ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative... 212 7e-52
2gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III ... 212 7e-52
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 212 7e-52
4gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds 212 7e-52
5gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nb... 212 7e-52
6dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clon... 212 7e-52
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 212 7e-52
8dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
9ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative... 54 4e-04
10gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica culti... 54 4e-04
11gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III ch... 54 4e-04
12dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
13dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
14dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
15dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
16ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative... 48 0.024
17dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
18dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
19dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
20dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
21dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.024
22gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequ... 44 0.38
23gb|AY308825.1| Sus scrofa isolate LR2 prolactin receptor (PRLR) ... 42 1.5
24gb|AY308824.1| Sus scrofa isolate Minipig prolactin receptor (PR... 42 1.5
25gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, comple... 42 1.5
26gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complet... 42 1.5
27gb|U96306.1|SSU96306 Sus scrofa prolactin receptor (PRLR) gene, ... 42 1.5
28gb|AC159209.2| Mus musculus BAC clone RP23-100C6 from chromosome... 40 5.9
29gb|AC007035.3| Homo sapiens BAC clone RP11-104I19 from 7, comple... 40 5.9
30gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, comple... 40 5.9
31emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 o... 40 5.9
32emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
33emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.9
34emb|BX640421.1| Bordetella pertussis strain Tohama I, complete g... 40 5.9
35emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segmen... 40 5.9
36gb|CP000264.1| Jannaschia sp. CCS1, complete genome 40 5.9
37gb|AC134860.4| Mus musculus BAC clone RP23-388A16 from chromosom... 40 5.9
38gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q2... 40 5.9
39gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 5.9
40gb|AC167663.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.9
41gb|AC167560.3| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.9
42gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, comp... 40 5.9
43gb|AC167664.4| Culex pipiens quinquefasciatus, clone Culex pipie... 40 5.9 
>ref|NM_196494.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           RCB4 (OSJNBa0032I20.7), mRNA
          Length = 924

 Score =  212 bits (107), Expect = 7e-52
 Identities = 215/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 114 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
           |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 882 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 823

                                                                       
Query: 174 gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
            ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 822 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 763

                                                                       
Query: 234 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 762 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 703

                                                                       
Query: 294 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 702 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 643

                      
Query: 354 ctggaagttga 364
           |||||||||||
Sbjct: 642 ctggaagttga 632
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>gb|AF350426.1| Oryza sativa (japonica cultivar-group) class III chitinase RCB4
           (Rcb4) mRNA, complete cds
          Length = 1158

 Score =  212 bits (107), Expect = 7e-52
 Identities = 215/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 114 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
           |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 934 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 875

                                                                       
Query: 174 gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
            ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 874 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 815

                                                                       
Query: 234 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 814 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 755

                                                                       
Query: 294 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 754 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 695

                      
Query: 354 ctggaagttga 364
           |||||||||||
Sbjct: 694 ctggaagttga 684
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  212 bits (107), Expect = 7e-52
 Identities = 215/251 (85%)
 Strand = Plus / Minus

                                                                            
Query: 114      tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
                |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 14045725 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 14045666

                                                                            
Query: 174      gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
                 ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 14045665 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 14045606

                                                                            
Query: 234      ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
                |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 14045605 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 14045546

                                                                            
Query: 294      ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
                ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 14045545 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 14045486

                           
Query: 354      ctggaagttga 364
                |||||||||||
Sbjct: 14045485 ctggaagttga 14045475



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 337      gcgccgtaggcgtagaactggaagttgacatagtc 371
                ||||||||| ||||||||||||||||||| |||||
Sbjct: 14076530 gcgccgtagccgtagaactggaagttgacgtagtc 14076496



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 338      cgccgtaggcgtagaactggaagttgac 365
                |||||||| |||||||||||||||||||
Sbjct: 14088981 cgccgtagccgtagaactggaagttgac 14088954
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>gb|AF330230.1| Oryza sativa chitinase mRNA, partial cds
          Length = 941

 Score =  212 bits (107), Expect = 7e-52
 Identities = 215/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 114 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
           |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 807 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 748

                                                                       
Query: 174 gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
            ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 747 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 688

                                                                       
Query: 234 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 687 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 628

                                                                       
Query: 294 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 627 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 568

                      
Query: 354 ctggaagttga 364
           |||||||||||
Sbjct: 567 ctggaagttga 557
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>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence
          Length = 144651

 Score =  212 bits (107), Expect = 7e-52
 Identities = 215/251 (85%)
 Strand = Plus / Minus

                                                                         
Query: 114   tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
             |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 61854 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 61795

                                                                         
Query: 174   gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
              ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 61794 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 61735

                                                                         
Query: 234   ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
             |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 61734 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 61675

                                                                         
Query: 294   ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
             ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 61674 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 61615

                        
Query: 354   ctggaagttga 364
             |||||||||||
Sbjct: 61614 ctggaagttga 61604



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 337   gcgccgtaggcgtagaactggaagttgacatagtc 371
             ||||||||| ||||||||||||||||||| |||||
Sbjct: 92659 gcgccgtagccgtagaactggaagttgacgtagtc 92625



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 338    cgccgtaggcgtagaactggaagttgac 365
              |||||||| |||||||||||||||||||
Sbjct: 105110 cgccgtagccgtagaactggaagttgac 105083
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>dbj|AK071453.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093F02, full
           insert sequence
          Length = 1211

 Score =  212 bits (107), Expect = 7e-52
 Identities = 215/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 114 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
           |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 935 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 876

                                                                       
Query: 174 gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
            ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 875 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 816

                                                                       
Query: 234 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
           |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 815 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 756

                                                                       
Query: 294 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 755 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 696

                      
Query: 354 ctggaagttga 364
           |||||||||||
Sbjct: 695 ctggaagttga 685
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  212 bits (107), Expect = 7e-52
 Identities = 215/251 (85%)
 Strand = Plus / Minus

                                                                            
Query: 114      tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
                |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 14053967 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 14053908

                                                                            
Query: 174      gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
                 ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 14053907 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 14053848

                                                                            
Query: 234      ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
                |||  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 14053847 ggtcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 14053788

                                                                            
Query: 294      ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
                ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 14053787 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 14053728

                           
Query: 354      ctggaagttga 364
                |||||||||||
Sbjct: 14053727 ctggaagttga 14053717



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 337      gcgccgtaggcgtagaactggaagttgacatagtc 371
                ||||||||| ||||||||||||||||||| |||||
Sbjct: 14084772 gcgccgtagccgtagaactggaagttgacgtagtc 14084738



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                            
Query: 338      cgccgtaggcgtagaactggaagttgac 365
                |||||||| |||||||||||||||||||
Sbjct: 14097223 cgccgtagccgtagaactggaagttgac 14097196
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>dbj|AK061215.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E04, full
           insert sequence
          Length = 1096

 Score =  204 bits (103), Expect = 2e-49
 Identities = 214/251 (85%)
 Strand = Plus / Minus

                                                                       
Query: 114 tgtctcgtacttgaatccttggttcctggaatggtctgcagcccaaacaaagatgccgta 173
           |||||| |||||||| |||||| |||||||||| || |||||||| |  |||||||||||
Sbjct: 820 tgtctcatacttgaacccttggctcctggaatgatcagcagcccagatgaagatgccgta 761

                                                                       
Query: 174 gagcttgccctgctcctgcagagtccggcaagcactaagcgcggtgtcgaccggcaccga 233
            ||||| |||| || |||||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 760 cagcttcccctccttctgcagagtccggcaagcgctcagcgccgtctcgacgggcaccga 701

                                                                       
Query: 234 ggtattggtcgccgccgtggtgaagctggccaggatgttggctccagggtagttggcgat 293
           | |  | ||||||||||| |||||||| || ||||||||  |||| ||||||||| ||||
Sbjct: 700 gatcgtcgtcgccgccgtcgtgaagctcgcaaggatgttccctccggggtagttgacgat 641

                                                                       
Query: 294 ctgctcgtcgaagaggctgacgtactgcgccgcggtggtgctagcgccgtaggcgtagaa 353
           ||||| || ||||| |  ||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 640 ctgctggttgaagaagtcgacgtactgcgcctccgtcgtgctggcgccgtaggcgtagaa 581

                      
Query: 354 ctggaagttga 364
           |||||||||||
Sbjct: 580 ctggaagttga 570
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>ref|NM_196498.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           (OSJNBa0032I20.10), mRNA
          Length = 861

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 337 gcgccgtaggcgtagaactggaagttgacatagtc 371
           ||||||||| ||||||||||||||||||| |||||
Sbjct: 602 gcgccgtagccgtagaactggaagttgacgtagtc 568
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>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare Clone OSJNBa0061K21 From Chromosome 10,
             complete sequence
          Length = 112721

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 337   gcgccgtaggcgtagaactggaagttgacatagtc 371
             ||||||||| ||||||||||||||||||| |||||
Sbjct: 16168 gcgccgtagccgtagaactggaagttgacgtagtc 16134



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 338   cgccgtaggcgtagaactggaagttgac 365
             |||||||| |||||||||||||||||||
Sbjct: 28619 cgccgtagccgtagaactggaagttgac 28592
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>gb|AF296279.1|AF296279 Oryza sativa subsp. japonica class III chitinase (chib1) gene,
           complete cds
          Length = 1038

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 337 gcgccgtaggcgtagaactggaagttgacatagtc 371
           ||||||||| ||||||||||||||||||| |||||
Sbjct: 653 gcgccgtagccgtagaactggaagttgacgtagtc 619
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>dbj|AK104397.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-C10, full
           insert sequence
          Length = 989

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 337 gcgccgtaggcgtagaactggaagttgacatagtc 371
           ||||||||| ||||||||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>dbj|AK104202.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-C04, full
           insert sequence
          Length = 1053

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 337 gcgccgtaggcgtagaactggaagttgacatagtc 371
           ||||||||| ||||||||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>dbj|AK104100.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G07, full
           insert sequence
          Length = 1026

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 337 gcgccgtaggcgtagaactggaagttgacatagtc 371
           ||||||||| ||||||||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>dbj|AK059767.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-G07, full
           insert sequence
          Length = 1069

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 337 gcgccgtaggcgtagaactggaagttgacatagtc 371
           ||||||||| ||||||||||||||||||| |||||
Sbjct: 658 gcgccgtagccgtagaactggaagttgacgtagtc 624
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>ref|NM_196501.1| Oryza sativa (japonica cultivar-group) putative class III chitinase
           (OSJNBa0032I20.12), mRNA
          Length = 867

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgccgtaggcgtagaactggaagttgac 365
           |||||||| |||||||||||||||||||
Sbjct: 607 cgccgtagccgtagaactggaagttgac 580
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>dbj|AK119555.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E12, full
           insert sequence
          Length = 1089

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgccgtaggcgtagaactggaagttgac 365
           |||||||| |||||||||||||||||||
Sbjct: 631 cgccgtagccgtagaactggaagttgac 604
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>dbj|AK104292.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F06, full
           insert sequence
          Length = 1108

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgccgtaggcgtagaactggaagttgac 365
           |||||||| |||||||||||||||||||
Sbjct: 626 cgccgtagccgtagaactggaagttgac 599
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>dbj|AK104222.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-E05, full
           insert sequence
          Length = 1069

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgccgtaggcgtagaactggaagttgac 365
           |||||||| |||||||||||||||||||
Sbjct: 631 cgccgtagccgtagaactggaagttgac 604
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>dbj|AK099101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I19, full
           insert sequence
          Length = 1068

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgccgtaggcgtagaactggaagttgac 365
           |||||||| |||||||||||||||||||
Sbjct: 630 cgccgtagccgtagaactggaagttgac 603
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>dbj|AK060033.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H08, full
           insert sequence
          Length = 1134

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 338 cgccgtaggcgtagaactggaagttgac 365
           |||||||| |||||||||||||||||||
Sbjct: 631 cgccgtagccgtagaactggaagttgac 604
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>gb|AC090889.3| Canis familiaris clone RP81-156O18, complete sequence
          Length = 146276

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 19     attccatatgatttcactcata 40
              ||||||||||||||||||||||
Sbjct: 122897 attccatatgatttcactcata 122918
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>gb|AY308825.1| Sus scrofa isolate LR2 prolactin receptor (PRLR) mRNA, complete cds
          Length = 1878

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gccgtggtgaagctggccagg 267
            |||||||||||||||||||||
Sbjct: 1802 gccgtggtgaagctggccagg 1782
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>gb|AY308824.1| Sus scrofa isolate Minipig prolactin receptor (PRLR) mRNA, complete
            cds
          Length = 1878

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 247  gccgtggtgaagctggccagg 267
            |||||||||||||||||||||
Sbjct: 1802 gccgtggtgaagctggccagg 1782
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>gb|AC122424.4| Mus musculus BAC clone RP24-173E19 from 8, complete sequence
          Length = 175181

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 145   tggtctgcagcccaaacaaag 165
             |||||||||||||||||||||
Sbjct: 63815 tggtctgcagcccaaacaaag 63835
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>gb|AC142262.3| Mus musculus BAC clone RP24-486I4 from 8, complete sequence
          Length = 204183

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  tggtctgcagcccaaacaaag 165
            |||||||||||||||||||||
Sbjct: 3142 tggtctgcagcccaaacaaag 3122
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>gb|U96306.1|SSU96306 Sus scrofa prolactin receptor (PRLR) gene, partial cds
          Length = 449

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 247 gccgtggtgaagctggccagg 267
           |||||||||||||||||||||
Sbjct: 214 gccgtggtgaagctggccagg 194
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>gb|AC159209.2| Mus musculus BAC clone RP23-100C6 from chromosome 13, complete sequence
          Length = 212761

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 152   cagcccaaacaaagatgccgtagagctt 179
             ||||||||||||||||||| ||||||||
Sbjct: 33416 cagcccaaacaaagatgcc-tagagctt 33442
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>gb|AC007035.3| Homo sapiens BAC clone RP11-104I19 from 7, complete sequence
          Length = 180397

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 45     aatttactcaaacctagaaactgg 68
              ||||||| ||||||||||||||||
Sbjct: 153371 aatttacacaaacctagaaactgg 153394
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>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence
          Length = 205885

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     aatttactcaaacctagaaactgg 68
              ||||||| ||||||||||||||||
Sbjct: 205401 aatttacacaaacctagaaactgg 205378
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>emb|AL031054.1|HS48G12 Human DNA sequence from clone RP1-48G12 on chromosome Xq27.1-27.3
             Contains a CpG island, complete sequence
          Length = 199016

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    ataaatcaatttactcaaacctag 61
             ||||||||||||||||||| ||||
Sbjct: 49631 ataaatcaatttactcaaatctag 49608
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>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16
          Length = 349442

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 247    gccgtggtgaagctggccag 266
              ||||||||||||||||||||
Sbjct: 247443 gccgtggtgaagctggccag 247462
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>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16
          Length = 346274

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    gccgtggtgaagctggccag 266
              ||||||||||||||||||||
Sbjct: 281491 gccgtggtgaagctggccag 281472
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>emb|BX640421.1| Bordetella pertussis strain Tohama I, complete genome; segment 11/12
          Length = 349726

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   gccgtggtgaagctggccag 266
             ||||||||||||||||||||
Sbjct: 99234 gccgtggtgaagctggccag 99253
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>emb|BX569694.1| Synechococcus sp. WH8102 complete genome; segment 6/7
          Length = 349122

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 238   ttggtcgccgccgtggtgaa 257
             ||||||||||||||||||||
Sbjct: 55465 ttggtcgccgccgtggtgaa 55484
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>gb|CP000264.1| Jannaschia sp. CCS1, complete genome
          Length = 4317977

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 289     gcgatctgctcgtcgaagag 308
               ||||||||||||||||||||
Sbjct: 3444739 gcgatctgctcgtcgaagag 3444720
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>gb|AC134860.4| Mus musculus BAC clone RP23-388A16 from chromosome 13, complete sequence
          Length = 206634

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                          
Query: 152    cagcccaaacaaagatgccgtagagctt 179
              ||||||||||||||||||| ||||||||
Sbjct: 202793 cagcccaaacaaagatgcc-tagagctt 202819
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>gb|AF279874.3| Homo sapiens chromosome 8 clone CTD-2351C9 map q21-q23, complete
             sequence
          Length = 109808

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    atgatttcactcataaatca 45
             ||||||||||||||||||||
Sbjct: 16336 atgatttcactcataaatca 16317
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     gagcttgccctgctcctgca 193
               ||||||||||||||||||||
Sbjct: 1970105 gagcttgccctgctcctgca 1970124
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>gb|AC167663.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940143D9, complete sequence
          Length = 118759

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 287  tggcgatctgctcgtcgaag 306
            ||||||||||||||||||||
Sbjct: 5058 tggcgatctgctcgtcgaag 5077
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>gb|AC167560.3| Culex pipiens quinquefasciatus, clone Culex pipiens
            quinquefasciatus-3940139D9, complete sequence
          Length = 118752

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 287  tggcgatctgctcgtcgaag 306
            ||||||||||||||||||||
Sbjct: 5058 tggcgatctgctcgtcgaag 5077
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>gb|AC103359.6| Mus musculus chromosome 8, clone RP24-365B9, complete sequence
          Length = 178620

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    cttgaatccttggttcctgg 142
              ||||||||||||||||||||
Sbjct: 115713 cttgaatccttggttcctgg 115732
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>gb|AC167664.4| Culex pipiens quinquefasciatus, clone Culex pipiens
              quinquefasciatus-3940124D9, complete sequence
          Length = 118889

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 287    tggcgatctgctcgtcgaag 306
              ||||||||||||||||||||
Sbjct: 113701 tggcgatctgctcgtcgaag 113682


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,019,763
Number of Sequences: 3902068
Number of extensions: 3019763
Number of successful extensions: 61870
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 61657
Number of HSP's gapped (non-prelim): 215
length of query: 439
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 417
effective length of database: 17,147,199,772
effective search space: 7150382304924
effective search space used: 7150382304924
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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