ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44g04 |
|---|---|
| Clone Library Name | barley_pub |
>CHIT1_TULBA (Q9SLP4) Chitinase 1 precursor (EC 3.2.1.14) (Tulip bulb| chitinase-1) (TBC-1) Length = 314 Score = 117 bits (294), Expect = 9e-27 Identities = 56/121 (46%), Positives = 79/121 (65%), Gaps = 2/121 (1%) Frame = -3 Query: 437 PYGNADVQRYYQTLWAAHGTAIDYVNFQFYAYGASTTAAQYVSLFDEQIANYPGANILAS 258 P+ +A VQ +YQ LW +G IDYVNFQFYAY A T+ Q++ F+EQ +NY G +L S Sbjct: 184 PFDDAQVQSHYQALWEKYGHQIDYVNFQFYAYSARTSVEQFLKYFEEQSSNYHGGKVLVS 243 Query: 257 FTTAATNTSVPVDTALSACRTLQEQGKLYGIFVWAADHS--RNQGFKYETQSQALLTDAT 84 F+T ++ P + AC L++QGKL+GIFVW+AD S N F+YE Q+Q++L Sbjct: 244 FSTDSSGGLKPDNGFFRACSILKKQGKLHGIFVWSADDSLMSNNVFRYEMQAQSMLASVN 303 Query: 83 A 81 + Sbjct: 304 S 304
>CHIT2_TULBA (Q7M443) Chitinase 2 (EC 3.2.1.14) (Tulip bulb chitinase-2) (TBC-2)| Length = 275 Score = 114 bits (284), Expect = 1e-25 Identities = 55/116 (47%), Positives = 75/116 (64%), Gaps = 2/116 (1%) Frame = -3 Query: 437 PYGNADVQRYYQTLWAAHGTAIDYVNFQFYAYGASTTAAQYVSLFDEQIANYPGANILAS 258 P+ +A VQ +YQ LW +G IDYVNFQFY Y + + Q++ F+ Q +NYPG +L S Sbjct: 158 PFDDAQVQSHYQALWEKYGHQIDYVNFQFYVYSSRMSVEQFLKYFEMQRSNYPGGKVLVS 217 Query: 257 FTTAATNTSVPVDTALSACRTLQEQGKLYGIFVWAADHS--RNQGFKYETQSQALL 96 F+T + P + AC L++QGKL+GIFVW+AD S N FKYE Q+Q+LL Sbjct: 218 FSTDNSGGLKPRNGFFDACSILKKQGKLHGIFVWSADDSLMSNDVFKYEMQAQSLL 273
>CHI1_RHIOL (P29026) Chitinase 1 precursor (EC 3.2.1.14)| Length = 540 Score = 35.0 bits (79), Expect = 0.081 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Frame = -3 Query: 386 HGTAIDYVNFQFYAYGASTTAAQY-VSLFDEQI-ANYPGANILASFT-----TAATNTSV 228 + + DYVN QFY S T + + +D P N+ FT TAA + V Sbjct: 208 NSASFDYVNVQFYNNYCSATGSSFNFDTWDNWAKTTSPNKNVKIMFTIPGSPTAAGSGYV 267 Query: 227 PVDTALSACRTLQEQGKLY-GIFVWAADHSRNQG 129 P+ T + +L + Y G+ VW A + N G Sbjct: 268 PMSTLQTIVPSLASEYSSYGGVSVWDASQAWNNG 301
>CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14)| Length = 542 Score = 34.7 bits (78), Expect = 0.11 Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Frame = -3 Query: 386 HGTAIDYVNFQFYAYGASTTAAQY-VSLFDEQI-ANYPGANILASFT-----TAATNTSV 228 + + DYVN QFY S T + + +D P N+ FT TAA + V Sbjct: 208 NSASFDYVNVQFYNNYCSATGSSFNFDTWDNWAKTTSPNKNVKIMFTVPGSSTAAGSGYV 267 Query: 227 PVDTALSACRTLQEQGKLY-GIFVWAADHSRNQG 129 P+ T + +L + Y G+ VW A + N G Sbjct: 268 PMSTLQTIVPSLASKYSSYGGVSVWDASQAWNNG 301
>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis pigmentosa| 1-like protein 1) Length = 1859 Score = 31.2 bits (69), Expect = 1.2 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 6/69 (8%) Frame = +3 Query: 78 VSGGISQQGLRLCLVLESLVPGMVCSPNKDAVELA------LLLQSPASTKRGVDRHRGI 239 VSG ++ L +L+S G S N++A+E+A +L Q T +G D +G+ Sbjct: 1552 VSGAPVRKAFDLQQILQSKKGG---SSNREAMEVAPQRTGRMLSQEDLGTVQGADEKQGL 1608 Query: 240 GRRRGEAGQ 266 G GE G+ Sbjct: 1609 GVAEGEEGE 1617
>COA1_POVBO (P24848) Coat protein VP1| Length = 365 Score = 30.4 bits (67), Expect = 2.0 Identities = 20/99 (20%), Positives = 42/99 (42%) Frame = -3 Query: 416 QRYYQTLWAAHGTAIDYVNFQFYAYGASTTAAQYVSLFDEQIANYPGANILASFTTAATN 237 +RY + I+ +N+ F+A G Q++ ++ A Y + +N Sbjct: 133 KRYSPSAGQGSAMPIEGINYHFFAVGGEPLEIQFIC--EDFKAPYHPTETIVPPKDKLSN 190 Query: 236 TSVPVDTALSACRTLQEQGKLYGIFVWAADHSRNQGFKY 120 S +D L + + ++ +Y + W D S+N+ +Y Sbjct: 191 KSQVLDPTL---KGILDKDGVYPVECWCPDPSKNENTRY 226
>SIMA_DROME (Q24167) Protein similar| Length = 1507 Score = 30.0 bits (66), Expect = 2.6 Identities = 14/42 (33%), Positives = 26/42 (61%) Frame = +2 Query: 41 NQFTQT*KLGLISKRWHQSTGPATVSRT*ILGSWNGLQPKQR 166 N + Q + L+ KR + S GP T++ + GS +GL+P+++ Sbjct: 524 NPYKQILQAELLIKRENHSPGPRTITAQLLSGSSSGLRPEEK 565
>AP180_RAT (Q05140) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) Length = 915 Score = 30.0 bits (66), Expect = 2.6 Identities = 19/46 (41%), Positives = 20/46 (43%) Frame = -3 Query: 338 ASTTAAQYVSLFDEQIANYPGANILASFTTAATNTSVPVDTALSAC 201 A T A V LF + A PG AS A T PV AL AC Sbjct: 425 AVTAATTEVDLFGDAFAASPGEAPAASEGATAPATPAPVAAALDAC 470
>AP180_HUMAN (O60641) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) Length = 907 Score = 29.3 bits (64), Expect = 4.4 Identities = 18/44 (40%), Positives = 19/44 (43%) Frame = -3 Query: 332 TTAAQYVSLFDEQIANYPGANILASFTTAATNTSVPVDTALSAC 201 T V LF + A PG AS AA T PV AL AC Sbjct: 431 TAVTAEVDLFGDAFAASPGEAPAASEGAAAPATPTPVAAALDAC 474
>CKAP5_HUMAN (Q14008) Cytoskeleton-associated protein 5 (Colonic and hepatic| tumor over-expressed protein) (Ch-TOG protein) Length = 2032 Score = 28.9 bits (63), Expect = 5.8 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +3 Query: 192 QSPASTKRGVDRHRGIGRRRGEAGQ--DVGSRVVGDLL 299 QSP + RG+ +H G GE G D GS V DLL Sbjct: 815 QSPPAPTRGISKHSTSGTDEGEDGDEPDDGSNDVVDLL 852
>GUAA_LEIXX (Q6AD51) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 503 Score = 28.9 bits (63), Expect = 5.8 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 16/71 (22%) Frame = +3 Query: 222 DRHRGIGRRRGEA----------GQDVGSRVVGDL------LVEEADVLRRGGASAVGVE 353 D R IGR G G +G R+VGD+ L+ +AD + R +A G++ Sbjct: 359 DEVRAIGRELGLPEVIVGRQPFPGPGLGIRIVGDVTRERLDLLRDADAIVRAELTAAGLD 418 Query: 354 LEVDIVYGCPV 386 E ++ CPV Sbjct: 419 SE---IWQCPV 426
>AP180_MOUSE (Q61548) Clathrin coat assembly protein AP180 (Clathrin| coat-associated protein AP180) (91 kDa synaptosomal-associated protein) (Phosphoprotein F1-20) Length = 901 Score = 28.5 bits (62), Expect = 7.6 Identities = 18/46 (39%), Positives = 19/46 (41%) Frame = -3 Query: 338 ASTTAAQYVSLFDEQIANYPGANILASFTTAATNTSVPVDTALSAC 201 A T V LF + A PG AS A T PV AL AC Sbjct: 425 AVTAVTTEVDLFGDAFAASPGEAPAASEGATAPATPAPVAAALDAC 470
>GUAA_MYCLE (P46810) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 529 Score = 28.1 bits (61), Expect = 9.9 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 6/64 (9%) Frame = +3 Query: 213 RGVDRHRGIGRRRGEAGQDVGSRVVGDLLVEEADVLRRGGASA------VGVELEVDIVY 374 R +D I R+ G +G R+VG++ E D LRR + A G++ + ++ Sbjct: 392 RQLDLPEEIVARQPFPGPGLGIRIVGEVTAERLDTLRRADSIAREELTTAGLDYQ---IW 448 Query: 375 GCPV 386 CPV Sbjct: 449 QCPV 452
>VL2_HPV2A (P25487) Minor capsid protein L2| Length = 524 Score = 28.1 bits (61), Expect = 9.9 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%) Frame = +3 Query: 156 PNKDAVELALLLQSPASTKRGVDRHRGIGRR---RGEAGQDVGSRV 284 P+ D +++ L + +++RG R +GRR R +G+ +G+RV Sbjct: 330 PDPDFLDIVALHRPALTSRRGTVRFSRLGRRATLRTRSGKQIGARV 375
>GRIP1_RAT (P97879) Glutamate receptor-interacting protein 1 (GRIP1 protein)| (AMPA receptor-interacting protein GRIP1) Length = 1112 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = +3 Query: 120 VLESLVPGM----VCSPNKDAVELALLLQSPASTKRGVDRHRGIGRRRGEAGQDVGSRVV 287 V ES++P V P K +VEL + + SP+S K G D ++G G+ + Sbjct: 560 VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPG-DPLVISDIKKGSVAHRTGTLEL 618 Query: 288 GDLLV 302 GD L+ Sbjct: 619 GDKLL 623
>DXR_NOCFA (Q5YS72) 1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC| 1.1.1.267) (DXP reductoisomerase) (1-deoxyxylulose-5-phosphate reductoisomerase) (2-C-methyl-D-erythritol 4-phosphate synthase) Length = 394 Score = 28.1 bits (61), Expect = 9.9 Identities = 18/50 (36%), Positives = 24/50 (48%) Frame = -3 Query: 281 PGANILASFTTAATNTSVPVDTALSACRTLQEQGKLYGIFVWAADHSRNQ 132 PGA F+TA+T T PVDT + L Q G V A ++ N+ Sbjct: 288 PGAAAACDFSTASTWTFEPVDTEVFPAVELARQAGQAGGSVTAVYNAANE 337
>GRIP1_MOUSE (Q925T6) Glutamate receptor-interacting protein 1 (GRIP1 protein)| Length = 1127 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%) Frame = +3 Query: 120 VLESLVPGM----VCSPNKDAVELALLLQSPASTKRGVDRHRGIGRRRGEAGQDVGSRVV 287 V ES++P V P K +VEL + + SP+S K G D ++G G+ + Sbjct: 560 VAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPG-DPLVISDIKKGSVAHRTGTLEL 618 Query: 288 GDLLV 302 GD L+ Sbjct: 619 GDKLL 623
>HTS_DROME (Q02645) Protein hu-li tai shao (Adducin-like protein)| Length = 1156 Score = 28.1 bits (61), Expect = 9.9 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +3 Query: 246 RRGEAGQDVGSRVVGDLLVEEADVLRRGGASAVGVELEVDIVYGCPVRR 392 RR +GS++ + L D R GGA A G+ ++ + G PV R Sbjct: 39 RRKRVEAIMGSKLFREELERIVDSARDGGAGASGILQQLSDIVGVPVSR 87
>COA1_POVHA (P03092) Coat protein VP1| Length = 372 Score = 28.1 bits (61), Expect = 9.9 Identities = 21/85 (24%), Positives = 33/85 (38%) Frame = -3 Query: 374 IDYVNFQFYAYGASTTAAQYVSLFDEQIANYPGANILASFTTAATNTSVPVDTALSACRT 195 ++ + +A G Q L ANY A + T TS +A Sbjct: 144 VEGTTYHMFAVGGEPLDLQ--GLVQNYNANYEAAIVSIKTVTGKAMTSTNQVLDPTAKAK 201 Query: 194 LQEQGKLYGIFVWAADHSRNQGFKY 120 L + G+ Y I +W D S+N+ +Y Sbjct: 202 LDKDGR-YPIEIWGPDPSKNENSRY 225 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,250,458 Number of Sequences: 219361 Number of extensions: 1175895 Number of successful extensions: 3441 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3382 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3441 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2570413340 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
