ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44g06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence 236 6e-59
2gb|AY110644.1| Zea mays CL6173_1 mRNA sequence 212 8e-52
3gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome... 117 4e-23
4gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome... 117 4e-23
5dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 117 4e-23
6ref|NM_115504.3| Arabidopsis thaliana oxidoreductase/ zinc ion b... 58 3e-05
7gb|BT000937.1| Arabidopsis thaliana clone C105264 putative quino... 58 3e-05
8gb|AY090974.1| Arabidopsis thaliana At3g56460 mRNA sequence 58 3e-05
9dbj|AK221446.1| Arabidopsis thaliana mRNA for quinone reductase-... 58 3e-05
10emb|BX825538.1|CNS0A6ED Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
11emb|BX823692.1|CNS0A6LA Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
12emb|BX823257.1|CNS0A6OE Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
13emb|BX826038.1|CNS0A6AW Arabidopsis thaliana Full-length cDNA Co... 58 3e-05
14emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chro... 42 1.7
15gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence 42 1.7
16gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, co... 40 6.7
17gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome ... 40 6.7
18ref|XM_725353.1| Plasmodium yoelii yoelii str. 17XNL multidrug r... 40 6.7
19gb|AC156574.2| Mus musculus BAC clone RP23-54L14 from chromosome... 40 6.7
20emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4,... 40 6.7
21dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.7
22emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.7
23gb|AC123880.18| Mus musculus chromosome 3, clone RP23-225M12, co... 40 6.7
24dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 6.7
25emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chr... 40 6.7 
>gb|BT017252.1| Zea mays clone EL01N0307G08.c mRNA sequence
          Length = 1296

 Score =  236 bits (119), Expect = 6e-59
 Identities = 221/255 (86%)
 Strand = Plus / Minus

                                                                        
Query: 239  gctgaggagcccataacaatcatcactttgccgacggctttcctatctctcaagtcagca 298
            ||||||||| |||| ||||||||||||||||| || || ||||||||||||| | |||  
Sbjct: 1073 gctgaggaggccattacaatcatcactttgccaaccgccttcctatctctcagggcagag 1014

                                                                        
Query: 299  aaagcgagatgggcctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccc 358
            ||||| |||||| |||||   || ||||||  ||||||||||| ||||||||||| ||||
Sbjct: 1013 aaagcaagatggacctcaacaagtctgtagcagtgtgaaatttgaactgttatcagaccc 954

                                                                        
Query: 359  tttgaaagccatgacaggagttcgttaagtgagtcgatgagtactgctggccggtgaatt 418
            |||||||||||||||| |||||| || || || || |||||||||  |||||||||| ||
Sbjct: 953  tttgaaagccatgacaagagttcattgagcgaatcaatgagtacttgtggccggtgagtt 894

                                                                        
Query: 419  aagtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagct 478
            ||||||||||||||||||| |||||||| |||||||||||||| ||| ||||| || |||
Sbjct: 893  aagtagcttccccagtacaaaccatgaactgtccagttcttaacaagagcaatattcgct 834

                           
Query: 479  cgaataactggaaca 493
            |||||||||||||||
Sbjct: 833  cgaataactggaaca 819
to top
>gb|AY110644.1| Zea mays CL6173_1 mRNA sequence
          Length = 963

 Score =  212 bits (107), Expect = 8e-52
 Identities = 218/255 (85%)
 Strand = Plus / Minus

                                                                       
Query: 239 gctgaggagcccataacaatcatcactttgccgacggctttcctatctctcaagtcagca 298
           |||||||||||||| ||||||||||||||||| || || ||||||||||||| | |||  
Sbjct: 307 gctgaggagcccattacaatcatcactttgccaaccgccttcctatctctcagggcagag 248

                                                                       
Query: 299 aaagcgagatgggcctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccc 358
           ||||| |||||| |||||   || ||||||  | | ||||||| ||||| ||||| ||||
Sbjct: 247 aaagcaagatggacctcaacaagtctgtagcagggggaaatttgaactggtatcagaccc 188

                                                                       
Query: 359 tttgaaagccatgacaggagttcgttaagtgagtcgatgagtactgctggccggtgaatt 418
           |||||||||||||||| |||||| || || || || |||||||||  |||||||||| ||
Sbjct: 187 tttgaaagccatgacaagagttcattgagcgaatcaatgagtacttgtggccggtgagtt 128

                                                                       
Query: 419 aagtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagct 478
           ||||||||||||||||||| |||||||| || ||||||||||| ||| ||||| || |||
Sbjct: 127 aagtagcttccccagtacaaaccatgaactggccagttcttaacaagagcaatattcgct 68

                          
Query: 479 cgaataactggaaca 493
           |||||||||||||||
Sbjct: 67  cgaataactggaaca 53
to top
>gb|AC104271.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1308_D01,
            complete sequence
          Length = 117724

 Score =  117 bits (59), Expect = 4e-23
 Identities = 125/147 (85%)
 Strand = Plus / Minus

                                                                        
Query: 312  cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 371
            |||||| ||||||||| ||||| ||||| |  | | ||||||| ||||||||||||||||
Sbjct: 8178 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 8119

                                                                        
Query: 372  acaggagttcgttaagtgagtcgatgagtactgctggccggtgaattaagtagcttcccc 431
            | | |||||| || || ||||| |||||||| | |||||| ||| | |||||||||||||
Sbjct: 8118 aaaagagttcattgagggagtcaatgagtacaggtggccgatgagtgaagtagcttcccc 8059

                                       
Query: 432  agtacagaccatgaattgtccagttct 458
            |||||| ||||||||||||||| ||||
Sbjct: 8058 agtacaaaccatgaattgtccaattct 8032



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                        
Query: 225  agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 284
            ||||||||||||||||||  |||||||| |||||||||||||| || ||||| ||||| |
Sbjct: 8938 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 8879

                                          
Query: 285  ctctcaagtcagcaaaagcgagatgggcct 314
            |||||| | | || ||||||||||| ||||
Sbjct: 8878 ctctcagggctgcgaaagcgagatgtgcct 8849
to top
>gb|AC136225.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0022L07,
              complete sequence
          Length = 142134

 Score =  117 bits (59), Expect = 4e-23
 Identities = 125/147 (85%)
 Strand = Plus / Minus

                                                                          
Query: 312    cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 371
              |||||| ||||||||| ||||| ||||| |  | | ||||||| ||||||||||||||||
Sbjct: 138725 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 138666

                                                                          
Query: 372    acaggagttcgttaagtgagtcgatgagtactgctggccggtgaattaagtagcttcccc 431
              | | |||||| || || ||||| |||||||| | |||||| ||| | |||||||||||||
Sbjct: 138665 aaaagagttcattgagggagtcaatgagtacaggtggccgatgagtgaagtagcttcccc 138606

                                         
Query: 432    agtacagaccatgaattgtccagttct 458
              |||||| ||||||||||||||| ||||
Sbjct: 138605 agtacaaaccatgaattgtccaattct 138579



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                          
Query: 225    agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 284
              ||||||||||||||||||  |||||||| |||||||||||||| || ||||| ||||| |
Sbjct: 139485 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 139426

                                            
Query: 285    ctctcaagtcagcaaaagcgagatgggcct 314
              |||||| | | || ||||||||||| ||||
Sbjct: 139425 ctctcagggctgcgaaagcgagatgtgcct 139396
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  117 bits (59), Expect = 4e-23
 Identities = 125/147 (85%)
 Strand = Plus / Minus

                                                                            
Query: 312      cctcagtgagcctgtaggtgtgtgaaattttaactgttatcaaaccctttgaaagccatg 371
                |||||| ||||||||| ||||| ||||| |  | | ||||||| ||||||||||||||||
Sbjct: 14279392 cctcagggagcctgtaagtgtgggaaatctggatttttatcaacccctttgaaagccatg 14279333

                                                                            
Query: 372      acaggagttcgttaagtgagtcgatgagtactgctggccggtgaattaagtagcttcccc 431
                | | |||||| || || ||||| |||||||| | |||||| ||| | |||||||||||||
Sbjct: 14279332 aaaagagttcattgagggagtcaatgagtacaggtggccgatgagtgaagtagcttcccc 14279273

                                           
Query: 432      agtacagaccatgaattgtccagttct 458
                |||||| ||||||||||||||| ||||
Sbjct: 14279272 agtacaaaccatgaattgtccaattct 14279246



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 78/90 (86%)
 Strand = Plus / Minus

                                                                            
Query: 225      agagtcttgattttgctgaggagcccataacaatcatcactttgccgacggctttcctat 284
                ||||||||||||||||||  |||||||| |||||||||||||| || ||||| ||||| |
Sbjct: 14280152 agagtcttgattttgctggtgagcccatcacaatcatcactttaccaacggccttcctgt 14280093

                                              
Query: 285      ctctcaagtcagcaaaagcgagatgggcct 314
                |||||| | | || ||||||||||| ||||
Sbjct: 14280092 ctctcagggctgcgaaagcgagatgtgcct 14280063
to top
>ref|NM_115504.3| Arabidopsis thaliana oxidoreductase/ zinc ion binding AT3G56460
           mRNA, complete cds
          Length = 1443

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 905 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 849
to top
>gb|BT000937.1| Arabidopsis thaliana clone C105264 putative quinone reductase
           (At3g56460) mRNA, complete cds
          Length = 1078

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 843 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 787
to top
>gb|AY090974.1| Arabidopsis thaliana At3g56460 mRNA sequence
          Length = 1421

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 902 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 846
to top
>dbj|AK221446.1| Arabidopsis thaliana mRNA for quinone reductase-like protein,
           complete cds, clone: RAFL06-83-H18
          Length = 1348

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 905 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 849
to top
>emb|BX825538.1|CNS0A6ED Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL42ZH09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1066

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 717 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 661
to top
>emb|BX823692.1|CNS0A6LA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS68ZB08 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1288

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 890 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 834
to top
>emb|BX823257.1|CNS0A6OE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS17ZF09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 616

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 298 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 242
to top
>emb|BX826038.1|CNS0A6AW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL80ZG12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 991

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 421 gtagcttccccagtacagaccatgaattgtccagttcttaataagtgcaatgttagc 477
           |||||| |||||||| ||||||||||  ||||||||||||| |||||| || |||||
Sbjct: 673 gtagctaccccagtaaagaccatgaaccgtccagttcttaacaagtgctatattagc 617
to top
>emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chromosome 1 Contains the
            gene for Fc receptor-like protein 3 (FCRH3), a novel
            gene, a pseudogene similar to part of SON DNA binding
            protein (SON), a voltage-dependent anion channel 1
            (VDAC1) pseudogene, the SPAP1 gene for SH2 domain
            containing phosphatase anchor protein 1 and the 3' end of
            the gene for Fc receptor-like protein 1 (FCRH1), complete
            sequence
          Length = 160356

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 236  tttgctgaggagcccataaca 256
            |||||||||||||||||||||
Sbjct: 5074 tttgctgaggagcccataaca 5094
to top
>gb|BT024007.1| Zea mays clone EL01N0403A09 mRNA sequence
          Length = 1758

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 67  tcagcacataacttatacaaa 87
           |||||||||||||||||||||
Sbjct: 584 tcagcacataacttatacaaa 564
to top
>gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, complete sequence
          Length = 218224

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 311    gcctcagtgagcctgtaggt 330
              ||||||||||||||||||||
Sbjct: 195030 gcctcagtgagcctgtaggt 195049
to top
>gb|AC124579.3| Mus musculus BAC clone RP23-86P2 from chromosome 13, complete sequence
          Length = 167801

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   aggagcccataacaatcatc 262
             ||||||||||||||||||||
Sbjct: 76070 aggagcccataacaatcatc 76051
to top
>ref|XM_725353.1| Plasmodium yoelii yoelii str. 17XNL multidrug resistance protein
            (PY00245) partial mRNA
          Length = 4266

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   tgcaacatctatgaagaatt 114
            ||||||||||||||||||||
Sbjct: 3618 tgcaacatctatgaagaatt 3637
to top
>gb|AC156574.2| Mus musculus BAC clone RP23-54L14 from chromosome 14, complete sequence
          Length = 208155

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    agggaacacattcatcagag 228
              ||||||||||||||||||||
Sbjct: 195371 agggaacacattcatcagag 195352
to top
>emb|AL606606.3|OSJN00046 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0005B05,
              complete sequence
          Length = 149134

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    atctgcagctgaaaagaact 196
              ||||||||||||||||||||
Sbjct: 105003 atctgcagctgaaaagaact 105022
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 177     atctgcagctgaaaagaact 196
               ||||||||||||||||||||
Sbjct: 6942132 atctgcagctgaaaagaact 6942151
to top
>emb|AL442110.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0512B01, complete
              sequence
          Length = 140069

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    atctgcagctgaaaagaact 196
              ||||||||||||||||||||
Sbjct: 136102 atctgcagctgaaaagaact 136121
to top
>gb|AC123880.18| Mus musculus chromosome 3, clone RP23-225M12, complete sequence
          Length = 224562

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 311   gcctcagtgagcctgtaggt 330
             ||||||||||||||||||||
Sbjct: 48664 gcctcagtgagcctgtaggt 48683
to top
>dbj|AP006667.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT31L14, TM0366,
             complete sequence
          Length = 100936

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 336   aaattttaactgttatcaaa 355
             ||||||||||||||||||||
Sbjct: 95639 aaattttaactgttatcaaa 95658
to top
>emb|AL772326.5| Mouse DNA sequence from clone RP23-267E14 on chromosome 4, complete
            sequence
          Length = 165398

 Score = 40.1 bits (20), Expect = 6.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 167  attctgcagaatctgcagct 186
            ||||||||||||||||||||
Sbjct: 5433 attctgcagaatctgcagct 5452


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,229,237
Number of Sequences: 3902068
Number of extensions: 4229237
Number of successful extensions: 77241
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77175
Number of HSP's gapped (non-prelim): 65
length of query: 493
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 471
effective length of database: 17,147,199,772
effective search space: 8076331092612
effective search space used: 8076331092612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top