ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart44e01 |
|---|---|
| Clone Library Name | barley_pub |
>CTNS_ARATH (P57758) Cystinosin homolog| Length = 270 Score = 77.4 bits (189), Expect = 2e-14 Identities = 38/72 (52%), Positives = 50/72 (69%) Frame = -1 Query: 465 GVLNFGQMGVQAIDQHTLVNFYGNIGKTLLSLETVFFDLLFIIQHYVLYPVKRDENGKAI 286 G+ N+ QM +Q+IDQ++ NFYGN+GKTLLSL ++FFD+LF+ QHYVLYP K+ Sbjct: 195 GLANYLQMVIQSIDQNSWKNFYGNMGKTLLSLISIFFDILFMFQHYVLYPEKKVSKSPET 254 Query: 285 ISERIAPLIRPS 250 E PLI S Sbjct: 255 GEESNEPLIDSS 266
>CTNS_CAEEL (Q09500) Cystinosin homolog| Length = 404 Score = 47.4 bits (111), Expect = 2e-05 Identities = 22/50 (44%), Positives = 33/50 (66%) Frame = -1 Query: 465 GVLNFGQMGVQAIDQHTLVNFYGNIGKTLLSLETVFFDLLFIIQHYVLYP 316 G L+ QM +QA++ + FY N K L ++FFD++F++QHYVLYP Sbjct: 311 GTLDILQMILQAVNVNDWSAFYANPVKFGLGFVSIFFDIIFMVQHYVLYP 360
>CTNS_DROME (Q9VCR7) Cystinosin homolog| Length = 397 Score = 37.7 bits (86), Expect = 0.015 Identities = 20/56 (35%), Positives = 32/56 (57%) Frame = -1 Query: 465 GVLNFGQMGVQAIDQHTLVNFYGNIGKTLLSLETVFFDLLFIIQHYVLYPVKRDEN 298 G L+ QM + A + V+ +G+ K L L +V FD+ F++QHYV Y R+ + Sbjct: 314 GTLSMLQMILNAHNYDDWVSIFGDPTKFGLGLFSVLFDVFFMLQHYVFYRHSRESS 369
>CTNS_MOUSE (P57757) Cystinosin| Length = 367 Score = 35.4 bits (80), Expect = 0.073 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 2/54 (3%) Frame = -1 Query: 465 GVLNFGQMGVQAI--DQHTLVNFYGNIGKTLLSLETVFFDLLFIIQHYVLYPVK 310 G + QM +Q+ DQ TL+ +G+ K L + T+FFD++F IQH+ LY K Sbjct: 309 GSFSLLQMFLQSYNNDQWTLI--FGDPTKFGLGVFTIFFDVVFFIQHFYLYRKK 360
>BAG_STRAG (P27951) IgA FC receptor precursor (Beta antigen) (B antigen)| Length = 1164 Score = 31.2 bits (69), Expect = 1.4 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 15/74 (20%) Frame = +1 Query: 277 LRNDGLT------ILIPFDRVQHIVLNYEEKVE--------ENS-FQRKKSLADISIEIH 411 L ND L L PF++++ IV + ++KVE ENS + K A I++ + Sbjct: 694 LENDALKGYFEKYFLTPFNKIKQIVDDLDKKVEQDQPAPIPENSEMDQAKEKAKIAVSKY 753 Query: 412 *SVLINSLHTHLTK 453 S +++ +H HL K Sbjct: 754 MSKVLDGVHQHLQK 767
>CTNS_HUMAN (O60931) Cystinosin| Length = 367 Score = 30.8 bits (68), Expect = 1.8 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Frame = -1 Query: 465 GVLNFGQMGVQAI--DQHTLVNFYGNIGKTLLSLETVFFDLLFIIQHYVLY 319 G + QM +Q+ DQ TL+ +G+ K L + ++ FD++F IQH+ LY Sbjct: 309 GSFSLLQMFLQSYNNDQWTLI--FGDPTKFGLGVFSIVFDVVFFIQHFCLY 357
>DPOL_METJA (Q58295) DNA polymerase (EC 2.7.7.7) [Contains: Mja pol-1 intein; Mja| pol-2 intein] Length = 1634 Score = 30.4 bits (67), Expect = 2.3 Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Frame = +1 Query: 232 IFFRLI*GPDQRSYPLRNDG--LTILIPFDRVQHIVLNYEEKVEENSFQRKKSLADISIE 405 I F L+ G R P++N G LT+ + V+ ++L+ +++E +F+ + D+S+E Sbjct: 1288 ILFNLV-GIPTRFTPVKNKGYKLTLNPKYGTVKDLMLDEVKEIE--AFEYSGYVYDLSVE 1344 Query: 406 IH*SVLINSLHTH 444 + + L+N+++ H Sbjct: 1345 DNENFLVNNIYAH 1357
>SYL_UREPA (Q9PQC0) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 806 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = -3 Query: 118 FSTDYCKNLNIADLQFCQLKFILFVKIYKNNL 23 F DY K ++ D QF Q +FV++YK+NL Sbjct: 116 FDFDYDKEVDTTDPQFYQWTQWIFVQLYKHNL 147
>TRAF2_MOUSE (P39429) TNF receptor-associated factor 2| Length = 501 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%) Frame = +1 Query: 166 CIFVQTNSN*DSTARTVYISYTIFFRLI*GPDQR--SYPLRNDGLTILIPFDRVQHIVLN 339 C+ V N D T R ++S +FF ++ GP+ +P +L+ + +H++ Sbjct: 391 CLRVYLNG--DGTGRGTHLS--LFFVVMKGPNDALLQWPFNQKVTLMLLDHNNREHVIDA 446 Query: 340 YEEKVEENSFQRKKSLADIS 399 + V +SFQR S +I+ Sbjct: 447 FRPDVTSSSFQRPVSDMNIA 466
>CD40L_MACMU (P63304) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 319 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 411 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125
>CD40L_CERTO (P63305) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 319 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 411 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125
>CD40L_CALJA (Q9BDN3) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 319 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 411 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125
>CD40L_AOTTR (Q9BDM3) CD40 ligand (CD40-L) (Tumor necrosis factor ligand| superfamily member 5) (CD154 antigen) [Contains: CD40 ligand, membrane form; CD40 ligand, soluble form] Length = 261 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = +1 Query: 319 VQHIVLNYEEKVEENSFQRKKSLADISIEIH 411 V+ I+LN EEK +ENSF+ +K + I H Sbjct: 95 VKDIMLNKEEKKKENSFEMQKGDQNPQIAAH 125
>ERS1_YEAST (P17261) Transmembrane protein ERS1 (ERD suppressor)| Length = 260 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -1 Query: 417 TLVNFYGNIGKTLLSLETVFFDLLFIIQHYV 325 +L F N GK LS+ T+ F+ +FI+Q +V Sbjct: 216 SLDTFVTNFGKVGLSMVTLIFNFIFIMQWFV 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,749,639 Number of Sequences: 219361 Number of extensions: 1201465 Number of successful extensions: 2653 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2622 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2653 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
