ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44g11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SCW10_YEAST (Q04951) Probable family 17 glucosidase SCW10 precur... 30 2.3
2DYI2_CHLRE (Q39578) Dynein, 78 kDa intermediate chain, flagellar... 29 3.9
3CAN1_MACFA (Q9GLG2) Calpain-1 catalytic subunit (EC 3.4.22.52) (... 29 3.9
4CAN1_BOVIN (Q27970) Calpain-1 catalytic subunit (EC 3.4.22.52) (... 28 6.7
5TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1... 28 8.8

>SCW10_YEAST (Q04951) Probable family 17 glucosidase SCW10 precursor (EC|
           3.2.1.-) (Soluble cell wall protein 10)
          Length = 389

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -3

Query: 297 AWTVTLGKPISTTKANIKSSGVVQYLVFVRPCVS*INTPDNCS 169
           A T  +G+ +ST K+ + S+G    +V V   ++ IN PD C+
Sbjct: 237 ATTTQVGEYVSTAKSALTSAGYTGSVVSVDTFIAVINNPDLCN 279



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>DYI2_CHLRE (Q39578) Dynein, 78 kDa intermediate chain, flagellar outer arm|
           (IC78)
          Length = 682

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 15/63 (23%), Positives = 34/63 (53%)
 Frame = -1

Query: 368 SQQHKSQSNSILTMWINKRSNRVVHGLLRWANPYRQPKQTSSPAESCSIWSLYDPVFRES 189
           S+Q ++Q N       ++R+ + ++  LR    + +P  T++ + +C+ W +YD   ++ 
Sbjct: 159 SRQLRNQFN------FSERAAQTLNYPLRDRETFTEPPPTATVSGACTQWEIYDEYIKDL 212

Query: 188 TRQ 180
            RQ
Sbjct: 213 ERQ 215



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>CAN1_MACFA (Q9GLG2) Calpain-1 catalytic subunit (EC 3.4.22.52) (Calpain-1|
           large subunit) (Calcium-activated neutral proteinase 1)
           (CANP 1) (Calpain mu-type) (muCANP) (Micromolar-calpain)
          Length = 714

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -1

Query: 323 INKRSNRVVHGLLRWANPYRQPKQTSSPAESCSIWSLYDPVFRESTR 183
           +N R   V   L+R  NP+ + + T + ++S S W+  DP  RE  R
Sbjct: 282 VNYRGQMV--NLIRMRNPWGEVEWTGAWSDSSSEWNSVDPYEREQLR 326



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>CAN1_BOVIN (Q27970) Calpain-1 catalytic subunit (EC 3.4.22.52) (Calpain-1|
           large subunit) (Calcium-activated neutral proteinase 1)
           (CANP 1) (Calpain mu-type) (muCANP) (Micromolar-calpain)
          Length = 716

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 290 LLRWANPYRQPKQTSSPAESCSIWSLYDPVFRESTR 183
           L+R  NP+ + + T + ++  S W+  DP  RE  R
Sbjct: 291 LIRMRNPWGEVEWTGAWSDGSSEWNAVDPYMREQLR 326



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>TOR1_YEAST (P35169) Phosphatidylinositol 3-kinase TOR1 (EC 2.7.1.137)|
            (PtdIns-3-kinase TOR1) (PI3-kinase TOR1) (PI3K TOR1)
          Length = 2470

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -1

Query: 359  HKSQSNSILTMW---INKRSNRVVHGLLRWANPYRQPKQTSSPAESCSIWSLYDPVFRES 189
            HK   N   T+      K   R ++    W N Y++ K  ++  ++   W +Y  VFR+ 
Sbjct: 1992 HKHLGNEPQTLSEVSFQKSFGRDLNDAYEWLNNYKKSKDINNLNQA---WDIYYNVFRKI 2048

Query: 188  TRQ 180
            TRQ
Sbjct: 2049 TRQ 2051


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,485,687
Number of Sequences: 219361
Number of extensions: 1173302
Number of successful extensions: 2504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2504
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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