>Y3578_PSEAE (Q9HY42) Hypothetical protein PA3578|
          Length = 261

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 48/102 (47%), Positives = 60/102 (58%)
 Frame = -3

Query: 456 PSIDEIRNLACRGLIVTGPAPAGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWGRKL 277
           P    +  L  RG+IVT     G   DF +RFF P  G+DEDPVTGS HC L PYW ++L
Sbjct: 162 PDFAALARLPWRGVIVTA---RGLQKDFVSRFFAPAMGVDEDPVTGSAHCSLIPYWAQRL 218

Query: 276 GKQKLTAFQASPRGGTLYLQLDDANQRVQIQGEALTVMDGTL 151
            K  LTA Q S RGG L+ +L+   +RV I G A+ V  G +
Sbjct: 219 NKLSLTAQQCSARGGELWCRLE--GERVSIAGHAVLVASGRI 258

>Y283_BACHD (Q9KG32) Hypothetical protein BH0283|
          Length = 265

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 46/106 (43%), Positives = 67/106 (63%)
 Frame = -3

Query: 465 DILPSIDEIRNLACRGLIVTGPAPAGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWG 286
           ++ P+   +  +  RG+IVT  + + + YDF +R F P  G++EDPVTGS HC L PYW 
Sbjct: 162 ELNPNFSLLEQIDTRGIIVTSKSTS-TEYDFISRCFFPAVGVNEDPVTGSAHCCLGPYWQ 220

Query: 285 RKLGKQKLTAFQASPRGGTLYLQLDDANQRVQIQGEALTVMDGTLL 148
            KL K +  A+QAS RGG L ++L   + RV + G+A+TV+   LL
Sbjct: 221 EKLNKNEFLAYQASKRGGMLKIKLQ--HDRVFLLGQAVTVLRSELL 264

>PHZ1_MOUSE (Q9CXN7) Probable oxidoreductase 3110049J23Rik|
          Length = 288

 Score = 89.0 bits (219), Expect = 6e-18
 Identities = 50/108 (46%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
 Frame = -3

Query: 459 LPSIDEIRNLACRGLIVTGPAPAGSG---YDFFTRFFCPKFGIDEDPVTGSIHCVLAPYW 289
           LP+I++   +  RGLI+T     G     YDF++R F P  G+ EDPVTGS H +L PYW
Sbjct: 184 LPAIEKTGKV--RGLILTVKGEPGGQTALYDFYSRCFAPWVGVAEDPVTGSTHTLLGPYW 241

Query: 288 GRKLGKQKLTAFQASPRGGTLYLQLDDANQRVQIQGEALTVMDGTLLA 145
             +LGK+++ AFQ S RGG L + L   + RV I+G A+ V++GTL A
Sbjct: 242 SEELGKKEMRAFQCSRRGGELDINL-RPDGRVDIKGGAVIVLEGTLTA 288

>Y2770_PSEAE (Q9I073) Hypothetical protein PA2770|
          Length = 259

 Score = 87.8 bits (216), Expect = 1e-17
 Identities = 46/109 (42%), Positives = 64/109 (58%)
 Frame = -3

Query: 477 KEVVDILPSIDEIRNLACRGLIVTGPAPAGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLA 298
           K +  + P    ++ L CRG+ VT  +     +DF +R+F P  G++EDPVTGS H  LA
Sbjct: 154 KTIAALAPDFARLKGLPCRGVAVTARSQR---FDFVSRWFGPNVGVNEDPVTGSAHTSLA 210

Query: 297 PYWGRKLGKQKLTAFQASPRGGTLYLQLDDANQRVQIQGEALTVMDGTL 151
           PYW ++LGK +L+A Q   R G   L+ D   +RV I G+A   M GTL
Sbjct: 211 PYWAQRLGKTRLSAEQGGARKGR--LECDVRGERVVISGKAALYMSGTL 257

>PHZ2_MOUSE (Q9DCG6) Probable oxidoreductase 0610038K03Rik|
          Length = 288

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 50/108 (46%), Positives = 70/108 (64%), Gaps = 3/108 (2%)
 Frame = -3

Query: 459 LPSIDEIRNLACRGLIVTGPAPAGSG---YDFFTRFFCPKFGIDEDPVTGSIHCVLAPYW 289
           LP+I++   +  RGLI+T     G     YDF++R+F P  GI EDPVTGS H VL+ YW
Sbjct: 184 LPAIEKTGKV--RGLILTVKGEPGGQTPPYDFYSRYFAPWVGIAEDPVTGSAHTVLSSYW 241

Query: 288 GRKLGKQKLTAFQASPRGGTLYLQLDDANQRVQIQGEALTVMDGTLLA 145
            ++L K+++ AFQ S RGG L + L   + RV I+G A+ V++GTL A
Sbjct: 242 SQQLRKKEMRAFQCSRRGGELDISL-RPDGRVDIKGGAVIVLEGTLTA 288

>ULA4_HUMAN (P30039) MAWD binding protein (Unknown protein 32 from 2D-page of|
           liver tissue)
          Length = 288

 Score = 85.1 bits (209), Expect = 9e-17
 Identities = 45/96 (46%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
 Frame = -3

Query: 423 RGLIVT---GPAPAGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWGRKLGKQKLTAF 253
           +GLI+T    P      +DF++R+F P  G+ EDPVTGS H VL+ YW + LGK+++ AF
Sbjct: 194 KGLILTLKGEPGGQTQAFDFYSRYFAPWVGVAEDPVTGSAHAVLSSYWSQHLGKKEMHAF 253

Query: 252 QASPRGGTLYLQLDDANQRVQIQGEALTVMDGTLLA 145
           Q S RGG L + L   + RV I+G A  V++GTL A
Sbjct: 254 QCSHRGGELGISL-RPDGRVDIRGGAAVVLEGTLTA 288

>YX21_CAUCR (Q9A3I3) Hypothetical protein CC3221|
          Length = 275

 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 1/94 (1%)
 Frame = -3

Query: 414 IVTGPAPAGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWGRKLGKQKLTAFQASP-R 238
           +V   A AG+ Y   +RFF P FGI EDP TGS HC+L P +G KLG  +L   QA P R
Sbjct: 182 VVVAQADAGADYAVVSRFFAPGFGIPEDPATGSAHCILMPLFGDKLGAGRLKFHQAYPGR 241

Query: 237 GGTLYLQLDDANQRVQIQGEALTVMDGTLLA*PA 136
           GG   L+ ++   RV ++G   TVM+  L   PA
Sbjct: 242 GGD--LECENRGARVLLRGRGFTVMESQLRLEPA 273

>Y3195_VIBCH (Q9KMG3) Hypothetical protein VCA0395|
          Length = 279

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 39/93 (41%), Positives = 48/93 (51%), Gaps = 11/93 (11%)
 Frame = -3

Query: 477 KEVVDILPSIDEIRNLA-----------CRGLIVTGPAPAGSGYDFFTRFFCPKFGIDED 331
           +++V +LPS++ + N                LIVT  A   SGY    R+F PK GI ED
Sbjct: 165 RDLVLVLPSVEAVMNFQPDDDRLREINEYHALIVTA-ANGNSGY--VLRYFAPKIGISED 221

Query: 330 PVTGSIHCVLAPYWGRKLGKQKLTAFQASPRGG 232
             TGS  C LAPYW +KLG   L A Q S  GG
Sbjct: 222 LATGSAQCSLAPYWFKKLGSDALNARQLSMSGG 254

>Y3446_CLOAB (P58293) Hypothetical protein CAC3446|
          Length = 302

 Score = 37.0 bits (84), Expect = 0.027
 Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
 Frame = -3

Query: 465 DILPSIDEIRNLACRGLIVTGPAPAGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPY-- 292
           D+L  + +I  + C G  V       S      R F P  GI+EDPVTG+ +  L  Y  
Sbjct: 186 DVLSKLSKI--IKCNGYYVFAVTSEDSDILIHGRMFAPAIGINEDPVTGNANGPLGAYLV 243

Query: 291 ------WGRKLGKQKLTAFQASPRGGTLYLQL---DDANQRVQIQGEALTVMDGTLL 148
                 +   + K K    +A  R G + +++    +    V+I G A+ V    L+
Sbjct: 244 HHKLACYDNSIFKFKAKQGEAIGRQGIIEVEVRVDKEEPVEVKISGNAVVVFKSELV 300

>YHI9_YEAST (P38765) Hypothetical 32.6 kDa protein in DAP2-SLT2 intergenic|
           region
          Length = 294

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
 Frame = -3

Query: 420 GLIVTGPAP-AGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWGRKLGKQKLTAFQAS 244
           G+I+ GP   A     +  R F P   + EDPV GS    LA Y       +K T    S
Sbjct: 194 GIILAGPKKEAAIKNSYEMRAFAPVINVYEDPVCGSGSVALARYLQEVYKFEKTTDITIS 253

Query: 243 -----PRGGTLYLQLD---DANQRVQIQGEALTVMDGTL 151
                 R G +   +    D +    I G A TV+DG +
Sbjct: 254 EGGRLKRNGLMLASIKKEADNSTSYYIAGHATTVIDGKI 292

>PHZF_PSECL (Q51520) Phenazine biosynthesis protein phzF|
          Length = 278

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
 Frame = -3

Query: 393 AGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWGR----------------KLGKQKL 262
           AG+G  + +R F P +G+ ED  TGS    LA +  R                ++G+  L
Sbjct: 188 AGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQQIEILQGVEIGRPSL 247

Query: 261 TAFQASPRGGTLYLQLDDANQRVQIQGEALTVMDGTLL 148
              +A  R         D   RV++ G  +T   GT++
Sbjct: 248 MFARAEGRA--------DQLTRVEVSGNGVTFGRGTIV 277

>SUIS_RAT (P23739) Sucrase-isomaltase, intestinal [Contains: Sucrase (EC|
            3.2.1.48); Isomaltase (EC 3.2.1.10)]
          Length = 1840

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 23/83 (27%), Positives = 40/83 (48%)
 Frame = -3

Query: 357  CPKFGIDEDPVTGSIHCVLAPYWGRKLGKQKLTAFQASPRGGTLYLQLDDANQRVQIQGE 178
            C + G    PV+G +  V   Y+  +     LT+ Q  P G T  LQL+  N R+++   
Sbjct: 960  CTQRGCLWQPVSG-LSNVPPYYFPPENNPYTLTSIQPLPTGITAELQLNPPNARIKLPSN 1018

Query: 177  ALTVMDGTLLA*PACLWQFRIHD 109
             ++ +   +   P  + QF+I+D
Sbjct: 1019 PISTLRVGVKYHPNDMLQFKIYD 1041

>PHZF_PSEFL (Q51792) Phenazine biosynthesis protein phzF|
          Length = 278

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
 Frame = -3

Query: 393 AGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWGR----------------KLGKQKL 262
           AG+G  + +R F P +G+ ED  TGS    LA +  R                ++G+  L
Sbjct: 188 AGAGRRWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHGQIEFGQPVEILQGVEIGRPSL 247

Query: 261 TAFQASPRGGTLYLQLDDANQRVQIQGEALTVMDGTLL 148
              +A  R   L         RV++ G  +T   GT++
Sbjct: 248 MFAKAEGRAEQL--------TRVEVSGNGVTFGRGTIV 277

>PHZF_PSEAE (O69754) Phenazine/pyocyanine biosynthesis protein phzF|
          Length = 278

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
 Frame = -3

Query: 393 AGSGYDFFTRFFCPKFGIDEDPVTGSIHCVLAPYWGR----KLGKQ-KLTAFQASPRGGT 229
           AG+G  + +R F P +G+ ED  TGS    LA +  R      G+Q ++       R   
Sbjct: 188 AGAGRHWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHRQIPYGQQIEILQGVEIGRPSR 247

Query: 228 LYLQLDDANQR---VQIQGEALTVMDG 157
           +Y + + A +R   V++ G      +G
Sbjct: 248 MYARAEGAGERVSAVEVSGNGAAFAEG 274

>Y1330_DEIRA (Q9RUQ2) Hypothetical protein DR1330|
          Length = 308

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 456 PSIDEIRNLACRGLIVTGPAPAGSGYD-FFTRFFCPKFGIDEDPVTGS 316
           P +  I  L+    +V+  A A  G + F  R F P  GI EDPVTGS
Sbjct: 193 PDLPRIAELSRELGVVSVYAYAPVGVNRFAARDFAPLVGIPEDPVTGS 240

>Y1019_SYNY3 (P73125) Hypothetical protein slr1019|
          Length = 306

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 8/78 (10%)
 Frame = -3

Query: 366 RFFCPKFGIDEDPVTGSIHCVLAPYWGRKL---GKQKLTAFQASPRGGTLYLQL-----D 211
           R F P  GI EDP TGS    L  Y   +L   G       Q    G    LQL      
Sbjct: 223 RMFAPGLGIAEDPATGSGVAALGGYLDDRLDTPGSHHWQIEQGKALGRPSQLQLTVVKDG 282

Query: 210 DANQRVQIQGEALTVMDG 157
              + V++ G ++ V +G
Sbjct: 283 QGIRAVKVAGRSVLVSEG 300

>HIFE2_HAEIN (P45995) Minor fimbrial subunit hifE precursor|
          Length = 437

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +1

Query: 292 IGCQNTMYTASNGVLIYPKFWAEETCKEVITRSGRRRSCNNETPAGQVS 438
           + C NT Y  +NG  ++P      T ++  T +G       +T +GQ +
Sbjct: 311 VNCDNTTYNKANGKWLFPVVKVTFTDEDGTTNNGTNDLLRTQTGSGQAT 359

>SELU_BORBR (Q7WE96) tRNA 2-selenouridine synthase (EC 2.9.1.-)|
           (Selenophosphate-dependent tRNA 2-selenouridine
           synthase)
          Length = 368

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 244 RCLKCRQFLLPQLSAPIGCQNTMYTASNGVLIYPKFWAEET 366
           R   CRQF++   S  IG  +  +    G+  YP  W E+T
Sbjct: 204 RAAGCRQFVVEDESQAIGSCSLPFGLYQGMQRYPVVWLEDT 244

>YDDE_ECOLI (P37757) Protein yddE (ORFB)|
          Length = 297

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
 Frame = -3

Query: 438 RNLACRGLIVTGPAPAGSGYDFFTRFFCPKFGIDEDPVTGS---------IHCVLAPYWG 286
           + + C G       P  +  D   R F P  GI EDPVTG+         +H  + P+ G
Sbjct: 189 KKIGCNGFFPFQIRPGKNETD--GRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDG 246

Query: 285 RKLGKQKLTAFQASPRGGTLYLQL---DDANQRVQIQGEAL 172
             L + K    +A  R G + + +   D+  ++V I G A+
Sbjct: 247 NVL-RVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGTAV 286

>YDDE_ECO57 (P58292) Protein yddE|
          Length = 297

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
 Frame = -3

Query: 438 RNLACRGLIVTGPAPAGSGYDFFTRFFCPKFGIDEDPVTGS---------IHCVLAPYWG 286
           + + C G       P  +  D   R F P  GI EDPVTG+         +H  + P+ G
Sbjct: 189 KQIGCNGFFPFQIRPGKNETD--GRMFSPAIGIVEDPVTGNANGPMGAWLVHHNVLPHDG 246

Query: 285 RKLGKQKLTAFQASPRGGTLYLQL---DDANQRVQIQGEAL 172
             L + K    +A  R G + + +   D+  ++V I G A+
Sbjct: 247 NVL-RVKGHQGRALGRDGMIEVTVTIRDNQPEKVTISGAAV 286

>DPOLA_TRYBB (P27727) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA|
           polymerase I)
          Length = 1339

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 308 QCILPVTGSSSIPNFGQKKRVKKS*PDPAGAGPVTMRPLQAKFLISSMLG 457
           +CILP      + +  + KR+ KS  DP     + +R L  K   +SM G
Sbjct: 803 KCILPKVIRGLVDSRREIKRMMKSEKDPGNLAMLEIRQLALKLTANSMYG 852


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,620,012
Number of Sequences: 219361
Number of extensions: 1707867
Number of successful extensions: 4043
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 3961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4042
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)