ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase ... 215 2e-56
2PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6... 40 0.002
3PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase p... 33 0.16
4Y2577_MYCTU (Q50644) Hypothetical protein Rv2577/MT2654 30 1.4
5NRX4_DROME (Q94887) Neurexin-4 precursor (Neurexin IV) 30 1.8
6VG37_BPT4 (P03744) Long tail fiber protein p37 (Protein Gp37) (R... 30 1.8
7DSCAM_HUMAN (O60469) Down syndrome cell adhesion molecule precur... 29 3.1
8YG35_BPLLH (Q04769) Hypothetical 13.3 kDa protein in G34 3'regio... 28 5.3
9GBLP_DROME (O18640) Guanine nucleotide-binding protein beta subu... 28 5.3
10UVRC_GEOKA (Q5KWH6) UvrABC system protein C (Protein uvrC) (Exci... 28 6.9
11ECR_DROME (P34021) Ecdysone receptor (Ecdysteroid receptor) (20-... 28 6.9
12RLP1_SCHPO (O74331) DNA-repair protein rlp1 (RecA-like protein 1) 28 6.9

>NPP_HORVU (Q687E1) Nucleotide pyrophosphatase/phosphodiesterase (EC 3.-.-.-)|
           (Fragments)
          Length = 368

 Score =  215 bits (547), Expect = 2e-56
 Identities = 99/111 (89%), Positives = 103/111 (92%)
 Frame = -3

Query: 394 HNYERTCPLYQSQCVNNEKSHYSGTMNGTIFVVAGGGGSHLSSYAMAIPKWSLFRDLDYG 215
           HNYERTCPLYQSQCVN +K+HYSGTMNGTIFVVAGGGGSHLSSY  AIPKWS+FRD DYG
Sbjct: 257 HNYERTCPLYQSQCVNADKTHYSGTMNGTIFVVAGGGGSHLSSYTTAIPKWSIFRDHDYG 316

Query: 214 FVKLTSFNHSSLLFEYKKSSDGNVYDSFTIQRDYRDVLSCVHDSCFPTTLA 62
           F KLT+FNHSSLLFEY KSSDG VYDSFTI RDYRDVLSCVHDSCFPTTLA
Sbjct: 317 FTKLTAFNHSSLLFEYMKSSDGKVYDSFTIHRDYRDVLSCVHDSCFPTTLA 367



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>PPA_ASPFI (Q12546) Acid phosphatase precursor (EC 3.1.3.2) (pH 6-optimum acid|
           phosphatase) (APase6)
          Length = 614

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
 Frame = -3

Query: 394 HNYERTCPL-----YQSQCVNNEKSHYSGTMNGTIFVVAGGGG-----SHLSSYAMAIPK 245
           H YER  PL       +  + N  ++Y+        ++ G  G     S  S        
Sbjct: 501 HWYERLYPLGANGTIDTAAIVNNNTYYAHNGKSITHIINGMAGNIESHSEFSDGEGLTNI 560

Query: 244 WSLFRDLDYGFVKLTSFNHSSLLFEYKKSSDGNVYDSFTI 125
            +L   + YGF KLT FN ++L +E  +  DG V DS T+
Sbjct: 561 TALLDKVHYGFSKLTIFNETALKWELIRGDDGTVGDSLTL 600



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>PPAF_ARATH (Q38924) Iron(III)-zinc(II) purple acid phosphatase precursor (EC|
           3.1.3.2) (PAP)
          Length = 469

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -3

Query: 307 IFVVAGGGGSH---LSSYAMAIPKWSLFRDLDYGFVKLTSFNHSSLLFEYKKSSDGN 146
           I++  G GG+    L+      PK+S FR+  +G   L   N +   F + ++ DGN
Sbjct: 388 IYITIGDGGNSEGLLTDMMQPQPKYSAFREASFGHGLLEIKNRTHAYFSWNRNQDGN 444



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>Y2577_MYCTU (Q50644) Hypothetical protein Rv2577/MT2654|
          Length = 529

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 38/100 (38%)
 Frame = -3

Query: 394 HNYERTCPLYQSQCVNNE-------KSHYSGTMNGTIFVVAGGGGSHLSSYAMAIPK--- 245
           H+YER+ PL  +   +         +S    +  GT+ +V GGGG+   + A+  P+   
Sbjct: 387 HHYERSHPLRGALGTDTRTPIPVDTRSDLIDSTRGTVHLVIGGGGTSKPTNALLFPQPRC 446

Query: 244 --------------------------WSLFRDLD--YGFV 209
                                     WS FRD D  YGFV
Sbjct: 447 QVITGVGDFDPAIRRKPSIFVLEDAPWSAFRDRDNPYGFV 486



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>NRX4_DROME (Q94887) Neurexin-4 precursor (Neurexin IV)|
          Length = 1284

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 22/75 (29%), Positives = 34/75 (45%)
 Frame = -3

Query: 316 NGTIFVVAGGGGSHLSSYAMAIPKWSLFRDLDYGFVKLTSFNHSSLLFEYKKSSDGNVYD 137
           NG +    G  G +   YA+ +    +  +LD G   +TS +  SLL       D NV+ 
Sbjct: 226 NGVMMYSRGTQGDY---YALQLKDNKMVLNLDLGSRVMTSLSVGSLL-------DDNVWH 275

Query: 136 SFTIQRDYRDVLSCV 92
              I R+ RD++  V
Sbjct: 276 DVVISRNQRDIIFSV 290



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>VG37_BPT4 (P03744) Long tail fiber protein p37 (Protein Gp37) (Receptor|
            recognizing protein)
          Length = 1026

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/36 (44%), Positives = 20/36 (55%)
 Frame = -3

Query: 361  SQCVNNEKSHYSGTMNGTIFVVAGGGGSHLSSYAMA 254
            S   N E SHY    NGT     G GG+ +SSYA++
Sbjct: 922  STSTNGEHSHYIEAWNGT-----GVGGNKMSSYAIS 952



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>DSCAM_HUMAN (O60469) Down syndrome cell adhesion molecule precursor (CHD2)|
          Length = 2012

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 211 VKLTSFNHSSLLFEYKKSSDGNVYDSF 131
           V++T  NH +L+ ++   SDG  Y  F
Sbjct: 360 VRITGINHENLIMDHMVKSDGGAYQCF 386



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>YG35_BPLLH (Q04769) Hypothetical 13.3 kDa protein in G34 3'region (ORF5)|
           (ORF118)
          Length = 118

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 11/77 (14%)
 Frame = -3

Query: 388 YERTCPLYQ---SQCVNNEKSHYSGTMNGTIFVVAGGGGSHLSSYAMAIPKWS------- 239
           Y RT P ++   ++CV N ++ YSGT N    +VA G     + Y+  IP  +       
Sbjct: 28  YGRTVPTWEGDITKCVVNMQTTYSGT-NNDRQIVANGLIVMYAGYSNPIPTLTKENLGSK 86

Query: 238 -LFRDLDYGFVKLTSFN 191
             ++ LDY    L  F+
Sbjct: 87  LTYQGLDYTVTSLNRFD 103



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>GBLP_DROME (O18640) Guanine nucleotide-binding protein beta subunit-like|
           protein (Receptor of activated protein kinase C homolog)
          Length = 318

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 244 WSLFRDLD--YGFVKLTSFNHSSLLFEYKKSSDGN 146
           W L RD D  YG+ +   + HS  + +   SSDGN
Sbjct: 43  WKLTRDEDTNYGYPQKRLYGHSHFISDVVLSSDGN 77



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>UVRC_GEOKA (Q5KWH6) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 590

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -3

Query: 250 PKWSLFR--DLDYGFVKLTSFNHSSLLFEYKKSSDGNVY 140
           PK+++    D  Y F+K+T+  H  LL   K   DG  Y
Sbjct: 87  PKYNVMLKDDKSYPFIKITAEKHPRLLITRKVKKDGGKY 125



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>ECR_DROME (P34021) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
          Length = 878

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = -3

Query: 334 HYSGTMNGTIFVVAGGGG 281
           H +GT NG I VV GGGG
Sbjct: 180 HANGTPNGLIGVVGGGGG 197



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>RLP1_SCHPO (O74331) DNA-repair protein rlp1 (RecA-like protein 1)|
          Length = 363

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 11/67 (16%)
 Frame = -3

Query: 343 EKSHYSGTMNGTIFVVAGGGGS-------HLSSYAMAIPKWSLF----RDLDYGFVKLTS 197
           EK  YSG++NGT+ V+ G   S       HL+S  +      L      + D+   +LT 
Sbjct: 32  EKVLYSGSVNGTLLVIEGNSCSGKTELLYHLASNVLLRSSQELVLIVSSEWDWSIKRLTF 91

Query: 196 FNHSSLL 176
             H  L+
Sbjct: 92  ILHERLI 98


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,553,461
Number of Sequences: 219361
Number of extensions: 780448
Number of successful extensions: 2208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2207
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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