ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4,... 80 8e-12
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 80 8e-12
3dbj|AK106073.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 8e-12
4ref|XM_473674.1| Oryza sativa (japonica cultivar-group), predic... 78 3e-11
5emb|AL132821.17|HSDJ999L4 Human DNA sequence from clone RP5-999L... 44 0.44
6emb|CR377227.7| Zebrafish DNA sequence from clone CH211-226F6 in... 44 0.44
7gb|AC011747.8| Homo sapiens BAC clone RP11-434B12 from 2, comple... 44 0.44
8gb|AE014075.1| Escherichia coli CFT073, complete genome 42 1.8
9gb|CP000243.1| Escherichia coli UTI89, complete genome 42 1.8
10gb|AC128684.4| Homo sapiens 3 BAC RP11-117K16 (Roswell Park Canc... 42 1.8
11gb|AC009901.6|AC009901 Homo sapiens chromosome 8, clone RP11-98H... 42 1.8
12gb|AF258812.1|AF258812 Lycopersicon esculentum aldehyde oxidase ... 42 1.8
13gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complet... 42 1.8
14gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, comple... 42 1.8
15emb|AL928712.8| Zebrafish DNA sequence from clone CH211-220O11 i... 42 1.8
16emb|AL845286.8| Mouse DNA sequence from clone RP23-328F20 on chr... 42 1.8
17gb|AC116792.17| Mus musculus chromosome 6, clone RP24-304O23, co... 40 6.9
18gb|AC156936.5| Mus musculus BAC clone RP24-90K8 from chromosome ... 40 6.9
19gb|AC131695.4| Mus musculus BAC clone RP23-396F8 from chromosome... 40 6.9
20gb|AC147666.4| Pan troglodytes BAC clone CH251-196O7 from Y, com... 40 6.9
21gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosom... 40 6.9
22gb|AC122527.3| Mus musculus BAC clone RP24-502E10 from chromosom... 40 6.9
23gb|AC146455.3| Pan troglodytes BAC clone CH251-460B7 from Y, com... 40 6.9
24gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosom... 40 6.9
25gb|AC142350.1| Pan troglodytes BAC clone RP43-12B4 from Y, compl... 40 6.9
26gb|AC146914.9| Medicago truncatula clone mth2-57l14, complete se... 40 6.9
27gb|AC136839.20| Medicago truncatula clone mth2-13n2, complete se... 40 6.9
28emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, c... 40 6.9
29emb|AL513015.6| Human DNA sequence from clone RP1-52M20 on chrom... 40 6.9
30emb|Y13631.1|CBY13631 Clostridium botulinum P-21, P-47 ntnh, bon... 40 6.9
31emb|X74947.1|MSANN M.sativa mRNA for annexin 40 6.9
32emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, ... 40 6.9
33emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, B... 40 6.9
34gb|AY286051.1| Hibiscus cannabinus clone HCM2 microsatellite seq... 40 6.9
35emb|AL671007.9| Mouse DNA sequence from clone RP23-435P5 on chro... 40 6.9
36gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.9
37gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, com... 40 6.9
38gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer... 40 6.9
39gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F... 40 6.9
40gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, comp... 40 6.9
41gb|AC104896.13| Mus musculus chromosome 1, clone RP23-299F18, co... 40 6.9
42gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, comp... 40 6.9 
>emb|AL662957.2|OSJN00157 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0013K16,
             complete sequence
          Length = 145739

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 96/114 (84%), Gaps = 3/114 (2%)
 Strand = Plus / Plus

                                                                         
Query: 243   agttcaatgccagtctgatttcttttgttgctcgtcg---ggctcatcaagtcttttctt 299
             |||||| | ||| |||||||| ||||||| |||||||   ||||||||||||||  | ||
Sbjct: 60046 agttcagttccaatctgatttgttttgtttctcgtcgttgggctcatcaagtctcctttt 60105

                                                                   
Query: 300   gaagatatctgaattgcgaagcttctctctagactcgtgagctgaaggtattct 353
             ||||||||||||||| |||||||| |||||||| || || ||||| || |||||
Sbjct: 60106 gaagatatctgaattacgaagcttttctctagattcatgtgctgatggaattct 60159
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 96/114 (84%), Gaps = 3/114 (2%)
 Strand = Plus / Plus

                                                                            
Query: 243      agttcaatgccagtctgatttcttttgttgctcgtcg---ggctcatcaagtcttttctt 299
                |||||| | ||| |||||||| ||||||| |||||||   ||||||||||||||  | ||
Sbjct: 29557357 agttcagttccaatctgatttgttttgtttctcgtcgttgggctcatcaagtctcctttt 29557416

                                                                      
Query: 300      gaagatatctgaattgcgaagcttctctctagactcgtgagctgaaggtattct 353
                ||||||||||||||| |||||||| |||||||| || || ||||| || |||||
Sbjct: 29557417 gaagatatctgaattacgaagcttttctctagattcatgtgctgatggaattct 29557470
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>dbj|AK106073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-H09, full
           insert sequence
          Length = 1099

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 96/114 (84%), Gaps = 3/114 (2%)
 Strand = Plus / Minus

                                                                       
Query: 243 agttcaatgccagtctgatttcttttgttgctcgtcg---ggctcatcaagtcttttctt 299
           |||||| | ||| |||||||| ||||||| |||||||   ||||||||||||||  | ||
Sbjct: 778 agttcagttccaatctgatttgttttgtttctcgtcgttgggctcatcaagtctcctttt 719

                                                                 
Query: 300 gaagatatctgaattgcgaagcttctctctagactcgtgagctgaaggtattct 353
           ||||||||||||||| |||||||| |||||||| || || ||||| || |||||
Sbjct: 718 gaagatatctgaattacgaagcttttctctagattcatgtgctgatggaattct 665



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 475 atatcaccattcctgatgcctgcttctagctgaacatg 512
           ||||||||| ||||||||| ||| ||||||||||||||
Sbjct: 549 atatcaccagtcctgatgcttgcctctagctgaacatg 512
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>ref|XM_473674.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 723

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 86/101 (85%), Gaps = 3/101 (2%)
 Strand = Plus / Minus

                                                                       
Query: 256 tctgatttcttttgttgctcgtcg---ggctcatcaagtcttttcttgaagatatctgaa 312
           |||||||| ||||||| |||||||   ||||||||||||||  | |||||||||||||||
Sbjct: 713 tctgatttgttttgtttctcgtcgttgggctcatcaagtctccttttgaagatatctgaa 654

                                                    
Query: 313 ttgcgaagcttctctctagactcgtgagctgaaggtattct 353
           || |||||||| |||||||| || || ||||| || |||||
Sbjct: 653 ttacgaagcttttctctagattcatgtgctgatggaattct 613



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 475 atatcaccattcctgatgcctgcttctagctgaacatg 512
           ||||||||| ||||||||| ||| ||||||||||||||
Sbjct: 497 atatcaccagtcctgatgcttgcctctagctgaacatg 460
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>emb|AL132821.17|HSDJ999L4 Human DNA sequence from clone RP5-999L4 on chromosome 20 Contains the
             RPL12L3 gene for ribosomal protein L12-like 3 pseudogene
             and the 5' end of the RIN2 gene for Ras and Rab interactor
             2, complete sequence
          Length = 100080

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 409   tctttttccttcatagcactgg 430
             ||||||||||||||||||||||
Sbjct: 58996 tctttttccttcatagcactgg 59017
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>emb|CR377227.7| Zebrafish DNA sequence from clone CH211-226F6 in linkage group 2,
             complete sequence
          Length = 63114

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 446   gtgctttttgaaagaacatgaa 467
             ||||||||||||||||||||||
Sbjct: 55911 gtgctttttgaaagaacatgaa 55932
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>gb|AC011747.8| Homo sapiens BAC clone RP11-434B12 from 2, complete sequence
          Length = 177433

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 286    tcaagtcttttcttgaagatatctga 311
              ||||| ||||||||||||||||||||
Sbjct: 106841 tcaagccttttcttgaagatatctga 106866
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>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 201    ctggaaccatttccggtgcca 221
              |||||||||||||||||||||
Sbjct: 734954 ctggaaccatttccggtgcca 734974
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>gb|CP000243.1| Escherichia coli UTI89, complete genome
          Length = 5065741

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 201    ctggaaccatttccggtgcca 221
              |||||||||||||||||||||
Sbjct: 676867 ctggaaccatttccggtgcca 676887
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>gb|AC128684.4| Homo sapiens 3 BAC RP11-117K16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 80307

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 447   tgctttttgaaagaacatgaa 467
             |||||||||||||||||||||
Sbjct: 22884 tgctttttgaaagaacatgaa 22904
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>gb|AC009901.6|AC009901 Homo sapiens chromosome 8, clone RP11-98H4, complete sequence
          Length = 151966

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 367   tgtcccattctgagagattct 387
             |||||||||||||||||||||
Sbjct: 97341 tgtcccattctgagagattct 97361
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>gb|AF258812.1|AF258812 Lycopersicon esculentum aldehyde oxidase (AO5) pseudogene, mRNA
            sequence
          Length = 4517

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 245  ttcaatgccagtctgatttcttttg 269
            ||||||||||||||||| |||||||
Sbjct: 1087 ttcaatgccagtctgatctcttttg 1063
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>gb|AC122193.5| Mus musculus BAC clone RP23-45G16 from 6, complete sequence
          Length = 211512

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    caagttcaatgccagtctgat 261
              |||||||||||||||||||||
Sbjct: 189681 caagttcaatgccagtctgat 189701
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>gb|AC140287.3| Mus musculus BAC clone RP23-346L16 from 6, complete sequence
          Length = 213473

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    caagttcaatgccagtctgat 261
              |||||||||||||||||||||
Sbjct: 145414 caagttcaatgccagtctgat 145394
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>emb|AL928712.8| Zebrafish DNA sequence from clone CH211-220O11 in linkage group 17,
              complete sequence
          Length = 137441

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 479    caccattcctgatgcctgctt 499
              |||||||||||||||||||||
Sbjct: 123046 caccattcctgatgcctgctt 123066
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>emb|AL845286.8| Mouse DNA sequence from clone RP23-328F20 on chromosome 2, complete
              sequence
          Length = 195593

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 243    agttcaatgccagtctgattt 263
              |||||||||||||||||||||
Sbjct: 144372 agttcaatgccagtctgattt 144392
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>gb|AC116792.17| Mus musculus chromosome 6, clone RP24-304O23, complete sequence
          Length = 155145

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    aagttcaatgccagtctgat 261
              ||||||||||||||||||||
Sbjct: 107435 aagttcaatgccagtctgat 107416
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>gb|AC156936.5| Mus musculus BAC clone RP24-90K8 from chromosome 14, complete sequence
          Length = 203649

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    aacactaaaaatctgaaacc 116
             ||||||||||||||||||||
Sbjct: 79276 aacactaaaaatctgaaacc 79295
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>gb|AC131695.4| Mus musculus BAC clone RP23-396F8 from chromosome 6, complete sequence
          Length = 199679

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 240    tcaagttcaatgccagtctg 259
              ||||||||||||||||||||
Sbjct: 115139 tcaagttcaatgccagtctg 115120
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>gb|AC147666.4| Pan troglodytes BAC clone CH251-196O7 from Y, complete sequence
          Length = 189158

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 448    gctttttgaaagaacatgaa 467
              ||||||||||||||||||||
Sbjct: 178864 gctttttgaaagaacatgaa 178845
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>gb|AC140208.2| Mus musculus BAC clone RP24-469B21 from chromosome 14, complete
             sequence
          Length = 200350

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    aacactaaaaatctgaaacc 116
             ||||||||||||||||||||
Sbjct: 30260 aacactaaaaatctgaaacc 30241
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>gb|AC122527.3| Mus musculus BAC clone RP24-502E10 from chromosome 6, complete sequence
          Length = 180682

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    aagttcaatgccagtctgat 261
              ||||||||||||||||||||
Sbjct: 171028 aagttcaatgccagtctgat 171047
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>gb|AC146455.3| Pan troglodytes BAC clone CH251-460B7 from Y, complete sequence
          Length = 211439

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 448    gctttttgaaagaacatgaa 467
              ||||||||||||||||||||
Sbjct: 205011 gctttttgaaagaacatgaa 205030
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>gb|AC163723.3| Mus musculus BAC clone RP23-450O11 from chromosome 16, complete
            sequence
          Length = 181338

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  caagttcaatgccagtctga 260
            ||||||||||||||||||||
Sbjct: 5191 caagttcaatgccagtctga 5210
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>gb|AC142350.1| Pan troglodytes BAC clone RP43-12B4 from Y, complete sequence
          Length = 168803

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 448    gctttttgaaagaacatgaa 467
              ||||||||||||||||||||
Sbjct: 107766 gctttttgaaagaacatgaa 107747
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>gb|AC146914.9| Medicago truncatula clone mth2-57l14, complete sequence
          Length = 122769

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttgtgatatgtatgaactat 33
             ||||||||||||||||||||
Sbjct: 22387 ttgtgatatgtatgaactat 22368
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>gb|AC136839.20| Medicago truncatula clone mth2-13n2, complete sequence
          Length = 121995

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ttgtgatatgtatgaactat 33
             ||||||||||||||||||||
Sbjct: 38286 ttgtgatatgtatgaactat 38267
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>emb|CR974412.1| M.murinus DNA sequence from clone CH257-37C10, complete sequence
          Length = 250701

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   acccacacacagactttctg 177
             ||||||||||||||||||||
Sbjct: 57843 acccacacacagactttctg 57862
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>emb|AL513015.6| Human DNA sequence from clone RP1-52M20 on chromosome 6p22.1-22.3
             Contains part of a novel gene (FLJ20342), complete
             sequence
          Length = 113228

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 410   ctttttccttcatagcactg 429
             ||||||||||||||||||||
Sbjct: 54656 ctttttccttcatagcactg 54675
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>emb|Y13631.1|CBY13631 Clostridium botulinum P-21, P-47 ntnh, bonT genes
          Length = 9325

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 411  tttttccttcatagcactgggaaagata 438
            |||||||||||||||||| |||| ||||
Sbjct: 6303 tttttccttcatagcactaggaatgata 6276
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>emb|X74947.1|MSANN M.sativa mRNA for annexin
          Length = 1182

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 14   ttgtgatatgtatgaactat 33
            ||||||||||||||||||||
Sbjct: 1058 ttgtgatatgtatgaactat 1077
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>emb|AL161587.2|ATCHRIV83 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 83
          Length = 197859

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    ctacacccctaattcaacac 101
             ||||||||||||||||||||
Sbjct: 72296 ctacacccctaattcaacac 72277
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>emb|AL022604.1|ATF23E12 Arabidopsis thaliana DNA chromosome 4, BAC clone  F23E12 (ESSA project)
          Length = 86710

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 82    ctacacccctaattcaacac 101
             ||||||||||||||||||||
Sbjct: 31055 ctacacccctaattcaacac 31074
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>gb|AY286051.1| Hibiscus cannabinus clone HCM2 microsatellite sequence
          Length = 656

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 168 agactttctgcagctatataagca 191
           ||||||||||||||||||| ||||
Sbjct: 268 agactttctgcagctatattagca 291
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>emb|AL671007.9| Mouse DNA sequence from clone RP23-435P5 on chromosome 4, complete
            sequence
          Length = 27860

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 276  gtcgggctcatcaagtcttt 295
            ||||||||||||||||||||
Sbjct: 2407 gtcgggctcatcaagtcttt 2388
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 448     gctttttgaaagaacatgaa 467
               ||||||||||||||||||||
Sbjct: 7697183 gctttttgaaagaacatgaa 7697202
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>gb|AC011197.12| Homo sapiens chromosome 10 clone RP11-322C8, complete sequence
          Length = 162784

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   cttcatagcactgggaaaga 436
             ||||||||||||||||||||
Sbjct: 35745 cttcatagcactgggaaaga 35764
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>gb|AC158626.6| Mus musculus 6 BAC RP23-4F16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 240079

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    aagttcaatgccagtctgat 261
              ||||||||||||||||||||
Sbjct: 175315 aagttcaatgccagtctgat 175296
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>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete
             sequence
          Length = 104001

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   gaaaccacaagcctgctacataca 134
             |||||||||||||| |||||||||
Sbjct: 32008 gaaaccacaagcctactacataca 32031
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>gb|AC157768.4| Mus musculus chromosome 1, clone RP24-308M3, complete sequence
          Length = 202770

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 242    aagttcaatgccagtctgat 261
              ||||||||||||||||||||
Sbjct: 124866 aagttcaatgccagtctgat 124847
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>gb|AC104896.13| Mus musculus chromosome 1, clone RP23-299F18, complete sequence
          Length = 184316

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    aagttcaatgccagtctgat 261
              ||||||||||||||||||||
Sbjct: 135168 aagttcaatgccagtctgat 135187
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>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence
          Length = 214373

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 230    gagaaccccgtcaagttcaatgccagtctgat 261
              ||||||| | |||||||||| |||||||||||
Sbjct: 129044 gagaaccacttcaagttcaaggccagtctgat 129013


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,365,146
Number of Sequences: 3902068
Number of extensions: 5365146
Number of successful extensions: 100192
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100021
Number of HSP's gapped (non-prelim): 171
length of query: 514
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 491
effective length of database: 17,143,297,704
effective search space: 8417359172664
effective search space used: 8417359172664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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