ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (... 343 1e-91
2emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-gluc... 78 1e-11
3gb|AY104952.1| Zea mays PCO092342 mRNA sequence 52 6e-04
4gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 2.2
5gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence 40 2.2
6gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence 40 2.2
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 2.2
8emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chro... 40 2.2
9emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 i... 40 2.2
10gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complet... 40 2.2
11gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare str... 40 2.2
12gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Ca... 40 2.2
13gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Can... 40 2.2
14dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.2
15dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.2
16emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 i... 40 2.2
17dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.2
18dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.2
19ref|NM_179895.1| Arabidopsis thaliana unknown protein AT2G34310 ... 38 8.8
20ref|NM_128982.2| Arabidopsis thaliana unknown protein AT2G34310 ... 38 8.8
21ref|NM_179896.1| Arabidopsis thaliana unknown protein AT2G34310 ... 38 8.8
22gb|AF288738.1| Homo sapiens epidermal growth factor receptor (EG... 38 8.8
23gb|AE001397.1| Plasmodium falciparum 3D7 chromosome 2 section 34... 38 8.8
24gb|AC164700.3| Mus musculus BAC clone RP24-548M16 from chromosom... 38 8.8
25gb|AY588246.1| Homo sapiens epidermal growth factor receptor (er... 38 8.8
26gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome 38 8.8
27gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome 38 8.8
28gb|AC006357.5| Homo sapiens PAC clone RP5-1121A15 from 7, comple... 38 8.8
29gb|AC058788.89| Mus musculus strain C57BL/6J clone rp23-284a9 ma... 38 8.8
30emb|Y11732.1|OMTIGHGEN Oreochromis mossambicus tigH gene 38 8.8
31gb|AC151300.2| Xenopus tropicalis clone CH216-107C14, complete s... 38 8.8
32gb|AY136371.1| Arabidopsis thaliana expressed protein (At2g34310... 38 8.8
33dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, comp... 38 8.8
34gb|AC136143.4| Papio anubis clone rp41-5m22, complete sequence 38 8.8
35gb|AC138019.26| Papio anubis clone rp41-133b2, complete sequence 38 8.8
36gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 ma... 38 8.8
37gb|AC068405.5| Homo sapiens chromosome 11, clone RP11-71F16, com... 38 8.8
38gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, com... 38 8.8
39gb|AC105347.4| Homo sapiens BAC clone RP11-719M16 from 4, comple... 38 8.8
40gb|AC025623.8| Homo sapiens chromosome 11, clone RP11-417O17, co... 38 8.8
41dbj|AK085535.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 38 8.8
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
43gb|AC147215.4| Pan troglodytes BAC clone RP43-141N5 from chromos... 38 8.8
44gb|AC006977.3|AC006977 Homo sapiens PAC clone RP5-1091E12 from 7... 38 8.8
45gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 38 8.8
46dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
47dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic D... 38 8.8
48emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 ... 38 8.8
49emb|BX927136.11| Zebrafish DNA sequence from clone DKEY-98O11 in... 38 8.8
50gb|L43967.2| Mycoplasma genitalium G37, complete genome 38 8.8
51gb|AC104548.6| Mus musculus chromosome 5, clone RP24-83N12, comp... 38 8.8
52gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 38 8.8
53gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome 38 8.8
54gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete ge... 38 8.8
55dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 38 8.8
56emb|AL844515.6| Mouse DNA sequence from clone RP23-133G5 on chro... 38 8.8 
>gb|AY677177.1| Hordeum vulgare UDP-D-glucuronate decarboxylase (UXS1) mRNA, complete
            cds
          Length = 1433

 Score =  343 bits (173), Expect = 1e-91
 Identities = 176/177 (99%)
 Strand = Plus / Minus

                                                                        
Query: 2    acgttgctataattgatttagggaagtgcataggctaaaacattaggaccacaagttccg 61
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 acgttgctataattgatttagggaagtgcataggctaaaacattaggaccacaagttccg 1330

                                                                        
Query: 62   cacaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaataatacaat 121
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1329 caaaaagcgggagtaatacaaacagccaggccttgtatataaagtttctaataatacaat 1270

                                                                     
Query: 122  ctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgtaacga 178
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 ctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccgtaacga 1213
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>emb|AJ295156.1|PCO295156 Phragmites communis mRNA for d-TDP-glucose dehydratase (tgp gene)
          Length = 1562

 Score = 77.8 bits (39), Expect = 1e-11
 Identities = 57/63 (90%)
 Strand = Plus / Minus

                                                                        
Query: 113  taatacaatctttcaagtgaacgacaaaggtgtaattggtttattggaactcaaattccg 172
            |||||||||||||||| |||||||||| | |||| |  ||||||||||||||||||||||
Sbjct: 1419 taatacaatctttcaattgaacgacaacgatgtattcagtttattggaactcaaattccg 1360

               
Query: 173  taa 175
            |||
Sbjct: 1359 taa 1357



 Score = 40.1 bits (20), Expect = 2.2
 Identities = 49/56 (87%), Gaps = 2/56 (3%)
 Strand = Plus / Minus

                                                                    
Query: 5    ttgctataattgatttagggaagtgcataggcta-aaacattaggaccacaagttc 59
            |||||||||| |||||||||| || |||| |||| |||||| || |||||||||||
Sbjct: 1522 ttgctataatcgatttaggga-gtacataagctacaaacataagtaccacaagttc 1468
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>gb|AY104952.1| Zea mays PCO092342 mRNA sequence
          Length = 1825

 Score = 52.0 bits (26), Expect = 6e-04
 Identities = 60/70 (85%), Gaps = 1/70 (1%)
 Strand = Plus / Minus

                                                                        
Query: 107  ttctaataatacaatctttcaag-tgaacgacaaaggtgtaattggtttattggaactca 165
            ||||||| |||||||| |||||| ||| |||  ||||| || |  |||||||||||||||
Sbjct: 1684 ttctaatgatacaatccttcaaggtgatcgaagaaggtatattccgtttattggaactca 1625

                      
Query: 166  aattccgtaa 175
            ||||||||||
Sbjct: 1624 aattccgtaa 1615
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 11     taattgatttagggaagtgc 30
              ||||||||||||||||||||
Sbjct: 657464 taattgatttagggaagtgc 657445
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>gb|BT019083.1| Zea mays clone Contig672.F mRNA sequence
          Length = 958

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 156 ttggaactcaaattccgtaa 175
           ||||||||||||||||||||
Sbjct: 921 ttggaactcaaattccgtaa 902
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>gb|U23514.3| Caenorhabditis elegans cosmid F48E8, complete sequence
          Length = 35325

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   aaagtttctaataatacaat 121
             ||||||||||||||||||||
Sbjct: 20319 aaagtttctaataatacaat 20300
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 107     ttctaataatacaatctttcaagtgaacgacaaaggtgta 146
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9412442 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9412403



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 5       ttgctataattgatttagg 23
               |||||||||||||||||||
Sbjct: 9412542 ttgctataattgatttagg 9412524
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>emb|AL592430.8| Human DNA sequence from clone RP11-388P9 on chromosome 10 Contains part
              of the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G)
              and a novel gene, complete sequence
          Length = 145136

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    aaagtttctaataatacaat 121
              ||||||||||||||||||||
Sbjct: 103537 aaagtttctaataatacaat 103518
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>emb|BX908396.13| Zebrafish DNA sequence from clone CH211-267G5 in linkage group 18,
              complete sequence
          Length = 149493

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    taaagtttctaataatacaa 120
              ||||||||||||||||||||
Sbjct: 107638 taaagtttctaataatacaa 107657
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>gb|AC110615.3| Homo sapiens BAC clone RP11-556N4 from 4, complete sequence
          Length = 195101

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 97    tatataaagtttctaataat 116
             ||||||||||||||||||||
Sbjct: 13115 tatataaagtttctaataat 13096
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>gb|AC083942.8| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBa0002D01, from chromosome 3, complete sequence
          Length = 187589

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 107    ttctaataatacaatctttcaagtgaacgacaaaggtgta 146
              ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 109842 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 109803



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 5      ttgctataattgatttagg 23
              |||||||||||||||||||
Sbjct: 109942 ttgctataattgatttagg 109924
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>gb|AC159135.11| Mus musculus 10 BAC RP23-184H24 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 207228

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 gacaaaggtgtaattggttt 154
           ||||||||||||||||||||
Sbjct: 337 gacaaaggtgtaattggttt 318
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>gb|AC159335.10| Mus musculus 10 BAC RP24-447O4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 135177

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   gacaaaggtgtaattggttt 154
             ||||||||||||||||||||
Sbjct: 76946 gacaaaggtgtaattggttt 76927
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                       
Query: 107     ttctaataatacaatctttcaagtgaacgacaaaggtgta 146
               ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 9410563 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 9410524



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 5       ttgctataattgatttagg 23
               |||||||||||||||||||
Sbjct: 9410663 ttgctataattgatttagg 9410645
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>dbj|AK100908.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132F05, full
            insert sequence
          Length = 1811

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 107  ttctaataatacaatctttcaagtgaacgacaaaggtgta 146
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1692 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1653



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 5    ttgctataattgatttagg 23
            |||||||||||||||||||
Sbjct: 1792 ttgctataattgatttagg 1774
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>emb|CT025908.12| Zebrafish DNA sequence from clone CH211-163B1 in linkage group 18,
              complete sequence
          Length = 176163

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    taaagtttctaataatacaa 120
              ||||||||||||||||||||
Sbjct: 165685 taaagtttctaataatacaa 165666
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>dbj|AK061632.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-A03, full
           insert sequence
          Length = 472

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 107 ttctaataatacaatctttcaagtgaacgacaaaggtgta 146
           ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 357 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 318



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 5   ttgctataattgatttagg 23
           |||||||||||||||||||
Sbjct: 457 ttgctataattgatttagg 439
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>dbj|AK060031.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H02, full
            insert sequence
          Length = 1411

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                    
Query: 107  ttctaataatacaatctttcaagtgaacgacaaaggtgta 146
            ||||| ||| ||||| ||||| |||||| |||||||||||
Sbjct: 1303 ttctagtaacacaatatttcaggtgaacaacaaaggtgta 1264



 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 5    ttgctataattgatttagg 23
            |||||||||||||||||||
Sbjct: 1403 ttgctataattgatttagg 1385
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>ref|NM_179895.1| Arabidopsis thaliana unknown protein AT2G34310 transcript variant
           AT2G34310.2 mRNA, complete cds
          Length = 1149

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 aatctttcaagtgaacgac 137
           |||||||||||||||||||
Sbjct: 58  aatctttcaagtgaacgac 76
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>ref|NM_128982.2| Arabidopsis thaliana unknown protein AT2G34310 transcript variant
           AT2G34310.1 mRNA, complete cds
          Length = 1254

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 aatctttcaagtgaacgac 137
           |||||||||||||||||||
Sbjct: 58  aatctttcaagtgaacgac 76
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>ref|NM_179896.1| Arabidopsis thaliana unknown protein AT2G34310 transcript variant
           AT2G34310.3 mRNA, complete cds
          Length = 1130

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 aatctttcaagtgaacgac 137
           |||||||||||||||||||
Sbjct: 58  aatctttcaagtgaacgac 76
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>gb|AF288738.1| Homo sapiens epidermal growth factor receptor (EGFR) gene, complete
             cds, alternatively spliced; and 5S ribosomal RNA gene,
             complete sequence
          Length = 197496

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 149   tggtttattggaactcaaa 167
             |||||||||||||||||||
Sbjct: 97241 tggtttattggaactcaaa 97259
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>gb|AE001397.1| Plasmodium falciparum 3D7 chromosome 2 section 34 of 73 of the
            complete sequence
          Length = 14529

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 98   atataaagtttctaataat 116
            |||||||||||||||||||
Sbjct: 1440 atataaagtttctaataat 1422
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>gb|AC164700.3| Mus musculus BAC clone RP24-548M16 from chromosome 5, complete sequence
          Length = 212172

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     ttgctataattgatttagggaag 27
             |||||||||||||||| ||||||
Sbjct: 91951 ttgctataattgatttggggaag 91929
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>gb|AY588246.1| Homo sapiens epidermal growth factor receptor (erythroblastic leukemia
             viral (v-erb-b) oncogene homolog, avian) (EGFR) gene,
             complete cds
          Length = 192168

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 149   tggtttattggaactcaaa 167
             |||||||||||||||||||
Sbjct: 89958 tggtttattggaactcaaa 89976
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>gb|AE017244.1| Mycoplasma hyopneumoniae 7448, complete genome
          Length = 920079

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 24     gaagtgcataggctaaaacatta 46
              ||||| |||||||||||||||||
Sbjct: 821873 gaagttcataggctaaaacatta 821895
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>gb|AE017243.1| Mycoplasma hyopneumoniae J, complete genome
          Length = 897405

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 24     gaagtgcataggctaaaacatta 46
              ||||| |||||||||||||||||
Sbjct: 805179 gaagttcataggctaaaacatta 805201
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>gb|AC006357.5| Homo sapiens PAC clone RP5-1121A15 from 7, complete sequence
          Length = 130492

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     ttgctataattgatttagggaag 27
             |||||||||||||||| ||||||
Sbjct: 23860 ttgctataattgatttggggaag 23838
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>gb|AC058788.89| Mus musculus strain C57BL/6J clone rp23-284a9 map 5, complete sequence
          Length = 200015

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     ttgctataattgatttagggaag 27
             |||||||||||||||| ||||||
Sbjct: 18509 ttgctataattgatttggggaag 18487
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>emb|Y11732.1|OMTIGHGEN Oreochromis mossambicus tigH gene
          Length = 5570

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 97   tatataaagtttctaataa 115
            |||||||||||||||||||
Sbjct: 2362 tatataaagtttctaataa 2380
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>gb|AC151300.2| Xenopus tropicalis clone CH216-107C14, complete sequence
          Length = 134023

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 5     ttgctataattgatttagggaag 27
             |||||||||||||||| ||||||
Sbjct: 30334 ttgctataattgatttggggaag 30356
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>gb|AY136371.1| Arabidopsis thaliana expressed protein (At2g34310) mRNA, complete
           cds
          Length = 1111

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 119 aatctttcaagtgaacgac 137
           |||||||||||||||||||
Sbjct: 20  aatctttcaagtgaacgac 38
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>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 127     aagtgaacgacaaaggtgt 145
               |||||||||||||||||||
Sbjct: 1777873 aagtgaacgacaaaggtgt 1777855
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>gb|AC136143.4| Papio anubis clone rp41-5m22, complete sequence
          Length = 186148

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 79     acaaacagccaggccttgt 97
              |||||||||||||||||||
Sbjct: 177884 acaaacagccaggccttgt 177866
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>gb|AC138019.26| Papio anubis clone rp41-133b2, complete sequence
          Length = 204007

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 79     acaaacagccaggccttgt 97
              |||||||||||||||||||
Sbjct: 129387 acaaacagccaggccttgt 129405
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>gb|AC004481.3| Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete
             sequence
          Length = 112763

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 119   aatctttcaagtgaacgac 137
             |||||||||||||||||||
Sbjct: 50392 aatctttcaagtgaacgac 50374
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>gb|AC068405.5| Homo sapiens chromosome 11, clone RP11-71F16, complete sequence
          Length = 154774

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     tgcataggctaaaacatta 46
              |||||||||||||||||||
Sbjct: 112936 tgcataggctaaaacatta 112954
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>gb|AC103794.2| Homo sapiens chromosome 11, clone CTD-3096P4, complete sequence
          Length = 211445

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     tgcataggctaaaacatta 46
              |||||||||||||||||||
Sbjct: 204126 tgcataggctaaaacatta 204108
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>gb|AC105347.4| Homo sapiens BAC clone RP11-719M16 from 4, complete sequence
          Length = 69570

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 94   ttgtatataaagtttctaa 112
            |||||||||||||||||||
Sbjct: 8271 ttgtatataaagtttctaa 8289
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>gb|AC025623.8| Homo sapiens chromosome 11, clone RP11-417O17, complete sequence
          Length = 151329

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     tgcataggctaaaacatta 46
              |||||||||||||||||||
Sbjct: 127321 tgcataggctaaaacatta 127303
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>dbj|AK085535.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630038O13 product:unclassifiable, full
           insert sequence
          Length = 933

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 87  ccaggccttgtatataaag 105
           |||||||||||||||||||
Sbjct: 77  ccaggccttgtatataaag 95
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 97       tatataaagtttctaataa 115
                |||||||||||||||||||
Sbjct: 23983330 tatataaagtttctaataa 23983348
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>gb|AC147215.4| Pan troglodytes BAC clone RP43-141N5 from chromosome 7, complete
             sequence
          Length = 179309

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 5     ttgctataattgatttagggaag 27
             |||||||||||||||| ||||||
Sbjct: 33466 ttgctataattgatttggggaag 33488
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>gb|AC006977.3|AC006977 Homo sapiens PAC clone RP5-1091E12 from 7p11.2-p21, complete sequence
          Length = 177998

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 149   tggtttattggaactcaaa 167
             |||||||||||||||||||
Sbjct: 97241 tggtttattggaactcaaa 97259
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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 101    taaagtttctaataataca 119
              |||||||||||||||||||
Sbjct: 195220 taaagtttctaataataca 195238
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>dbj|AP004063.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1476_F05
          Length = 125426

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 97    tatataaagtttctaataa 115
             |||||||||||||||||||
Sbjct: 18368 tatataaagtttctaataa 18386
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>dbj|AP004881.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0496E03
          Length = 138622

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 97     tatataaagtttctaataa 115
              |||||||||||||||||||
Sbjct: 117294 tatataaagtttctaataa 117312
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>emb|CR847994.10| Zebrafish DNA sequence from clone CH211-203H15 in linkage group 4,
            complete sequence
          Length = 100991

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 13   attgatttagggaagtgca 31
            |||||||||||||||||||
Sbjct: 7951 attgatttagggaagtgca 7933
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>emb|BX927136.11| Zebrafish DNA sequence from clone DKEY-98O11 in linkage group 18,
             complete sequence
          Length = 93818

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   aaagtttctaataatacaa 120
             |||||||||||||||||||
Sbjct: 12691 aaagtttctaataatacaa 12709
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>gb|L43967.2| Mycoplasma genitalium G37, complete genome
          Length = 580076

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 102    aaagtttctaataatacaa 120
              |||||||||||||||||||
Sbjct: 343728 aaagtttctaataatacaa 343710
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>gb|AC104548.6| Mus musculus chromosome 5, clone RP24-83N12, complete sequence
          Length = 214247

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 5     ttgctataattgatttagggaag 27
             |||||||||||||||| ||||||
Sbjct: 55672 ttgctataattgatttggggaag 55694
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>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 127     aagtgaacgacaaaggtgt 145
               |||||||||||||||||||
Sbjct: 1190230 aagtgaacgacaaaggtgt 1190212
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>gb|AE017332.1| Mycoplasma hyopneumoniae 232, complete genome
          Length = 892758

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 24     gaagtgcataggctaaaacatta 46
              ||||| |||||||||||||||||
Sbjct: 798171 gaagttcataggctaaaacatta 798193
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>gb|L77117.1| Methanocaldococcus jannaschii DSM 2661, complete genome
          Length = 1664970

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 16     gatttagggaagtgcatag 34
              |||||||||||||||||||
Sbjct: 161683 gatttagggaagtgcatag 161665
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>dbj|AP005329.3| Homo sapiens genomic DNA, chromosome 18 clone:RP13-270P17, complete
             sequence
          Length = 178812

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    aaaacattaggaccacaag 56
             |||||||||||||||||||
Sbjct: 10038 aaaacattaggaccacaag 10056
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>emb|AL844515.6| Mouse DNA sequence from clone RP23-133G5 on chromosome 2, complete
             sequence
          Length = 216464

 Score = 38.2 bits (19), Expect = 8.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 116   tacaatctttcaagtgaac 134
             |||||||||||||||||||
Sbjct: 79108 tacaatctttcaagtgaac 79126


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,635,304
Number of Sequences: 3902068
Number of extensions: 1635304
Number of successful extensions: 107999
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107686
Number of HSP's gapped (non-prelim): 313
length of query: 179
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 157
effective length of database: 17,147,199,772
effective search space: 2692110364204
effective search space used: 2692110364204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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