ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GNL3_HUMAN (Q9BVP2) Guanine nucleotide-binding protein-like 3 (N... 32 0.78
2GNL3_RAT (Q811S9) Guanine nucleotide-binding protein-like 3 (Nuc... 31 2.3
3GNL3_MOUSE (Q8CI11) Guanine nucleotide-binding protein-like 3 (N... 30 3.0
4GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 pre... 29 6.6

>GNL3_HUMAN (Q9BVP2) Guanine nucleotide-binding protein-like 3 (Nucleolar|
           GTP-binding protein 3) (Nucleostemin) (E2-induced gene
           3-protein) (Novel nucleolar protein 47) (NNP47)
          Length = 549

 Score = 32.3 bits (72), Expect = 0.78
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = -3

Query: 419 KEKDGHRANKRESLRMGHRGNSRIP----SAHESREKLRNSDIFKKRLDEPDEQQK 264
           K ++ HR  ++E+ + GH+   + P    SA      LR +++ K+RL+E  +QQK
Sbjct: 24  KVREHHRKLRKEAKKQGHKKPRKDPGVPNSAPFKEALLREAELRKQRLEELKQQQK 79



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>GNL3_RAT (Q811S9) Guanine nucleotide-binding protein-like 3 (Nucleolar|
           GTP-binding protein 3) (Nucleostemin)
          Length = 538

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = -3

Query: 419 KEKDGHRANKRESLRMGHRGNSRIP----SAHESREKLRNSDIFKKRLDEPDEQQK 264
           K ++ HR  ++E+ + GH+   + P    SA      LR +++ K++L+E  +QQK
Sbjct: 24  KVREHHRKLRKEAKKRGHKKPKKDPGVPNSAPFKEALLREAELRKQQLEELKQQQK 79



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>GNL3_MOUSE (Q8CI11) Guanine nucleotide-binding protein-like 3 (Nucleolar|
           GTP-binding protein 3) (Nucleostemin)
          Length = 538

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = -3

Query: 419 KEKDGHRANKRESLRMGHRGNSRIP----SAHESREKLRNSDIFKKRLDEPDEQQK 264
           K ++ HR  ++E+ + GH+   + P    SA      LR +++ K++L+E  +QQK
Sbjct: 24  KVREHHRKLRKEAKKRGHKKPRKDPGVPNSAPFKEALLREAELRKQQLEELKQQQK 79



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>GP158_MOUSE (Q8C419) Probable G-protein coupled receptor 158 precursor|
          Length = 1200

 Score = 29.3 bits (64), Expect = 6.6
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
 Frame = -3

Query: 455  QKAQSLIFPSAMKEKDGHRANKRESLRMGHRGNSRIPSAHESREKLRNSDIFKK-----R 291
            QK+ S+I  ++ KEK    A K ++L M  R  S+ P   E+  K  NSD  +       
Sbjct: 900  QKSLSVI--ASAKEKTLGLAGKTQTLVMEDRAKSQKPKDRETIRKYSNSDNVETIPNSGH 957

Query: 290  LDEPDEQQK 264
            ++EP + QK
Sbjct: 958  MEEPRKPQK 966


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,900,125
Number of Sequences: 219361
Number of extensions: 1433214
Number of successful extensions: 3501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3501
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3812186532
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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