ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart44f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_460995.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 2.4
2emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chro... 40 2.4
3emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 2.4
4gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete... 40 2.4
5ref|XM_507934.1| PREDICTED: Pan troglodytes similar to chromosom... 38 9.6
6gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome... 38 9.6
7gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, com... 38 9.6
8gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 38 9.6
9ref|XM_587564.2| PREDICTED: Bos taurus similar to nucleolar comp... 38 9.6
10gb|AY197337.1| Bos taurus homeobox C4 protein gene, partial cds 38 9.6
11ref|NG_005542.1| Homo sapiens homeobox C4/C5/C6 cluster (HOXC4/C... 38 9.6
12gb|AC148311.2| Pan troglodytes BAC clone RP43-29P9 from 7, compl... 38 9.6
13gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, com... 38 9.6
14ref|NM_022451.9| Homo sapiens nucleolar complex associated 3 hom... 38 9.6
15gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, com... 38 9.6
16gb|AC161758.3| Mus musculus BAC clone RP23-455F6 from chromosome... 38 9.6
17ref|XM_534972.2| PREDICTED: Canis familiaris similar to CG1234-P... 38 9.6
18gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, comp... 38 9.6
19gb|AC145988.3| Pan troglodytes BAC clone RP43-166E1 from 7, comp... 38 9.6
20gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosom... 38 9.6
21gb|AC125053.4| Mus musculus BAC clone RP23-389L19 from chromosom... 38 9.6
22gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, c... 38 9.6
23gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complet... 38 9.6
24gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosom... 38 9.6
25gb|AF521006.1| Homo sapiens corin gene, exon 1 and partial cds 38 9.6
26gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, comple... 38 9.6
27gb|AC073137.7| Homo sapiens BAC clone RP11-703P11 from 7, comple... 38 9.6
28gb|BC049850.1| Homo sapiens nucleolar complex associated 3 homol... 38 9.6
29emb|AL390878.6| Human DNA sequence from clone RP11-442F12 on chr... 38 9.6
30emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on ch... 38 9.6
31emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on ... 38 9.6
32gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, comp... 38 9.6
33emb|CR858382.1| Pongo pygmaeus mRNA; cDNA DKFZp459M1032 (from cl... 38 9.6
34gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome... 38 9.6
35emb|AL031307.1|SPCC663 S.pombe chromosome III cosmid c663 38 9.6
36emb|AL731818.6| Mouse DNA sequence from clone RP23-401L13 on chr... 38 9.6
37gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosom... 38 9.6
38emb|CR859543.1| Pongo pygmaeus mRNA; cDNA DKFZp459L1124 (from cl... 38 9.6
39dbj|AK125335.1| Homo sapiens cDNA FLJ43345 fis, clone NT2RI3008228 38 9.6
40dbj|AK091246.1| Homo sapiens cDNA FLJ33927 fis, clone CTONG2017429 38 9.6
41dbj|AK022882.1| Homo sapiens cDNA FLJ12820 fis, clone NT2RP2002736 38 9.6
42gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete se... 38 9.6
43gb|AC017063.8| Homo sapiens BAC clone RP11-354H17 from 4, comple... 38 9.6
44gb|S62287.1| Hox 3 gene cluster: Hox3.5=homeobox [mice, BALB/c, ... 38 9.6
45emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in ... 38 9.6
46gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Can... 38 9.6
47emb|BX510304.12| Mouse DNA sequence from clone RP23-128I6 on chr... 38 9.6
48dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
49dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
50dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
51gb|AC107068.3| Homo sapiens BAC clone RP11-121C2 from 4, complet... 38 9.6
52gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complet... 38 9.6
53gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster 38 9.6
54gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Ca... 38 9.6
55gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequ... 38 9.6
56gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Canc... 38 9.6
57ref|XM_574664.1| PREDICTED: Rattus norvegicus similar to AD24 (L... 38 9.6
58gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, comple... 38 9.6
59gb|AC135608.7| Mus musculus strain C57BL/6J clone rp23-408d14, c... 38 9.6
60dbj|AB077992.1| Homo sapiens mRNA for AD24, complete cds 38 9.6
61emb|AL807396.9| Mouse DNA sequence from clone RP23-105P9 on chro... 38 9.6
62dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
63dbj|AB002334.1| Homo sapiens mRNA for KIAA0336 gene, partial cds 38 9.6
64dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
65dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic D... 38 9.6
66dbj|AK026953.1| Homo sapiens cDNA: FLJ23300 fis, clone HEP10984 38 9.6
67gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complet... 38 9.6
68gb|AC144691.3| Didelphis virginiana clone LB3-241H11, complete s... 38 9.6
69gb|AC129066.3| Didelphis virginiana clone LB3-8N21, complete seq... 38 9.6
70emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in l... 38 9.6
71gb|AC115012.9| Mus musculus chromosome 3, clone RP24-192J5, comp... 38 9.6
72emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in... 38 9.6
73gb|AC115822.9| Mus musculus chromosome 18, clone RP23-406D17, co... 38 9.6
74ref|NM_181453.2| Homo sapiens GRIP and coiled-coil domain contai... 38 9.6
75ref|NM_014635.3| Homo sapiens GRIP and coiled-coil domain contai... 38 9.6
76gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.6
77emb|AL845278.19| Mouse DNA sequence from clone RP23-37H22 on chr... 38 9.6
78gb|AC122444.4| Mus musculus BAC clone RP24-232I9 from 9, complet... 38 9.6
79gb|AC139185.5| Mus musculus BAC clone RP24-91B1 from 6, complete... 38 9.6
80gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold 38 9.6
81gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 38 9.6
82gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome... 38 9.6
83gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, com... 38 9.6
84emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on ch... 38 9.6
85emb|AL592422.11| Mouse DNA sequence from clone RP23-218O16 on ch... 38 9.6
86gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, comp... 38 9.6
87dbj|D11328.1|MUSHOX35A Mouse Hox 3.5 gene, complete cds 38 9.6
88emb|AL732603.3| Mouse DNA sequence from clone RP23-154H8 on chro... 38 9.6
89emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chro... 38 9.6 
>ref|XM_460995.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F15829g)
            partial mRNA
          Length = 1947

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  ctctggaaaatgaaaggcac 166
            ||||||||||||||||||||
Sbjct: 1781 ctctggaaaatgaaaggcac 1762
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>emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chromosome X, complete
             sequence
          Length = 112366

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    ctgcatactatctttttcca 72
             ||||||||||||||||||||
Sbjct: 90051 ctgcatactatctttttcca 90032
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>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
               hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 147     ctctggaaaatgaaaggcac 166
               ||||||||||||||||||||
Sbjct: 1253636 ctctggaaaatgaaaggcac 1253655
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>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence
          Length = 150214

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 31    tagaatatgaaaagcagtctaact 54
             |||||||||| |||||||||||||
Sbjct: 57275 tagaatatgataagcagtctaact 57298
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>ref|XM_507934.1| PREDICTED: Pan troglodytes similar to chromosome 10 open reading
            frame 117; AD24 protein (LOC450621), mRNA
          Length = 2763

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1110 agaatatgaaaagcagtct 1092
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>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0073K23 map near R10571S, complete sequence
          Length = 161073

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 97    aagatgacaagacatcaca 115
             |||||||||||||||||||
Sbjct: 19443 aagatgacaagacatcaca 19425
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>gb|AC162693.5| Mus musculus chromosome 15, clone RP24-89G21, complete sequence
          Length = 159813

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 171    ttatttatgcgcccttaga 189
              |||||||||||||||||||
Sbjct: 158386 ttatttatgcgcccttaga 158404
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 57     atactatctttttccaaaa 75
              |||||||||||||||||||
Sbjct: 894919 atactatctttttccaaaa 894901
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>ref|XM_587564.2| PREDICTED: Bos taurus similar to nucleolar complex associated 3
            homolog (LOC510425), mRNA
          Length = 3665

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1694 agaatatgaaaagcagtct 1676
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>gb|AY197337.1| Bos taurus homeobox C4 protein gene, partial cds
          Length = 639

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 171 ttatttatgcgcccttaga 189
           |||||||||||||||||||
Sbjct: 306 ttatttatgcgcccttaga 288
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>ref|NG_005542.1| Homo sapiens homeobox C4/C5/C6 cluster (HOXC4/C5/C6@) on chromosome 12
          Length = 40195

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 171   ttatttatgcgcccttaga 189
             |||||||||||||||||||
Sbjct: 38298 ttatttatgcgcccttaga 38280
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>gb|AC148311.2| Pan troglodytes BAC clone RP43-29P9 from 7, complete sequence
          Length = 161683

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 61    tatctttttccaaaagaaa 79
             |||||||||||||||||||
Sbjct: 59311 tatctttttccaaaagaaa 59329
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>gb|AC163269.3| Mus musculus chromosome 15, clone RP24-276M6, complete sequence
          Length = 172683

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 167822 atagaatatgaaaagcagt 167840
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>ref|NM_022451.9| Homo sapiens nucleolar complex associated 3 homolog (S. cerevisiae)
            (NOC3L), mRNA
          Length = 3475

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1785 agaatatgaaaagcagtct 1767
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>gb|AC113028.15| Mus musculus chromosome 5, clone RP23-205D3, complete sequence
          Length = 275646

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 65     tttttccaaaagaaagttt 83
              |||||||||||||||||||
Sbjct: 144669 tttttccaaaagaaagttt 144687
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>gb|AC161758.3| Mus musculus BAC clone RP23-455F6 from chromosome 14, complete sequence
          Length = 171133

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 13393 atagaatatgaaaagcagt 13411
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>ref|XM_534972.2| PREDICTED: Canis familiaris similar to CG1234-PA (LOC477778), mRNA
          Length = 3213

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 2402 agaatatgaaaagcagtct 2384
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>gb|AC146511.3| Pan troglodytes BAC clone RP43-72N15 from 7, complete sequence
          Length = 192395

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     tatctttttccaaaagaaa 79
              |||||||||||||||||||
Sbjct: 119102 tatctttttccaaaagaaa 119084
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>gb|AC145988.3| Pan troglodytes BAC clone RP43-166E1 from 7, complete sequence
          Length = 162223

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 105    aagacatcacagccttgct 123
              |||||||||||||||||||
Sbjct: 143047 aagacatcacagccttgct 143065
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>gb|AC128672.4| Mus musculus BAC clone RP23-136O15 from chromosome 18, complete sequence
          Length = 215137

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 208002 atagaatatgaaaagcagt 207984
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>gb|AC125053.4| Mus musculus BAC clone RP23-389L19 from chromosome 18, complete sequence
          Length = 189741

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 142067 atagaatatgaaaagcagt 142085
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>gb|AC123695.10| Mus musculus chromosome 15, clone RP23-328C23, complete sequence
          Length = 217334

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 15158 atagaatatgaaaagcagt 15176
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>gb|AC124185.3| Mus musculus BAC clone RP23-230F5 from 1, complete sequence
          Length = 195372

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 149469 atagaatatgaaaagcagt 149451
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>gb|AC125094.5| Mus musculus BAC clone RP24-176L12 from chromosome 16, complete
             sequence
          Length = 170842

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 43855 atagaatatgaaaagcagt 43873
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>gb|AF521006.1| Homo sapiens corin gene, exon 1 and partial cds
          Length = 4165

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 19  gcacatagtacatagaata 37
           |||||||||||||||||||
Sbjct: 730 gcacatagtacatagaata 748
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>gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, complete sequence
          Length = 168415

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 30   atagaatatgaaaagcagt 48
            |||||||||||||||||||
Sbjct: 9495 atagaatatgaaaagcagt 9477
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>gb|AC073137.7| Homo sapiens BAC clone RP11-703P11 from 7, complete sequence
          Length = 168637

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 105   aagacatcacagccttgct 123
             |||||||||||||||||||
Sbjct: 40388 aagacatcacagccttgct 40370
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>gb|BC049850.1| Homo sapiens nucleolar complex associated 3 homolog (S. cerevisiae),
            mRNA (cDNA clone MGC:52005 IMAGE:5549517), complete cds
          Length = 3475

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1785 agaatatgaaaagcagtct 1767
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>emb|AL390878.6| Human DNA sequence from clone RP11-442F12 on chromosome 13 Contains part
              of the DIAPH3 gene for diaphanous homolog 3 (Drosophila)
              and a novel gene, complete sequence
          Length = 209794

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 62     atctttttccaaaagaaag 80
              |||||||||||||||||||
Sbjct: 168246 atctttttccaaaagaaag 168264
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>emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on chromosome 10 Contains the
             3'end of the PLCE1 gene for phospholipase C, epsilon 1
             (PLCE, KIAA1516), the gene for AD24 protein (FLJ12820),
             the 5'end  of a novel gene (KIAA0608) and a CpG island,
             complete sequence
          Length = 153449

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    agaatatgaaaagcagtct 50
             |||||||||||||||||||
Sbjct: 12763 agaatatgaaaagcagtct 12781
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>emb|AL035469.7|HS46B1 Human DNA sequence from clone RP1-46B1 on chromosome 6q12, complete
              sequence
          Length = 158204

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     acatagaatatgaaaagca 46
              |||||||||||||||||||
Sbjct: 149180 acatagaatatgaaaagca 149162
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>gb|AC083903.10| Homo sapiens BAC clone RP11-785G23 from UL, complete sequence
          Length = 174480

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    tagaatatgaaaagcagtc 49
             |||||||||||||||||||
Sbjct: 41288 tagaatatgaaaagcagtc 41306
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>emb|CR858382.1| Pongo pygmaeus mRNA; cDNA DKFZp459M1032 (from clone DKFZp459M1032)
          Length = 4342

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tagaatatgaaaagcagtc 49
            |||||||||||||||||||
Sbjct: 2974 tagaatatgaaaagcagtc 2992
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>gb|AC161816.5| Mus musculus BAC clone RP23-308L3 from chromosome 16, complete sequence
          Length = 213324

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 87449 atagaatatgaaaagcagt 87431
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>emb|AL031307.1|SPCC663 S.pombe chromosome III cosmid c663
          Length = 35369

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 65   tttttccaaaagaaagttt 83
            |||||||||||||||||||
Sbjct: 2236 tttttccaaaagaaagttt 2218
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>emb|AL731818.6| Mouse DNA sequence from clone RP23-401L13 on chromosome 11 Contains two
             novel genes, the AI503894 gene for expressed sequence
             AI503894, a laminin receptor 1 (ribosomal protein
             SA)(Lamr1) pseudogene and a CpG island, complete sequence
          Length = 201664

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 90438 atagaatatgaaaagcagt 90456
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>gb|AC154642.2| Mus musculus BAC clone RP23-277C14 from chromosome 14, complete sequence
          Length = 211315

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 144917 atagaatatgaaaagcagt 144935
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>emb|CR859543.1| Pongo pygmaeus mRNA; cDNA DKFZp459L1124 (from clone DKFZp459L1124)
          Length = 3519

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1847 agaatatgaaaagcagtct 1829
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>dbj|AK125335.1| Homo sapiens cDNA FLJ43345 fis, clone NT2RI3008228
          Length = 4215

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 19   gcacatagtacatagaata 37
            |||||||||||||||||||
Sbjct: 3082 gcacatagtacatagaata 3100
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>dbj|AK091246.1| Homo sapiens cDNA FLJ33927 fis, clone CTONG2017429
          Length = 2990

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1792 agaatatgaaaagcagtct 1774
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>dbj|AK022882.1| Homo sapiens cDNA FLJ12820 fis, clone NT2RP2002736
          Length = 2401

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 32  agaatatgaaaagcagtct 50
           |||||||||||||||||||
Sbjct: 746 agaatatgaaaagcagtct 728
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>gb|AC116663.1| Rattus norvegicus, clone RP31-109I17, complete sequence
          Length = 165658

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 171    ttatttatgcgcccttaga 189
              |||||||||||||||||||
Sbjct: 159493 ttatttatgcgcccttaga 159475
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>gb|AC017063.8| Homo sapiens BAC clone RP11-354H17 from 4, complete sequence
          Length = 193092

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 153   aaaatgaaaggcactcctt 171
             |||||||||||||||||||
Sbjct: 65378 aaaatgaaaggcactcctt 65360
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>gb|S62287.1| Hox 3 gene cluster: Hox3.5=homeobox [mice, BALB/c, liver, Genomic,
            3433 nt]
          Length = 3433

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 171  ttatttatgcgcccttaga 189
            |||||||||||||||||||
Sbjct: 1536 ttatttatgcgcccttaga 1518
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>emb|BX537152.15| Zebrafish DNA sequence from clone DKEY-61N7 in linkage group 14, complete
              sequence
          Length = 243729

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 123    taatttatgatctgcaaga 141
              |||||||||||||||||||
Sbjct: 163307 taatttatgatctgcaaga 163289
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>gb|AC160402.8| Mus musculus 10 BAC RP23-115L17 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 224566

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aggatactgcacatagtac 29
             |||||||||||||||||||
Sbjct: 16238 aggatactgcacatagtac 16256
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>emb|BX510304.12| Mouse DNA sequence from clone RP23-128I6 on chromosome 2, complete
             sequence
          Length = 160779

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 88190 atagaatatgaaaagcagt 88172
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 97      aagatgacaagacatcaca 115
               |||||||||||||||||||
Sbjct: 3394851 aagatgacaagacatcaca 3394869
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 57       atactatctttttccaaaagaaa 79
                ||||||||||||| |||||||||
Sbjct: 19989016 atactatcttttttcaaaagaaa 19989038



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 57       atactatctttttccaaaagaaa 79
                ||||||||||||| |||||||||
Sbjct: 15685180 atactatcttttttcaaaagaaa 15685202
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 15       tactgcacatagtacatag 33
                |||||||||||||||||||
Sbjct: 31479188 tactgcacatagtacatag 31479170
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>gb|AC107068.3| Homo sapiens BAC clone RP11-121C2 from 4, complete sequence
          Length = 181804

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 19    gcacatagtacatagaata 37
             |||||||||||||||||||
Sbjct: 40052 gcacatagtacatagaata 40034
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>gb|AC021667.21|AC021667 Mus musculus, clone RP23-304J12, complete sequence
          Length = 203106

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 171    ttatttatgcgcccttaga 189
              |||||||||||||||||||
Sbjct: 138249 ttatttatgcgcccttaga 138231
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>gb|AF490843.1| Homo sapiens clone PAC 70L19, HOXC gene cluster
          Length = 152740

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 171    ttatttatgcgcccttaga 189
              |||||||||||||||||||
Sbjct: 133185 ttatttatgcgcccttaga 133167
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>gb|AC023794.37| Homo sapiens 12 BAC RP11-834C11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 198488

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 171   ttatttatgcgcccttaga 189
             |||||||||||||||||||
Sbjct: 22303 ttatttatgcgcccttaga 22285
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>gb|AC117539.6| Papio hamadryas, clone RP41-208E11, complete sequence
          Length = 208592

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 171    ttatttatgcgcccttaga 189
              |||||||||||||||||||
Sbjct: 202185 ttatttatgcgcccttaga 202167
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>gb|AC092915.7| Homo sapiens 3 BAC RP11-585F20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 187215

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 105  aagacatcacagccttgct 123
            |||||||||||||||||||
Sbjct: 7176 aagacatcacagccttgct 7158
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>ref|XM_574664.1| PREDICTED: Rattus norvegicus similar to AD24 (LOC361753), mRNA
          Length = 2397

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1657 agaatatgaaaagcagtct 1639
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>gb|AC012487.12| Homo sapiens BAC clone RP11-85M14 from 2, complete sequence
          Length = 156602

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 31    tagaatatgaaaagcagtc 49
             |||||||||||||||||||
Sbjct: 21077 tagaatatgaaaagcagtc 21095
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>gb|AC135608.7| Mus musculus strain C57BL/6J clone rp23-408d14, complete sequence
          Length = 213801

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    aggatactgcacatagtac 29
             |||||||||||||||||||
Sbjct: 82872 aggatactgcacatagtac 82890
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>dbj|AB077992.1| Homo sapiens mRNA for AD24, complete cds
          Length = 2450

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   agaatatgaaaagcagtct 50
            |||||||||||||||||||
Sbjct: 1722 agaatatgaaaagcagtct 1704
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>emb|AL807396.9| Mouse DNA sequence from clone RP23-105P9 on chromosome X, complete
             sequence
          Length = 127065

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 62    atctttttccaaaagaaag 80
             |||||||||||||||||||
Sbjct: 33801 atctttttccaaaagaaag 33819
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>dbj|AP005848.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0078N11
          Length = 155168

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 15     tactgcacatagtacatag 33
              |||||||||||||||||||
Sbjct: 114585 tactgcacatagtacatag 114567
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>dbj|AB002334.1| Homo sapiens mRNA for KIAA0336 gene, partial cds
          Length = 6773

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tagaatatgaaaagcagtc 49
            |||||||||||||||||||
Sbjct: 3021 tagaatatgaaaagcagtc 3039
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>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0410E11
          Length = 150200

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 57     atactatctttttccaaaagaaa 79
              ||||||||||||| |||||||||
Sbjct: 119335 atactatcttttttcaaaagaaa 119357
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>dbj|AP005521.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0477F03
          Length = 176120

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 57    atactatctttttccaaaagaaa 79
             ||||||||||||| |||||||||
Sbjct: 60867 atactatcttttttcaaaagaaa 60889
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>dbj|AK026953.1| Homo sapiens cDNA: FLJ23300 fis, clone HEP10984
          Length = 2111

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 32  agaatatgaaaagcagtct 50
           |||||||||||||||||||
Sbjct: 446 agaatatgaaaagcagtct 428
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>gb|AC147869.3| Monodelphis domestica clone VMRC6-113K21, complete sequence
          Length = 157763

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    ttccaaaagaaagtttgca 86
             |||||||||||||||||||
Sbjct: 86984 ttccaaaagaaagtttgca 87002
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>gb|AC144691.3| Didelphis virginiana clone LB3-241H11, complete sequence
          Length = 158347

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 68     ttccaaaagaaagtttgca 86
              |||||||||||||||||||
Sbjct: 157738 ttccaaaagaaagtttgca 157756
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>gb|AC129066.3| Didelphis virginiana clone LB3-8N21, complete sequence
          Length = 158526

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 68    ttccaaaagaaagtttgca 86
             |||||||||||||||||||
Sbjct: 19011 ttccaaaagaaagtttgca 19029
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>emb|BX897665.7| Zebrafish DNA sequence from clone DKEY-27K7 in linkage group 4,
             complete sequence
          Length = 129995

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 25    agtacatagaatatgaaaa 43
             |||||||||||||||||||
Sbjct: 14783 agtacatagaatatgaaaa 14765
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>gb|AC115012.9| Mus musculus chromosome 3, clone RP24-192J5, complete sequence
          Length = 150447

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 116101 atagaatatgaaaagcagt 116119
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>emb|AL928691.7| Zebrafish DNA sequence from clone CH211-51H20 in linkage group 14,
              complete sequence
          Length = 167320

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 123    taatttatgatctgcaaga 141
              |||||||||||||||||||
Sbjct: 156834 taatttatgatctgcaaga 156852
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>gb|AC115822.9| Mus musculus chromosome 18, clone RP23-406D17, complete sequence
          Length = 160731

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 125   atttatgatctgcaagact 143
             |||||||||||||||||||
Sbjct: 73738 atttatgatctgcaagact 73756
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>ref|NM_181453.2| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2),
            transcript variant 1, mRNA
          Length = 6918

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tagaatatgaaaagcagtc 49
            |||||||||||||||||||
Sbjct: 3166 tagaatatgaaaagcagtc 3184
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>ref|NM_014635.3| Homo sapiens GRIP and coiled-coil domain containing 2 (GCC2),
            transcript variant 2, mRNA
          Length = 6833

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 31   tagaatatgaaaagcagtc 49
            |||||||||||||||||||
Sbjct: 3081 tagaatatgaaaagcagtc 3099
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 97      aagatgacaagacatcaca 115
               |||||||||||||||||||
Sbjct: 3403556 aagatgacaagacatcaca 3403574
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>emb|AL845278.19| Mouse DNA sequence from clone RP23-37H22 on chromosome 2, complete
             sequence
          Length = 123883

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 40327 atagaatatgaaaagcagt 40309
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>gb|AC122444.4| Mus musculus BAC clone RP24-232I9 from 9, complete sequence
          Length = 184253

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 131476 atagaatatgaaaagcagt 131458
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>gb|AC139185.5| Mus musculus BAC clone RP24-91B1 from 6, complete sequence
          Length = 191289

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 75234 atagaatatgaaaagcagt 75252
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>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold
          Length = 1751794

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 68      ttccaaaagaaagtttgca 86
               |||||||||||||||||||
Sbjct: 1381870 ttccaaaagaaagtttgca 1381888
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 68      ttccaaaagaaagtttgca 86
               |||||||||||||||||||
Sbjct: 1515548 ttccaaaagaaagtttgca 1515566
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>gb|AC156790.2| Mus musculus BAC clone RP24-359N3 from chromosome 14, complete sequence
          Length = 233946

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 211578 atagaatatgaaaagcagt 211596
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>gb|AC110196.9| Mus musculus chromosome 15, clone RP24-343E7, complete sequence
          Length = 154367

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 104715 atagaatatgaaaagcagt 104733
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>emb|AL806532.10| Mouse DNA sequence from clone RP23-387D16 on chromosome X, complete
             sequence
          Length = 209714

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 82044 atagaatatgaaaagcagt 82026
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>emb|AL592422.11| Mouse DNA sequence from clone RP23-218O16 on chromosome 11, complete
             sequence
          Length = 205668

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 69542 atagaatatgaaaagcagt 69524
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>gb|AC163216.10| Mus musculus chromosome 1, clone RP23-69G5, complete sequence
          Length = 260188

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 257950 atagaatatgaaaagcagt 257968
to top
>dbj|D11328.1|MUSHOX35A Mouse Hox 3.5 gene, complete cds
          Length = 3855

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 171  ttatttatgcgcccttaga 189
            |||||||||||||||||||
Sbjct: 1578 ttatttatgcgcccttaga 1560
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>emb|AL732603.3| Mouse DNA sequence from clone RP23-154H8 on chromosome 2, complete
             sequence
          Length = 87251

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    atagaatatgaaaagcagt 48
             |||||||||||||||||||
Sbjct: 54994 atagaatatgaaaagcagt 55012
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>emb|AL669955.6| Mouse DNA sequence from clone RP23-188F1 on chromosome 4, complete
              sequence
          Length = 114881

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 30     atagaatatgaaaagcagt 48
              |||||||||||||||||||
Sbjct: 108629 atagaatatgaaaagcagt 108647


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,023,721
Number of Sequences: 3902068
Number of extensions: 2023721
Number of successful extensions: 143103
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142636
Number of HSP's gapped (non-prelim): 467
length of query: 193
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 171
effective length of database: 17,147,199,772
effective search space: 2932171161012
effective search space used: 2932171161012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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