>K1543_HUMAN (Q9P1Y5) Protein KIAA1543|
          Length = 1249

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 25/72 (34%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = -1

Query: 404 PSAASGEPSRRFGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPRPSRHDRPT*PRPAPIQ 225
           P AAS  P+RR  A R                  P   PS SPR  +H RP   R AP+ 
Sbjct: 752 PKAASPSPARRVPATR----------------RSPGPGPSQSPRSPKHTRPAELRLAPLT 795

Query: 224 TL--PVHNAASL 195
            +  P H+  SL
Sbjct: 796 RVLTPPHDVDSL 807

>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -1

Query: 404 PSAASGEPSRRFGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPRPSRHDRPT*PRPAP 231
           PS A+     R  A RP                 P+  PS  PRP+   +P  PRPAP
Sbjct: 83  PSQAAPAAGDRAAAPRPSAAPKAPAAQQPAAPSAPAPAPSQGPRPTPGPKPA-PRPAP 139

>DROS_DROSI (Q6XMH8) Drosocin precursor|
          Length = 64

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 284 YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 177
           YSPRP+ H RP   R   +  +  H A + IRPPP+
Sbjct: 27  YSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61

>DROS_DROME (P36193) Drosocin precursor|
          Length = 64

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = -1

Query: 284 YSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 177
           YSPRP+ H RP   R   +  +  H A + IRPPP+
Sbjct: 27  YSPRPTSHPRPIRVRREAL-AIEDHLAQAAIRPPPI 61

>PDC6I_HUMAN (Q8WUM4) Programmed cell death 6-interacting protein|
           (PDCD6-interacting protein) (ALG-2-interacting protein
           1) (Hp95)
          Length = 868

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -1

Query: 293 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 180
           TP+Y   P+    PT P PAP +T+P        RPPP
Sbjct: 724 TPAYQSSPAGGHAPTPPTPAP-RTMPPTKPQPPARPPP 760

>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)|
          Length = 1285

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -1

Query: 302  PSWTPSYSPRPSRHDRPT*---PRPAPIQTLPVHNAASLIRPPPV 177
            PS TP+ SPRP     P+     +PAP+ T PV  A +++ P PV
Sbjct: 902  PSTTPT-SPRPQAQPSPSMVGHQQPAPVYTQPVCFAPNMMYPVPV 945

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 302 PSWTPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 177
           P+ TP++SP P  +  P    P P   LP+ ++     PPPV
Sbjct: 311 PTPTPTFSPPPPAYSPPPTYSPPPPTYLPLPSSPIYSPPPPV 352

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (Motch B) [Contains: Notch 2 extracellular truncation;
            Notch 2 intracellular domain]
          Length = 2470

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LQLSCFV*SALQHGADQNHTCRL--FCLSAGRYHYCTC 109
            L +SC   +ALQ G    H C+    C++AG  H+C C
Sbjct: 1099 LNVSCKA-AALQKGVPVEHLCQHSGICINAGNTHHCQC 1135

>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            [Contains: Notch 2 extracellular truncation; Notch 2
            intracellular domain]
          Length = 2471

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +2

Query: 2    LQLSCFV*SALQHGADQNHTCRL--FCLSAGRYHYCTC 109
            L +SC   +ALQ G    H C+    C++AG  H+C C
Sbjct: 1101 LNVSCKA-AALQKGVPVEHLCQHSGICINAGNTHHCQC 1137

>K1543_MOUSE (Q80VC9) Protein KIAA1543|
          Length = 1252

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 24/72 (33%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -1

Query: 404 PSAASGEPSRRFGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPRPSRHDRPT*PRPAPIQ 225
           P AAS  P+RR  AAR                  P   PS +PR  +H RP   + AP+ 
Sbjct: 750 PKAASPSPARRAPAAR----------------RSPGPGPSPTPRSPKHARPAELKLAPLT 793

Query: 224 TL--PVHNAASL 195
            +  P H+  SL
Sbjct: 794 RVLTPPHDVDSL 805

>IF1C_SOYBN (Q94KR7) Translation initiation factor IF-1, chloroplast precursor|
          Length = 138

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 293 TPSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 177
           TP   PR   H  P+  + +P+   P H   S + PPP+
Sbjct: 7   TPILHPRYCHHPTPSCTQFSPLALPPFHRTLSFLAPPPL 45

>ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)|
          Length = 864

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 23/67 (34%), Positives = 26/67 (38%)
 Frame = -1

Query: 398 AASGEPSRRFGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPRPSRHDRPT*PRPAPIQTL 219
           AASGE  R  G   P                   + PS  PRPSR   PT  RPA +   
Sbjct: 186 AASGENKRANGNNSPSLSNG-------------GFKPSRPPRPSRPPPPTPRRPASVNGS 232

Query: 218 PVHNAAS 198
           P  N+ S
Sbjct: 233 PSTNSDS 239

>SC6A5_MOUSE (Q761V0) Sodium- and chloride-dependent glycine transporter 2|
           (GlyT2) (GlyT-2) (Solute carrier family 6 member 5)
          Length = 799

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 272 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 177
           P   D P  PR +P Q LP    A+ ++PP V
Sbjct: 22  PGHRDSPRAPRTSPEQDLPAEAPAATVQPPRV 53

>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 290 PSYSPRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPP 180
           P+Y+P P     P  P+P P    P     S + PPP
Sbjct: 72  PTYTPSPKPTPPPATPKPTPPTYTPSPKPKSPVYPPP 108

>ATX2_HUMAN (Q99700) Ataxin-2 (Spinocerebellar ataxia type 2 protein)|
            (Trinucleotide repeat-containing gene 13 protein)
          Length = 1312

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = -1

Query: 302  PSWTPSYSPRPSRHDRPT*---PRPAPIQTLPVHNAASLIRPPPV 177
            PS TP+ SPRP     P+     +P P+ T PV  A +++ P PV
Sbjct: 930  PSTTPT-SPRPQAQPSPSMVGHQQPTPVYTQPVCFAPNMMYPVPV 973

>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 278 PRPSRHDRPT*PRPAPIQTLPVHNAASLIRPPPVCMS 168
           P P+    P  P PAP Q      AA+  RP PV +S
Sbjct: 765 PAPAPPSTPPGPEPAPAQPAAPRAAAAQARPRPVAVS 801

>PGCB_BOVIN (Q28062) Brevican core protein precursor|
          Length = 912

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -1

Query: 290 PSYSPRPSRHDRPT*PRPA-----PIQTLPVHNAASLIRPPP 180
           P  SP P  +D P  PRP      P +TLP     +L  PPP
Sbjct: 518 PGVSPPP--YDEPEAPRPPRVLGPPTKTLPTPREGNLASPPP 557

>AMYG_CANAL (O74254) Glucoamylase 1 precursor (EC 3.2.1.3) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase)
          Length = 946

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +1

Query: 109 HIDCTHA*LSIRTQSDWS-QYDIHTGGGLISDAALWTGSV*IGAGRGQ--VGRSCLDGRG 279
           H   THA     T +D + +YDIH   GLI + A++   + I   +    +GRS   G G
Sbjct: 560 HDLATHAISPNATHADGTVEYDIHNIYGLIQERAIYEALLEIHPNKRPFIIGRSSFAGSG 619

Query: 280 LYDG 291
            Y G
Sbjct: 620 KYMG 623

>PROK2_MOUSE (Q9QXU7) Prokineticin-2 precursor (PK2) (Protein Bv8 homolog)|
          Length = 128

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 264
           D   GGG+    ++W  S+ I    GQVG SC
Sbjct: 36  DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67

>SC6A5_RAT (P58295) Sodium- and chloride-dependent glycine transporter 2|
           (GlyT2) (GlyT-2) (Solute carrier family 6 member 5)
          Length = 799

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -1

Query: 272 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 177
           P   D P  PR +P Q LP    A+ ++PP V
Sbjct: 22  PGHRDSPRAPRTSPEQDLPAAAPAAAVQPPRV 53

>PROK2_RAT (Q8R413) Prokineticin-2 precursor (PK2)|
          Length = 107

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 169 DIHTGGGLISDAALWTGSV*IGAGRGQVGRSC 264
           D   GGG+    ++W  S+ I    GQVG SC
Sbjct: 36  DSQCGGGMCCAVSIWVKSIRICTPMGQVGDSC 67

>GUNH_CLOTM (P16218) Endoglucanase H precursor (EC 3.2.1.4) (EGH)|
           (Endo-1,4-beta-glucanase) (Cellulase H)
          Length = 900

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -1

Query: 302 PSWTPSYSPRPSRHDRPT*PRPAP 231
           P   PSYSP+PS   RPT P   P
Sbjct: 631 PGTYPSYSPKPSPTPRPTKPPVTP 654

>GANA_ASPAC (P48842) Arabinogalactan endo-1,4-beta-galactosidase precursor (EC|
           3.2.1.89) (Endo-1,4-beta-galactanase) (Galactanase)
          Length = 350

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -3

Query: 414 ALETI---GGLRRAIPEIWGGAADGELQLDHNVEKNKSMRA 301
           ALETI    G+      +W   +DG   LD+N+E  K ++A
Sbjct: 47  ALETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKA 87

>ILVD_BACSK (Q5WEM9) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 554

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 139 IRTQSDWSQYDIHTGGGLISDAALWTGSV*IGAGRGQVGRSCLDGRGLYDGV 294
           I   SD+S  D+H  GG+   AA+    + +GA +G   R  + G+ LY+ V
Sbjct: 304 ISPASDYSMDDVHKAGGV---AAIMKELIEMGAVKGD--RITITGKSLYENV 350

>CQ039_HUMAN (Q8IVV7) Protein C17orf39|
          Length = 300

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 12/92 (13%)
 Frame = -1

Query: 416 TRWRPSA------ASGEPSR------RFGAARPXXXXXXXXXXXXXXX*GPSWTPSYSPR 273
           +RWRP        A G PSR      R G + P                 P+  P     
Sbjct: 25  SRWRPERLLRRQRAGGRPSRPHPARARPGLSLPATLLGSRAAAAVPLPLPPALAPGDPAM 84

Query: 272 PSRHDRPT*PRPAPIQTLPVHNAASLIRPPPV 177
           P R + P      P       +AASLI PPP+
Sbjct: 85  PVRTECP------PPAGASAASAASLIPPPPI 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,687,572
Number of Sequences: 219361
Number of extensions: 1220489
Number of successful extensions: 3384
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3370
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)