ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44e10 |
|---|---|
| Clone Library Name | barley_pub |
>NUP1_YEAST (P20676) Nucleoporin NUP1 (Nuclear pore protein NUP1)| Length = 1076 Score = 34.3 bits (77), Expect = 0.16 Identities = 25/80 (31%), Positives = 35/80 (43%) Frame = +3 Query: 192 ESPVSPTESKFKPRISPADLTARLFGLAQSRATNPVIPSPISGHEVSPGSKVRNFNPSVK 371 ++P T S F P P + L G + ATN + PS I G + GS NPS Sbjct: 967 QTPSFNTNSSFTPSTVPNINFSGLNGGITNTATNALRPSDIFGANAASGSNSNVTNPS-- 1024 Query: 372 SHILKLVLHGGTGDAPSSSW 431 + GG G P++S+ Sbjct: 1025 ------SIFGGAGGVPTTSF 1038
>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)| Length = 1338 Score = 31.6 bits (70), Expect = 1.0 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 5/58 (8%) Frame = +3 Query: 156 PFTCR--SQLHIDLESPVSPT--ESKFKPRISPA-DLTARLFGLAQSRATNPVIPSPI 314 P+TC S ++ + SPV E + +P+ +P A FG ++ +PV+PSP+ Sbjct: 813 PYTCGGDSDQYVLMSSPVGRILEEERLEPQATPGPSQAASAFGAGPTQPPHPVVPSPV 870
>PPNK_RHOBA (Q7UWB8) Probable inorganic polyphosphate/ATP-NAD kinase (EC| 2.7.1.23) (Poly(P)/ATP NAD kinase) Length = 311 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/74 (27%), Positives = 35/74 (47%) Frame = +3 Query: 168 RSQLHIDLESPVSPTESKFKPRISPADLTARLFGLAQSRATNPVIPSPISGHEVSPGSKV 347 R QL + SP+SP ++P + AD L + +T+ V+ I G ++ G +V Sbjct: 215 RRQLQAIVISPISPHTLTYRPLVDSADTRLELAVTEPNESTSIVVDGRILG-QLKSGDRV 273 Query: 348 RNFNPSVKSHILKL 389 R V +L++ Sbjct: 274 RVHRAPVSFEMLRV 287
>LPP_CHICK (Q5F464) Lipoma-preferred partner homolog| Length = 604 Score = 30.4 bits (67), Expect = 2.3 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%) Frame = +3 Query: 168 RSQLHIDLESPVS-----PTESKFKPRISPADLTARLFGLAQSRATNPVIPSPISGHE 326 RS L +++S S + S +KPRI G + S AT P + +P++GH+ Sbjct: 113 RSSLDAEIDSLTSILADLESSSPYKPRIQQGS------GTSSSAATTPSVSTPVTGHK 164
>NFX1_HUMAN (Q12986) Transcriptional repressor NF-X1 (EC 6.3.2.-) (Nuclear| transcription factor, X box-binding, 1) Length = 1104 Score = 29.6 bits (65), Expect = 3.9 Identities = 21/66 (31%), Positives = 32/66 (48%) Frame = -2 Query: 438 RTSKMKKARPPSRREEPVSKCEISHLG*NFELLTREKLRVR*LAMV*LGLLHGIELVQKA 259 +++ ++A PPSR EP S C + HL F R L M L + + + Q+ Sbjct: 11 KSTLRQEAPPPSRAAEPRSSCTVHHLPVTFP--------GRSLMMKSLLFISIVIIRQEG 62 Query: 258 EPSSQQ 241 +P SQQ Sbjct: 63 KPKSQQ 68
>HUTU_STRCO (Q9KZ75) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 572 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 351 NFNPSVKSHILKLVLHGGTGDAPSSSWKS 437 N +P V H KLV++GGTG A + W+S Sbjct: 32 NLDPEVAEHPDKLVVYGGTGKA-ARDWRS 59
>HUTU_STRAW (Q82HL2) Urocanate hydratase (EC 4.2.1.49) (Urocanase)| (Imidazolonepropionate hydrolase) Length = 554 Score = 29.6 bits (65), Expect = 3.9 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 351 NFNPSVKSHILKLVLHGGTGDAPSSSWKS 437 N +P V H KLV++GGTG A + W+S Sbjct: 32 NLDPEVAEHPDKLVVYGGTGKA-ARDWRS 59
>SYNPO_RAT (Q9Z327) Synaptopodin| Length = 931 Score = 28.9 bits (63), Expect = 6.7 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 7/84 (8%) Frame = +3 Query: 153 TPFTCRSQLHIDLESPVSPTESKFKPRISPADLTARLFGLAQSRATNPVIPSPISGHE-- 326 TP S++H+ L P S TAR FG+ T+ + SP+ G Sbjct: 450 TPTKVYSEVHLTLAKPASVVNR-----------TARPFGMQSPGTTSQIEQSPMMGRRHF 498 Query: 327 -----VSPGSKVRNFNPSVKSHIL 383 P S + + +P + HI+ Sbjct: 499 GEKAWAPPASSMADRSPQPQRHIM 522
>PK3CD_MOUSE (O35904) Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic| subunit delta isoform (EC 2.7.1.153) (PI3-kinase p110 subunit delta) (PtdIns-3-kinase p110) (PI3K) (p110delta) Length = 1043 Score = 28.9 bits (63), Expect = 6.7 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%) Frame = -2 Query: 462 QPEPTQPVRTSKMKKARPPSRREEPVSKCEISHLG*NFELLTREKLRV--R*LAMV*LGL 289 Q P V+ + K P+++ VS + + EL+ K+ R +V GL Sbjct: 289 QSNPAPQVQKPRAKPPPIPAKKPSSVSLWSLEQPF-SIELIEGRKVNADERMKLVVQAGL 347 Query: 288 LHGIELVQKAEPSSQQGKCEA*IWIQ 211 HG E++ K SS+ C +W Q Sbjct: 348 FHGNEMLCKTVSSSEVNVCSEPVWKQ 373
>UBP37_HUMAN (Q86T82) Ubiquitin carboxyl-terminal hydrolase 37 (EC 3.1.2.15)| (Ubiquitin thioesterase 37) (Ubiquitin-specific-processing protease 37) (Deubiquitinating enzyme 37) Length = 979 Score = 28.5 bits (62), Expect = 8.7 Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 4/55 (7%) Frame = +2 Query: 44 NLFFYGV-VEYTCMY---R*HMITTKFSELPRISVCYIQSYSVHMSITTSH*LGE 196 +LFF +EY+C + ++ KF+ LPR+ + +++ YS +++++ ++ +G+ Sbjct: 526 DLFFRAEELEYSCEKCGGKCALVRHKFNRLPRVLILHLKRYSFNVALSLNNKIGQ 580
>FRMD6_HUMAN (Q96NE9) FERM domain-containing protein 6| Length = 622 Score = 28.5 bits (62), Expect = 8.7 Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%) Frame = -1 Query: 307 DGITGFVARD*ASPKSRAVKSAGEMRGLNLDSVGDTGLSKSM*SCDRH---VNGVGLYIT 137 +G +G + ++ S S + ++ ++RG + DS+ T K S DRH ++ + LY Sbjct: 494 NGHSGLIVKEIGSSTSSSSETVVKLRGQSTDSLPQTICRKPKTSTDRHSLSLDDIRLYQK 553 Query: 136 D*NTWKLRKLCSD 98 D ++ LC D Sbjct: 554 D--FLRIAGLCQD 564
>PK3CD_HUMAN (O00329) Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic| subunit delta isoform (EC 2.7.1.153) (PI3-kinase p110 subunit delta) (PtdIns-3-kinase p110) (PI3K) (p110delta) Length = 1044 Score = 28.5 bits (62), Expect = 8.7 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Frame = -2 Query: 456 EPTQPVRTSKMKKARPPSRREEPVSKCEISHLG*NF--ELLTREKLRV--R*LAMV*LGL 289 E + P + +A+PP + S + L F EL+ K+ R +V GL Sbjct: 288 EQSNPAPQVQKPRAKPPPIPAKKPSSVSLWSLEQPFRIELIQGSKVNADERMKLVVQAGL 347 Query: 288 LHGIELVQKAEPSSQQGKCEA*IWIQ 211 HG E++ K SS+ C +W Q Sbjct: 348 FHGNEMLCKTVSSSEVSVCSEPVWKQ 373
>PTN5_MOUSE (P54830) Tyrosine-protein phosphatase non-receptor type 5 (EC| 3.1.3.48) (Protein-tyrosine phosphatase striatum-enriched) (STEP) (Neural-specific protein-tyrosine phosphatase) Length = 541 Score = 28.5 bits (62), Expect = 8.7 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = +3 Query: 192 ESPVSPTESKFKPRISPADLTARLFGLAQSRATN 293 E+PV KP PA LT + GL + R +N Sbjct: 189 ETPVFDCVMDIKPETDPASLTVKSMGLQERRGSN 222
>PLS_STAAM (Q931E9) Putative surface protein SAV2496/SAV2497 precursor| Length = 1114 Score = 28.5 bits (62), Expect = 8.7 Identities = 18/69 (26%), Positives = 28/69 (40%) Frame = +3 Query: 213 ESKFKPRISPADLTARLFGLAQSRATNPVIPSPISGHEVSPGSKVRNFNPSVKSHILKLV 392 E KF P ++P G + T P + +P++G +S G K I +L Sbjct: 566 ERKFNPDLAPGTEKVTREGQKGEKTTTPTLKNPLTGEIISKGESKEEI---TKDPINELT 622 Query: 393 LHGGTGDAP 419 +G AP Sbjct: 623 EYGPETIAP 631
>DPYL3_MOUSE (Q62188) Dihydropyrimidinase-related protein 3 (DRP-3) (Unc-33-like| phosphoprotein) (ULIP protein) Length = 570 Score = 28.5 bits (62), Expect = 8.7 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = -1 Query: 124 WKLRKLCSDHVLPVHACIFNYSVEE*IGPQRKEKKVNFFFV 2 W K C D+ L V +N SV++ + KEK VN F V Sbjct: 126 WADGKSCCDYALHVDITHWNDSVKQEVQSLSKEKGVNSFMV 166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,346,585 Number of Sequences: 219361 Number of extensions: 1428997 Number of successful extensions: 3720 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3621 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3718 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
