ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44e07 |
|---|---|
| Clone Library Name | barley_pub |
>PAT5_SOLTU (P15478) Patatin T5 precursor (Potato tuber protein)| Length = 386 Score = 62.4 bits (150), Expect = 5e-10 Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 2/84 (2%) Frame = -1 Query: 444 EALRIEENYLRIQDDSLTGSSVDI--ATKENMEALIGIGKNLLTKTVSRVNIDNGMYETV 271 +AL + NYLR+Q+++LTG++ ++ A++ NM+ L+ +G++LL K+VS+ Sbjct: 308 QALDSQNNYLRVQENALTGTTTELDDASEANMQLLVQVGEDLLKKSVSK----------- 356 Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199 D T EEAL RFAK LS+ +KLR Sbjct: 357 DNPETYEEALKRFAKLLSDRKKLR 380
>PAT3_SOLTU (P11768) Patatin class 1 precursor (Patatin class I) (Potato tuber| protein) Length = 386 Score = 60.8 bits (146), Expect = 1e-09 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Frame = -1 Query: 444 EALRIEENYLRIQDDSLTGSS--VDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETV 271 +A + NYLR+Q+++LTG++ +D A++ NME L+ +G+ LL K VS+ Sbjct: 308 QARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK----------- 356 Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199 D T EEAL RFAK LS+ +KLR Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380
>PAT0_SOLTU (P07745) Patatin precursor (Potato tuber protein)| Length = 386 Score = 60.8 bits (146), Expect = 1e-09 Identities = 36/84 (42%), Positives = 53/84 (63%), Gaps = 2/84 (2%) Frame = -1 Query: 444 EALRIEENYLRIQDDSLTGSS--VDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETV 271 +A + NYLR+Q+++LTG++ +D A++ NME L+ +G+ LL K VS+ Sbjct: 308 QARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK----------- 356 Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199 D T EEAL RFAK LS+ +KLR Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380
>PAT1_SOLTU (P15476) Patatin B1 precursor (Potato tuber protein) (Fragment)| Length = 377 Score = 60.1 bits (144), Expect = 2e-09 Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Frame = -1 Query: 444 EALRIEENYLRIQDDSLTGSS--VDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETV 271 +A + NYLR+Q+++LTG++ +D A++ NME L+ +G+ LL K VS+ Sbjct: 299 QARHSQNNYLRVQENALTGTTTEMDDASEANMELLVQVGETLLKKPVSK----------- 347 Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199 D T EEAL RFAK LS +KLR Sbjct: 348 DSPETYEEALKRFAKLLSNRKKLR 371
>PAT2_SOLTU (P15477) Patatin B2 precursor (Potato tuber protein)| Length = 386 Score = 58.9 bits (141), Expect = 5e-09 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%) Frame = -1 Query: 444 EALRIEENYLRIQDDSLTGSS--VDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETV 271 +A + NYLR+Q+++L G++ +D A++ NME L+ +G+ LL K VS+ Sbjct: 308 QARHSQNNYLRVQENALNGTTTEMDDASEANMELLVQVGETLLKKPVSK----------- 356 Query: 270 DGAGTNEEALVRFAKRLSEERKLR 199 D T EEAL RFAK LS+ +KLR Sbjct: 357 DSPETYEEALKRFAKLLSDRKKLR 380
>EDG5_RAT (P47752) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (G-protein coupled receptor H218) (AGR16) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 33.5 bits (75), Expect = 0.24 Identities = 24/62 (38%), Positives = 36/62 (58%) Frame = +2 Query: 212 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTEDP 391 +S+ L A++L+ P T+S PL F R+ S F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGPVTLSLTPLQWFAREG---SAF--ITLSASVFSLLAIAIERQ 131 Query: 392 VS 397 V+ Sbjct: 132 VA 133
>PEPA_MACMU (P11489) Pepsin A precursor (EC 3.4.23.1)| Length = 388 Score = 32.3 bits (72), Expect = 0.53 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -1 Query: 426 ENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLL---TKTVSRVNIDNGMYETVDG 265 E Y +I DS+T + IA E +A++ G +LL T ++ + D G E DG Sbjct: 249 EGYWQISVDSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDG 305
>PEPA2_MACFU (P27677) Pepsin A-2/A-3 precursor (EC 3.4.23.1) (Pepsin| III-2/III-1) Length = 388 Score = 32.3 bits (72), Expect = 0.53 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -1 Query: 426 ENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLL---TKTVSRVNIDNGMYETVDG 265 E Y +I DS+T + IA E +A++ G +LL T ++ + D G E DG Sbjct: 249 EGYWQISVDSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDG 305
>PEPA1_MACFU (P03954) Pepsin A-1 precursor (EC 3.4.23.1) (Pepsin III-3)| Length = 388 Score = 32.3 bits (72), Expect = 0.53 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -1 Query: 426 ENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLL---TKTVSRVNIDNGMYETVDG 265 E Y +I DS+T + IA E +A++ G +LL T ++ + D G E DG Sbjct: 249 EGYWQISVDSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDG 305
>PEPA_HUMAN (P00790) Pepsin A precursor (EC 3.4.23.1)| Length = 388 Score = 32.0 bits (71), Expect = 0.70 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -1 Query: 426 ENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLL---TKTVSRVNIDNGMYETVDG 265 E Y +I DS+T + IA E +A++ G +LL T ++ + D G E DG Sbjct: 249 EGYWQITVDSITMNGEAIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDG 305
>EDG5_MOUSE (P52592) Sphingosine 1-phosphate receptor Edg-5 (S1P receptor| Edg-5) (Lysophospholipid receptor B2) (Endothelial differentiation G-protein coupled receptor 5) (Sphingosine 1-phosphate receptor 2) (S1P2) Length = 352 Score = 31.2 bits (69), Expect = 1.2 Identities = 23/62 (37%), Positives = 36/62 (58%) Frame = +2 Query: 212 SSESLLAKRTSASSLVPAPSTVSYIPLSMFTRDTVLVSRFLPIPISASMFSLVAISTEDP 391 +S+ L A++L+ T+S P+ F R+ VS F I +SAS+FSL+AI+ E Sbjct: 77 ASDLLAGVAFVANTLLSGHVTLSLTPVQWFARE---VSAF--ITLSASVFSLLAIAIERQ 131 Query: 392 VS 397 V+ Sbjct: 132 VA 133
>PEPA4_MACFU (P27678) Pepsin A-4 precursor (EC 3.4.23.1) (Pepsin I/II)| Length = 388 Score = 31.2 bits (69), Expect = 1.2 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 3/57 (5%) Frame = -1 Query: 426 ENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLL---TKTVSRVNIDNGMYETVDG 265 E Y +I DS+T + IA + +A++ G +LL T ++ + D G E DG Sbjct: 249 EGYWQISVDSITMNGKTIACAKGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDG 305
>GDI1_SCHPO (Q10305) Probable secretory pathway GDP dissociation inhibitor 1| Length = 440 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/55 (38%), Positives = 29/55 (52%) Frame = +1 Query: 208 ALLGEPLGETDERLFIGASTVDGLIHPIVNVYPGYGLGEQILTDPNKRLHVLFGG 372 A L +P ET ER+ + AS++ +YP YGLGE L RL ++GG Sbjct: 195 AYLKKPARETRERILLYASSI-AKFGKSPYIYPLYGLGE--LPQGFARLSAIYGG 246
>Y1693_CLOPE (Q8XJR2) Hypothetical zinc metalloprotease CPE1693 (EC 3.4.24.-)| Length = 335 Score = 30.4 bits (67), Expect = 2.0 Identities = 19/56 (33%), Positives = 31/56 (55%) Frame = -1 Query: 444 EALRIEENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYE 277 E L+I+ N + DD G + +A +E I G ++LTKTV + ++GMY+ Sbjct: 139 EFLKIDGNKIHTTDDFRMGLA--LAKGNPVELEIKRGNDVLTKTVQPILNESGMYQ 192
>MET4_YEAST (P32389) Transcriptional activator of sulfur metabolism MET4| (Methionine-requiring protein 4) Length = 672 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 2/55 (3%) Frame = -1 Query: 339 IGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRFAKRLS--EERKLRQTNLNS 181 I ++L + RVN+ NG Y ++ AG + + + A ++ ++K+R+ N N+ Sbjct: 353 IPTSVLVTLLPRVNVPNGAYNSLISAGFDNDQIDAIAAIMAYHHQKKIRENNSNN 407
>GUAA_CAEEL (Q09580) Probable GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) Length = 792 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +1 Query: 301 YPGYGLGEQILTDPNKRLHVLFGGDIHRGPRERVVLDAQVVLLNA 435 +PG GL +IL +KR ++F G ++ G + ++D LN+ Sbjct: 511 FPGPGLAIRILCASDKRPELMFNGPMYNGDVQGRIIDVTEQFLNS 555
>PEPA_PIG (P00791) Pepsin A precursor (EC 3.4.23.1)| Length = 386 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%) Frame = -1 Query: 426 ENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLLTKTVSRVNI----DNGMYETVDG 265 E Y +I DS+T IA +A++ G +LLT S + I D G E DG Sbjct: 246 EGYWQITLDSITMDGETIACSGGCQAIVDTGTSLLTGPTSAIAINIQSDIGASENSDG 303
>PTSN_KLEOX (P17162) Nitrogen regulatory protein (Enzyme IIA-NTR) [Includes:| Phosphotransferase enzyme IIA component (EC 2.7.1.-) (PTS system EIIA component)] Length = 162 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -1 Query: 369 TKENMEALIGIGKNLLTKTVSR----VNIDNGMYETVDGAGTNEEA 244 TK ++ L + K L KT+ R D +YE + AG+N EA Sbjct: 117 TKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYEIITEAGSNNEA 162
>PEPA3_RABIT (P27822) Pepsin-3 precursor (EC 3.4.23.1) (Pepsin III) (Pepsin A)| Length = 387 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%) Frame = -1 Query: 426 ENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLL---TKTVSRVNIDNGMYETVDG 265 E Y +I DS+T IA ++ +A++ G +LL T +S + G E DG Sbjct: 248 EGYWQITLDSITMDGETIACADSCQAIVDTGTSLLAGPTSAISNIQSYIGASENSDG 304
>THSA_THEK1 (P61112) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = -1 Query: 429 EENYLRIQDDSLTGSSVD----IATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262 EE L+I S+TG + + + K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 261 GTNEEALVR 235 G E LVR Sbjct: 209 GVEESELVR 217
>THSA_PYRKO (P61111) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 548 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%) Frame = -1 Query: 429 EENYLRIQDDSLTGSSVD----IATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGA 262 EE L+I S+TG + + + K +EA+ + + K V V++DN +E G Sbjct: 151 EETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEKKDGKYV--VDLDNIKFEKKAGE 208 Query: 261 GTNEEALVR 235 G E LVR Sbjct: 209 GVEESELVR 217
>MEGF6_HUMAN (O75095) Multiple epidermal growth factor-like domains 6 precursor| (EGF-like domain-containing protein 3) (Multiple EGF-like domain protein 3) Length = 1229 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/40 (45%), Positives = 20/40 (50%) Frame = +3 Query: 189 GWFGAACAPRRASWRNGRAPLHWCQHRRRSHTSHCQCLPG 308 GWFG ACA +R S G A C H T C+C PG Sbjct: 931 GWFGEACA-QRCSCPPGAA----CHH----VTGACRCPPG 961
>YTFT_ECOLI (P39328) Inner membrane ABC transporter permease protein ytfT| Length = 341 Score = 28.5 bits (62), Expect = 7.7 Identities = 18/61 (29%), Positives = 29/61 (47%) Frame = -1 Query: 411 IQDDSLTGSSVDIATKENMEALIGIGKNLLTKTVSRVNIDNGMYETVDGAGTNEEALVRF 232 +QD L GS +DI + AL+ IG L+ T +++ G + GA T + F Sbjct: 47 LQDGRLFGSPIDILNRAAPVALLAIGMTLVIAT-GGIDLSVGAVMAIAGATTAAMTVAGF 105 Query: 231 A 229 + Sbjct: 106 S 106
>THSA_THEK8 (O24731) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 549 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%) Frame = -1 Query: 429 EENYLRIQDDSLTGSSVDIATKENMEALIGIGKNLLTKTVSR--VNIDNGMYETVDGAGT 256 EE LRI S+TG + + + + + K + K + V++DN +E G G Sbjct: 151 EETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEKKDGKYVVDLDNIKFEKKAGEGV 210 Query: 255 NEEALVR 235 E LVR Sbjct: 211 EESELVR 217
>CSG_METSC (P27374) Cell surface glycoprotein precursor (S-layer protein)| Length = 593 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -1 Query: 417 LRIQDDSLTGSSVDIATKENMEALIGIGKNL--LTKTVSRVNIDNGMYET-VDGAGTNEE 247 L I+D + S +++ K +A I K + LTK +++ DN +YET +D E Sbjct: 362 LAIEDIAAKPSGIEVRVKNLGKADI---KKIDPLTKLKIKISCDNDVYETFIDPLSAGES 418 Query: 246 ALVRFAKRLSE 214 +VR+ K + E Sbjct: 419 QIVRWDKIVPE 429
>CSG_METFE (P27373) Cell surface glycoprotein precursor (S-layer protein)| Length = 593 Score = 28.5 bits (62), Expect = 7.7 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -1 Query: 417 LRIQDDSLTGSSVDIATKENMEALIGIGKNL--LTKTVSRVNIDNGMYET-VDGAGTNEE 247 L I+D + S +++ K +A I K + LTK +++ DN +YET +D E Sbjct: 362 LAIEDIAAKPSGIEVRVKNLGKADI---KKIDPLTKLKIKISCDNDVYETFIDPLSAGES 418 Query: 246 ALVRFAKRLSE 214 +VR+ K + E Sbjct: 419 QIVRWDKIVPE 429 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,486,646 Number of Sequences: 219361 Number of extensions: 1310942 Number of successful extensions: 3925 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3817 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3920 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
