
>gb|AC145945.2| Gallus gallus chromosome UNK clone CH261-23M4, complete sequence Length = 199148 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 aaaaaccaccccaaaaaaccagat 203 ||||| |||||||||||||||||| Sbjct: 193044 aaaaaacaccccaaaaaaccagat 193021
>gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome 13, complete sequence Length = 167801 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttcacataacttttcaagtt 34 |||||||||||||||||||| Sbjct: 117605 ttcacataacttttcaagtt 117624
>emb|BX950192.10| Zebrafish DNA sequence from clone CH211-173E20 in linkage group 17, complete sequence Length = 135523 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 23 acttttcaagtttaatttag 42 |||||||||||||||||||| Sbjct: 37699 acttttcaagtttaatttag 37718
>emb|AL935261.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 10/11 Length = 298050 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 agtattttgatgaatcaaat 161 |||||||||||||||||||| Sbjct: 210726 agtattttgatgaatcaaat 210707
>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13, complete sequence Length = 123480 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 11043 tagtactccctctgtcccaaaatataag 11070
>emb|BX572103.8| Zebrafish DNA sequence from clone CH211-215L16 in linkage group 11, complete sequence Length = 204701 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 ttcacataacttttcaagtttaat 38 |||||||||||||| ||||||||| Sbjct: 174332 ttcacataacttttaaagtttaat 174355
>gb|U73336.1|LLU73336 Lactococcus lactis anaerobic ribonucleotide reductase (nrdD) and anaerobic ribonucleotide reductase activator protein (nrdG) genes, complete cds Length = 3288 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 acaaaatataagttttttgt 75 |||||||||||||||||||| Sbjct: 34 acaaaatataagttttttgt 15
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 32464864 tagtactccctctgtcccaaaatataag 32464891 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 36 aatttagtactccctctgtaacaaaatataag 67 |||||||||||||||| || ||||||||||| Sbjct: 4792434 aatttagtactccctccgttccaaaatataag 4792403
>gb|AC105922.5| Homo sapiens BAC clone RP11-548K13 from 2, complete sequence Length = 115915 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 282 gaagcagaaggcaagtgttt 301 |||||||||||||||||||| Sbjct: 22627 gaagcagaaggcaagtgttt 22646
>gb|AC069329.6|AC069329 Genomic Sequence For Arabidopsis thaliana Clone T3P01 From Chromosome V, complete sequence Length = 141430 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ttttttgttctaaatctagt 87 |||||||||||||||||||| Sbjct: 109188 ttttttgttctaaatctagt 109207
>gb|AC018755.3|AC018755 Homo sapiens chromosome 19, BAC BC330783 (CIT-HSPC_470E3), complete sequence Length = 229155 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 taaaaaccaccccaaaaaac 198 |||||||||||||||||||| Sbjct: 190884 taaaaaccaccccaaaaaac 190865
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 52385 tagtactccctctgtcccaaaatataag 52412
>gb|AC124446.3| Mus musculus BAC clone RP24-201I19 from chromosome 13, complete sequence Length = 168981 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 ttcacataacttttcaagtt 34 |||||||||||||||||||| Sbjct: 16146 ttcacataacttttcaagtt 16165
>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710E05 Length = 179714 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 36 aatttagtactccctctgtaacaaaatataag 67 |||||||||||||||| || ||||||||||| Sbjct: 37083 aatttagtactccctccgttccaaaatataag 37052
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 41583 tagtactccctctgttccaaaatataag 41556
>emb|BX842592.1| Neurospora crassa DNA linkage group II BAC clone B22L22 Length = 37141 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gccattgagaagcagaaggc 293 |||||||||||||||||||| Sbjct: 20901 gccattgagaagcagaaggc 20882
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ttttttgttctaaatctagt 87 |||||||||||||||||||| Sbjct: 126273 ttttttgttctaaatctagt 126292
>dbj|AP005650.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0078K05 Length = 162901 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 38 tttagtactccctctgtaacaaaatataagtttttt 73 |||| |||||||||||| |||||||||||| |||| Sbjct: 78894 tttattactccctctgtcccaaaatataagtatttt 78929
>emb|BX001050.4| Zebrafish DNA sequence from clone CH211-139N6 in linkage group 10, complete sequence Length = 175495 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 tctgtaacaaaatataagtttttt 73 ||||||||||||||||||| |||| Sbjct: 5380 tctgtaacaaaatataagtatttt 5403
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0418E08 Length = 141040 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 119745 tagtactccctctgttccaaaatataag 119718
>gb|AY812066.1| Schistosoma japonicum clone SJCHGC01961 unknown mRNA Length = 354 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 aaaaaccaccccaaaaaacc 199 |||||||||||||||||||| Sbjct: 191 aaaaaccaccccaaaaaacc 210
>dbj|AP004262.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022B05 Length = 151317 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 acataacttttcaagtttaa 37 |||||||||||||||||||| Sbjct: 65312 acataacttttcaagtttaa 65331
>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete sequence Length = 63554 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 40 tagtactccctctgtaacaaaatataag 67 ||||||||||||||| ||||||||||| Sbjct: 55732 tagtactccctctgtcccaaaatataag 55759
>emb|AL122125.4|CNS01DT0 Human chromosome 14 DNA sequence BAC R-102G14 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188849 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 12 aatttcacataacttttcaagttt 35 |||||||||||| ||||||||||| Sbjct: 113526 aatttcacataatttttcaagttt 113549
>dbj|AP000764.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-811N23, complete sequence Length = 216203 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 caaaatataagttttttgtt 76 |||||||||||||||||||| Sbjct: 88893 caaaatataagttttttgtt 88874
>gb|AF036720.1|AF036720 Lactococcus lactis N-acetylmuramidase (acmA) gene, complete cds Length = 2379 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 acaaaatataagttttttgt 75 |||||||||||||||||||| Sbjct: 470 acaaaatataagttttttgt 489
>dbj|AP006412.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT29C05, TM0301c, complete sequence Length = 48718 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 42 gtactccctctgtaacaaaatataagtt 69 ||||||||||||| ||||||||||||| Sbjct: 32683 gtactccctctgttccaaaatataagtt 32710
>gb|AC113930.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1384D03, complete sequence Length = 116214 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 41 agtactccctctgtaacaaaatataagt 68 |||||||||||||| |||||||||||| Sbjct: 81108 agtactccctctgtttcaaaatataagt 81081 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,840,213 Number of Sequences: 3902068 Number of extensions: 4840213 Number of successful extensions: 100804 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98952 Number of HSP's gapped (non-prelim): 1851 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
