ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44g06 |
|---|---|
| Clone Library Name | barley_pub |
>SERC_RALSO (Q8Y0Z0) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 378 Score = 32.3 bits (72), Expect = 0.71 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%) Frame = -2 Query: 402 VLIDSLNELLSWLSKGLITVKISHTYRLTEAHL--AFADLRDRKAV 271 VL + E+LSW G+ +++SH R E+ + AFADLR+ AV Sbjct: 29 VLEQAREEMLSWQGSGMSVMEMSHRGREFESIMAQAFADLRELLAV 74
>SERC_PSEST (Q9RI02) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 8/65 (12%) Frame = -2 Query: 405 AVLIDSLNELLSWLSKGLITVKISHTYRLTEAHLAFA-----DLRDRKAVG---KVMIVM 250 AVL + ELL W +GL +++SH ++A++A A DLRD A+ KV+ + Sbjct: 18 AVLQRAQAELLDWQGRGLSVMEMSHR---SDAYVAIAEKAEQDLRDLMAIPSDYKVLFLQ 74 Query: 249 GSSAK 235 G +++ Sbjct: 75 GGASQ 79
>SERC_PSESM (Q885T5) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 361 Score = 30.8 bits (68), Expect = 2.1 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 5/62 (8%) Frame = -2 Query: 405 AVLIDSLNELLSWLSKGLITVKISHTYR--LTEAHLAFADLRDRKAVG---KVMIVMGSS 241 AVL+ + ELL W KGL +++SH ++ A+ A DLRD ++ KV+ + G + Sbjct: 18 AVLLRAQAELLDWHGKGLSVMEMSHRSDEFVSIANKAEQDLRDLLSIPSNYKVLFLQGGA 77 Query: 240 AK 235 ++ Sbjct: 78 SQ 79
>QOR_YEAST (P38230) Probable quinone oxidoreductase (EC 1.6.5.5)| (NADPH:quinone reductase) Length = 334 Score = 30.8 bits (68), Expect = 2.1 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -2 Query: 384 NELLSWLSKGLITVKISHTYRLTEAHLAFADLRDRKAVGKVMI 256 +E ++ + +KI TY L + A AD+ RK VGK+++ Sbjct: 288 DEFFGLVNSKKLNIKIYKTYPLRDYRTAAADIESRKTVGKLVL 330
>SERC_HAEIN (P44336) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 362 Score = 30.4 bits (67), Expect = 2.7 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Frame = -2 Query: 408 PAVLIDSLNELLSWLSKGLITVKISH--TYRLTEAHLAFADLRD 283 P VL + NEL++WL++G+ +++SH Y + A DLR+ Sbjct: 16 PEVLQKAQNELINWLNQGVSVMEVSHRGKYFMELVTQAEKDLRE 59
>SERC_MANSM (Q65S80) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 361 Score = 29.6 bits (65), Expect = 4.6 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Frame = -2 Query: 408 PAVLIDSLNELLSWLSKGLITVKISHTYR-----LTEAHLAFADLRDRKAVGKVMIVMGS 244 PAVL + ELL+W +G +++SH + +T+A F +L + K++ + G Sbjct: 16 PAVLKKAQEELLNWQGQGTSVMEVSHRGKYFMELITQADKDFRELYNIPENYKILFLQGG 75 Query: 243 S 241 + Sbjct: 76 A 76
>RL17_XANCP (Q9Z3E6) 50S ribosomal protein L17| Length = 127 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -2 Query: 306 LAFADLRDRKAVGKVMIVMGSSAKSR 229 LAFA LRD++AVGK+ + +G +R Sbjct: 65 LAFARLRDKEAVGKLFVELGPRYATR 90
>SERC_ACIAD (Q6F961) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)| Length = 359 Score = 28.9 bits (63), Expect = 7.8 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 2/42 (4%) Frame = -2 Query: 405 AVLIDSLNELLSWLSKGLITVKISHTYR--LTEAHLAFADLR 286 AVL + ELL W KGL +++SH + + A A ADLR Sbjct: 16 AVLEKAQQELLDWQGKGLSIMEMSHRSKDYVAVAEKAEADLR 57
>YGIQ_SHIFL (Q83JL2) UPF0313 protein ygiQ| Length = 739 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = -2 Query: 492 VPVIRANIALIKNWTIHGLYWGSYLIHRPAVLIDSLNELLSWLSKGLITVKISHTYRLTE 313 VPVI I T H YW + R +VL+DS ++L + + V+++H + E Sbjct: 155 VPVILGGIEASLRRTAHYDYWSDTV--RRSVLVDSKADMLMFGNGERPLVEVAHRLAMGE 212 Query: 312 AHLAFADLRDRKAVGK 265 D+R+ + K Sbjct: 213 PISEIRDVRNTAIIVK 228
>YGIQ_ECOLI (Q46861) UPF0313 protein ygiQ| Length = 739 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = -2 Query: 492 VPVIRANIALIKNWTIHGLYWGSYLIHRPAVLIDSLNELLSWLSKGLITVKISHTYRLTE 313 VPVI I T H YW + R +VL+DS ++L + + V+++H + E Sbjct: 155 VPVILGGIEASLRRTAHYDYWSDTV--RRSVLVDSKADMLMFGNGERPLVEVAHRLAMGE 212 Query: 312 AHLAFADLRDRKAVGK 265 D+R+ + K Sbjct: 213 PISEIRDVRNTAIIVK 228
>YGIQ_ECOL6 (Q8FDK9) UPF0313 protein ygiQ| Length = 739 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = -2 Query: 492 VPVIRANIALIKNWTIHGLYWGSYLIHRPAVLIDSLNELLSWLSKGLITVKISHTYRLTE 313 VPVI I T H YW + R +VL+DS ++L + + V+++H + E Sbjct: 155 VPVILGGIEASLRRTAHYDYWSDTV--RRSVLVDSKADMLMFGNGERPLVEVAHRLAMGE 212 Query: 312 AHLAFADLRDRKAVGK 265 D+R+ + K Sbjct: 213 PISEIRDVRNTAIIVK 228
>YGIQ_ECO57 (Q8XBS7) UPF0313 protein ygiQ| Length = 739 Score = 28.9 bits (63), Expect = 7.8 Identities = 21/76 (27%), Positives = 35/76 (46%) Frame = -2 Query: 492 VPVIRANIALIKNWTIHGLYWGSYLIHRPAVLIDSLNELLSWLSKGLITVKISHTYRLTE 313 VPVI I T H YW + R +VL+DS ++L + + V+++H + E Sbjct: 155 VPVILGGIEASLRRTAHYDYWSDTV--RRSVLVDSKADMLMFGNGERPLVEVAHRLAMGE 212 Query: 312 AHLAFADLRDRKAVGK 265 D+R+ + K Sbjct: 213 PISEIRDVRNTAIIVK 228 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,392,359 Number of Sequences: 219361 Number of extensions: 1280644 Number of successful extensions: 2899 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2834 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2899 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
