>HD2B_MAIZE (Q9M4U5) Histone deacetylase 2b (HD2b) (Zm-HD2b)|
          Length = 303

 Score = 82.8 bits (203), Expect = 4e-16
 Identities = 43/57 (75%), Positives = 46/57 (80%), Gaps = 4/57 (7%)
 Frame = -1

Query: 481 QKTGDKKGAVHVATPHPAKKVGKTPATSDK----SPKSGGSVACKSCTKTFNSGVAL 323
           QKTG KKGA HVATPHPAK  GKTPA +DK    SPKSGGSV CKSC+KTFNS +AL
Sbjct: 238 QKTGGKKGATHVATPHPAK--GKTPANNDKLTEKSPKSGGSVPCKSCSKTFNSEMAL 292

>HD2A_MAIZE (O24591) Histone deacetylase 2a (HD2a) (Zm-HD2a) (Nucleolar histone|
           deacetylase HD2-p39)
          Length = 307

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 39/61 (63%), Positives = 42/61 (68%), Gaps = 8/61 (13%)
 Frame = -1

Query: 481 QKTGDKKGA-VHVATPHPAKKVGKTPATSDKS-------PKSGGSVACKSCTKTFNSGVA 326
           QKTG KKGA VHVATPHPAK  GKT   +DKS       PKSGGSV CK C+K+F S  A
Sbjct: 233 QKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSGGSVPCKPCSKSFISETA 290

Query: 325 L 323
           L
Sbjct: 291 L 291

>HD2C_ARATH (Q9LZR5) Histone deacetylase 2c (HD-tuins protein 3)|
          Length = 294

 Score = 60.5 bits (145), Expect = 2e-09
 Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 8/63 (12%)
 Frame = -1

Query: 481 QKTGDKKGAVHVATPHPAKKVGK------TPATS--DKSPKSGGSVACKSCTKTFNSGVA 326
           QKT  KK  VHVATPHP+K+ GK      T  TS   ++PKS G+  CKSCT+TF S + 
Sbjct: 222 QKTDSKKPHVHVATPHPSKQAGKNSGGGSTGETSKQQQTPKSAGAFGCKSCTRTFTSEMG 281

Query: 325 LAS 317
           L S
Sbjct: 282 LQS 284

>HD2C_MAIZE (Q9M4U4) Histone deacetylase 2c (HD2c) (Zm-HD2c)|
          Length = 300

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 37/60 (61%), Positives = 40/60 (66%), Gaps = 8/60 (13%)
 Frame = -1

Query: 481 QKTGDKKGA-VHVATPHPAKKVGKTPATSDKS-------PKSGGSVACKSCTKTFNSGVA 326
           QKTG KKGA VHVATPHPAK  GKT   +DKS       PKSG  V CKSC+K+F S  A
Sbjct: 233 QKTGGKKGAAVHVATPHPAK--GKTIVNNDKSVKSPKSAPKSG--VPCKSCSKSFISETA 288

>HD2A_SOYBN (Q8LJS2) Histone deacetylase 2a (HD2a) (Nucleolar histone|
           deacetylase HD2-p39)
          Length = 295

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
 Frame = -1

Query: 481 QKTGDKKGAVHVATPHPAKKVGKTP-ATSDKSPKSGGSVACKSCTKTFNSGVAL 323
           +KT  KK +VHVATPHP+KK GKTP +T  ++P S G ++C SC K+F +   L
Sbjct: 232 EKTDGKK-SVHVATPHPSKKGGKTPNSTKGQTPNSAGQLSCASCKKSFTNEAGL 284

>HD2B_ARATH (Q56WH4) Histone deacetylase 2b (HD-tuins protein 2)|
          Length = 306

 Score = 56.2 bits (134), Expect = 4e-08
 Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
 Frame = -1

Query: 481 QKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGG-SVACKSCTKTFNSG 332
           QKT +KK   H ATPHPAKK GK+P  +++SPKSGG S    +  K FNSG
Sbjct: 236 QKTEEKKKGGHTATPHPAKKGGKSPVNANQSPKSGGQSSGGNNNKKPFNSG 286

>HD2A_SOLCH (Q6V9I6) Histone deacetylase 2a (HD2a) (ScHD2a)|
          Length = 269

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 29/55 (52%), Positives = 33/55 (60%)
 Frame = -1

Query: 481 QKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSGVALAS 317
           QKT  KKG  HVATPHP+K+  KT       PKS GS  CK C ++F S  AL S
Sbjct: 212 QKTDGKKGGGHVATPHPSKQASKT-------PKSAGSHHCKPCNRSFGSEGALDS 259

>HD2A_ARATH (Q9FVE6) Histone deacetylase 2a (HD-tuins protein 1)|
          Length = 245

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 24/50 (48%), Positives = 29/50 (58%)
 Frame = -1

Query: 466 KKGAVHVATPHPAKKVGKTPATSDKSPKSGGSVACKSCTKTFNSGVALAS 317
           KK  V V TP    +  K    +++SPKS   V+C SC KTFNSG AL S
Sbjct: 187 KKAKVAV-TPQKTDEKKKGGKAANQSPKSASQVSCGSCKKTFNSGNALES 235

>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 19) (Meltrin beta)
          Length = 920

 Score = 32.0 bits (71), Expect = 0.87
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 400 WLLGSCLPSWPGAGSQHGQPPSCH 471
           W L +C P W   GSQ G PP  H
Sbjct: 21  WPLAACEPGWTTRGSQEGSPPLQH 44

>I23O_HUMAN (P14902) Indoleamine 2,3-dioxygenase (EC 1.13.11.42) (IDO)|
           (Indoleamine-pyrrole 2,3-dioxygenase)
          Length = 403

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 359 LAGHRPSRLGRLVAGCWGLAYLLGRVRG 442
           L  H+  RL RLV GC  +AY+ G+  G
Sbjct: 70  LTDHKSQRLARLVLGCITMAYVWGKGHG 97

>VU1_HHV6U (Q01349) U1 protein|
          Length = 366

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +2

Query: 371 RPSRLGRLVAGCWGLAYLLGRVRGRNMDSPLL 466
           RP +  RL+ G  G+A ++GR  GR + SPLL
Sbjct: 220 RPEKRWRLIPG-GGVAVVIGRFFGRGVTSPLL 250

>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene|
           AF4) (FEL protein)
          Length = 1210

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +1

Query: 367 PPTLQTWATCRWLLGSCLPSWPGAGSQHGQPPSCH 471
           PPT   W    WL     P+ P  G +  +PP  H
Sbjct: 507 PPTTNKWQLDNWLTKVSQPAAPPEGPRSTEPPRRH 541

>HD_MOUSE (P42859) Huntingtin (Huntington disease protein homolog) (HD protein)|
          Length = 3119

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -1

Query: 481  QKTGDKKGAVHVATPHPAKKVGKTPATSDKSPKSGGSVACKS 356
            +K  +K+     +TP   KKVG+  A S +S  SG   A KS
Sbjct: 1163 RKGKEKEPGEQASTPMSPKKVGEASAASRQSDTSGPVTASKS 1204


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,882,641
Number of Sequences: 219361
Number of extensions: 1260996
Number of successful extensions: 3922
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3915
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)